S. Stephen Yi

Also affiliated with Baylor College of Medicine, California Southern University, Temple College, Soochow University, Baylor Scott & White Medical Center - Temple, Neurological Research Institute, Baylor Scott & White Health, The University of Texas at Austin

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer

(2023)10.1158/0008-5472.c.6513646.v1

Top 100%

0DataRank

Top 100%0 citations

Yongsheng Li, Sairahul R. Pentaparthi, Daniel J. McGrail, Raymond Zou, Li Guo +22 more

Papers

Driven by 48 papers — median percentile 0. Top paper: “Survey of variation in human transcription factors reveals prevalent DNA binding changes”.

Survey of variation in human transcription factors reveals prevalent DNA binding changes

Science(2016)10.1126/science.aad2257

N/A

4.7DataRank · unranked

153 citations

Anastasia Vedenko, Jesse V. Kurland, Julia M. Rogers, Stephen S. Gisselbrecht, Elizabeth J. Rossin +19 more

Deciphering the impact of genomic variation on function

Nature(2024)10.1038/s41586-024-07510-0

N/A

1.1DataRank · unranked

89 citations

Jesse M. Engreitz, Heather A. Lawson, Harinder Singh, Lea M. Starita, Gary C. Hon +95 more

Integrated Genomic Characterization of the Human Immunome in Cancer

Cancer Research(2020)10.1158/0008-5472.can-20-0384

N/A

0.875DataRank · unranked

32 citations

Brandon Burgman, Daniel J. McGrail, Ming Sun, Dan Qi, Sachet A. Shukla +10 more

Defining the condensate landscape of fusion oncoproteins

Nature Communications(2023)10.1038/s41467-023-41655-2

N/A

0.657DataRank · unranked

79 citations

Hazheen K. Shirnekhi, Scott D. Gorman, Bappaditya Chandra, David W. Baggett, Cheon‐Gil Park +22 more

Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data

Nature Computational Science(2024)10.1038/s43588-024-00597-5

N/A

0.617DataRank · unranked

17 citations

Anna Capasso, S. Gail Eckhardt, Uma Giri, Alexander Somma, Todd M. Pitts +9 more

Pervasive mislocalization of pathogenic coding variants underlying human disorders

Cell(2024)10.1016/j.cell.2024.09.003

N/A

0.609DataRank · unranked

57 citations

Marzieh Haghighi, Shahan Haider, Chloe Reno, Zhen‐Yuan Lin, Dmitri Segal +24 more

Rapid iPSC inclusionopathy models shed light on formation, consequence, and molecular subtype of α-synuclein inclusions

Neuron(2024)10.1016/j.neuron.2024.06.002

N/A

0.520DataRank · unranked

31 citations

Alain Ndayisaba, Amanda J. Lewis, YuHong Fu, Giselle T. Sagredo, Anastasia Kuzkina +49 more

PRMT blockade induces defective DNA replication stress response and synergizes with PARP inhibition

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101326

N/A

0.510DataRank · unranked

29 citations

Lacey E. Dobrolecki, Christina Sallas, Xudong Zhang, Travis Kerr, Deepa Bisht +19 more

Biomolecular Condensation: A New Phase in Cancer Research

Cancer Discovery(2022)10.1158/2159-8290.cd-21-1605

N/A

0.464DataRank · unranked

21 citations

Daniel J. McGrail, Thomas M. Lozanoski, Brandon S. Dunn, David Shih, Kara M. Cirillo +7 more

Widespread BRCA1/2-independent homologous recombination defects are caused by alterations in RNA-binding proteins

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101255

N/A

0.442DataRank · unranked

18 citations

Yang Li, Roger S. Smith, Bin Feng, Hui Dai, Limei Hu +9 more

e-MutPath: computational modeling reveals the functional landscape of genetic mutations rewiring interactome networks

Nucleic Acids Research(2020)10.1093/nar/gkaa1015

N/A

0.442DataRank · unranked

18 citations

Brandon Burgman, Ishaani S Khatri, Sairahul R. Pentaparthi, Zhe Su, Daniel J. McGrail +6 more

mi-IsoNet: systems-scale microRNA landscape reveals rampant isoform-mediated gain of target interaction diversity and signaling specificity

Briefings in Bioinformatics(2021)10.1093/bib/bbab091

N/A

0.385DataRank · unranked

12 citations

Yongsheng Li, Kara M. Cirillo, Robert A. Marick, Zhe Su, Xing Yin +5 more

Genomic rare variant mechanisms for congenital cardiac laterality defect: A digenic model approach

