🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Allison J. Lopatkin

University of Rochester

ORCID: 0000-0003-0018-9205

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

PlasAnn: a curated plasmid-specific database and annotation pipeline for standardized gene and function analysis

Nucleic Acids Research(2025)10.1093/nar/gkaf1507

Top 100%

0DataRank

Top 100%0 citations

Abhishek K. Sharma, Jordan C. E. Blair, Allison J. Lopatkin, Habibul Islam

Papers

Driven by 14 papers — median percentile 0. Top paper: “Purine and pyrimidine synthesis differently affect the strength of the inoculum effect for aminoglycoside and β-lactam antibiotics”.

Purine and pyrimidine synthesis differently affect the strength of the inoculum effect for aminoglycoside and β-lactam antibiotics

Microbiology Spectrum(2024)10.1128/spectrum.01895-24

N/A

0.216DataRank · unranked

3 citations

Melissa M Marzouk, Madeline Cole, Marla C. Fortoul, S. Kethireddy, Rehan Contractor +13 more

Clinically relevant mutations in core metabolic genes confer antibiotic resistance

Science(2021)10.1126/science.aba0862

N/A

0DataRank · unranked

362 citations

Sarah C. Bening, Abigail L. Manson, Jonathan Stokes, Michael A. Kohanski, Ahmed H. Badran +5 more

Digital Insights Into Nucleotide Metabolism and Antibiotic Treatment Failure

Frontiers in Digital Health(2021)10.3389/fdgth.2021.583468

N/A

0DataRank · unranked

48 citations

Jason H. Yang, Allison J. Lopatkin

Investigation of the prevalence and catalytic activity of rubredoxin-fused alkane monooxygenases (AlkBs)

Journal of Inorganic Biochemistry(2021)10.1016/j.jinorgbio.2021.111409

N/A

0DataRank · unranked

22 citations

Allison P. Forsberg, Juliet Lee, Christina L. Vizcarra, Allison J. Lopatkin, Rachel N. Austin +1 more

PHASE: A MATLAB Based Program for the Analysis of Drosophila Phase, Activity and Sleep under Entrainment

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.14.472617

N/A

0DataRank · unranked

0 citations

Lakshman Abhilash, Allison J. Lopatkin, Ardi Roelofs, Evardra Bell, M.P. Fernandez +2 more

Horizontal gene transfer enables programmable gene stability in synthetic microbiota

Nature Chemical Biology(2022)10.1038/s41589-022-01114-3

N/A

0DataRank · unranked

49 citations

Andrea Weiss, Ammara Aqeel, Feilun Wu, Allison J. Lopatkin, Lawrence A. David +2 more

PHASE: An Open-Source Program for the Analysis of Drosophila Ph ase, A ctivity, and S leep Under E ntrainment

Journal of Biological Rhythms(2022)10.1177/07487304221093114

N/A

0DataRank · unranked

28 citations

Lakshman Abhilash, Allison J. Lopatkin, Adrienne Kehde Roelofs, Evardra Bell, Maria P. Fernandez +2 more

Population structure ofblaKPC-harbouring IncN plasmids at a New York City medical centre and evidence for multi-species horizontal transmission

Journal of Antimicrobial Chemotherapy(2022)10.1093/jac/dkac114

N/A

0DataRank · unranked

14 citations

Medini K. Annavajhala, Nina L. Tang, Felix D. Rozenberg, Mehrose Ahmad, Heekuk Park +3 more

Interactions between metabolism and growth can determine the co-existence of Staphylococcus aureus and Pseudomonas aeruginosa

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.14.507888

N/A

0DataRank · unranked

0 citations

Marla C. Fortoul, Gabriela Diaz-Tang, Estefania Marin Meneses, Taniya Mariah, Brandon Toscan +5 more

Sub-inhibitory antibiotic treatment selects for enhanced metabolic efficiency

Microbiology Spectrum(2024)10.1128/spectrum.03241-23

N/A

0DataRank · unranked

12 citations

Karolina Szenkiel, Anika Rahman, Mehrose Ahmad, Maya Fabozzi, Robert P. Smith +2 more

Purine and pyrimidine synthesis differently affect the strength of the inoculum effect for aminoglycoside and β-lactam antibiotics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.09.588696

N/A

0DataRank · unranked

1 citations

Melissa M Marzouk, Madeline Cole, Marla C. Fortoul, S. Kethireddy, Rehan Contractor +13 more

A biphasic metabolic–growth trade-off governs β-lactam inoculum effects

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.14.682300

N/A

0DataRank · unranked

0 citations

Kiran Singh, Philopatier Ibrahim, Trent Moulder, Tiffany Rakela, Yabesera Negussie +12 more

Environmental and genetic determinants of plasmid mobility in pathogenic Escherichia coli

Science Advances(2020)10.1126/sciadv.aax3173

N/A

0DataRank · unranked

75 citations

Adam Davidovich, Li Cheng, Allison J. Lopatkin, Wenchen Song, Joshua T. Thaden +4 more

PlasAnn: a curated plasmid-specific database and annotation pipeline for standardized gene and function analysis

Nucleic Acids Research(2025)10.1093/nar/gkaf1507

Top 100%

0DataRank

Top 100%0 citations

Abhishek K. Sharma, Jordan C. E. Blair, Allison J. Lopatkin, Habibul Islam