The American Journal of Human Genetics(2025)10.1016/j.ajhg.2025.05.014

N/A

0.330DataRank · unranked

8 citations

Jonathan Klonowski, Bo Yuan, Karen J. Coveler, Zain Dardas, Iman Egab +15 more

Single-cell CRISPR immune screens reveal immunological roles of tumor intrinsic factors

NAR Cancer(2022)10.1093/narcan/zcac038

N/A

0.269DataRank · unranked

5 citations

Shaoheng Liang, Chunyu Xu, Yanjun Wei, Yunfei Wang, Yukun Tan +12 more

AD-Syn-Net: systematic identification of Alzheimer’s disease-associated mutation and co-mutation vulnerabilities via deep learning

Briefings in Bioinformatics(2023)10.1093/bib/bbad030

N/A

0.241DataRank · unranked

4 citations

Zeynep H. Coban Akdemir, Ruixuan Gao, Xiaoqian Jiang, Gloria Sheynkman, Erxi Wu +4 more

Gain-of-Function Variomics and Multi-omics Network Biology for Precision Medicine

Methods in molecular biology(2023)10.1007/978-1-0716-3163-8_24

N/A

0.208DataRank · unranked

3 citations

Sharad Awasthi, Sumanta Ghosh, Deepa Bisht, Zeynep H. Coban Akdemir, Gloria Sheynkman +3 more

Uncovering cell-type-specific immunomodulatory variants and molecular phenotypes in COVID-19 using structurally resolved protein networks

Cell Reports(2024)10.1016/j.celrep.2024.114930

N/A

0.165DataRank · unranked

2 citations

P. Roy, Munesh Kumar Harioudh, Daniel J. McGrail, Donghui Yang, Harinder Singh +7 more

Pervasive mislocalization of pathogenic coding variants underlying human disorders

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.05.556368

N/A

0DataRank · unranked

9 citations

Marzieh Haghighi, Shahan Haider, Zhen‐Yuan Lin, Dmitri Segal, Chloe Reno +18 more

Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcriptomics data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.20.524974

N/A

0DataRank · unranked

2 citations

Anna Capasso, S. Gail Eckhardt, Uma Giri, Alexander Somma, Todd M. Pitts +9 more

Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer

(2023)10.1158/0008-5472.c.6513646.v1

Top 100%

0DataRank

Top 100%0 citations

Yongsheng Li, Sairahul R. Pentaparthi, Daniel J. McGrail, Raymond Zou, Li Guo +22 more

Data from Landscape of MicroRNA Regulatory Network Architecture and Functional Rerouting in Cancer

(2023)10.1158/0008-5472.c.6513646

Top 100%

0DataRank

Top 100%0 citations

Yongsheng Li, Sairahul R. Pentaparthi, Daniel J. McGrail, Raymond Zou, Li Guo +22 more

Data from Integrated Genomic Characterization of the Human Immunome in Cancer

(2023)10.1158/0008-5472.c.6512134.v1

N/A

0DataRank · unranked

0 citations

Brandon Burgman, Daniel J. McGrail, Ming Sun, Dan Qi, Sachet A. Shukla +10 more

The interferon/STAT1 signaling axis is a common feature of tumor-initiating cells in breast cancer

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.15.557958

N/A

0DataRank · unranked

0 citations

Ping Gong, John D. Landua, R. Rajaram Srinivasan, Abhinaya Ganesan, Lacey E. Dobrolecki +8 more

Integrated multi-omics analyses identify anti-viral host factors and pathways controlling SARS-CoV-2 infection

Nature Communications(2024)10.1038/s41467-023-44175-1

N/A

0DataRank · unranked

39 citations

Yanjun Wei, Jing Zou, Roshni Jaffery, Long Sun, Shaoheng Liang +16 more

Exploration of the intracellular chiral metabolome in pediatric BCP-ALL: a pilot study investigating the metabolic phenotype of IgH locus aberrations

Frontiers in Oncology(2024)10.3389/fonc.2024.1413264

N/A

0DataRank · unranked

2 citations

Ruggiero Gorgoglione, Valeria Impedovo, Xingxin Pan, Chakkarai Sathyaseelan, S. Stephen Yi +3 more

Reviewer #1 (Public Review): Lymphoid origin of intrinsically activated plasmacytoid dendritic cells in mice

(2024)10.7554/elife.96394.1.sa1

N/A

0DataRank · unranked

0 citations

Joseph D. Dekker, Kendra Garrison, Zhe Su, Catherine Rhee, Zicheng Hu +10 more

Disparate leukemia mutations converge on nuclear phase-separated condensates

Cell(2025)10.1016/j.cell.2025.10.010

N/A

0DataRank · unranked

14 citations

Elmira Khabusheva, Archish Anand, Joshua Beale, Marwa Sadek, Chun‐Wei Chen +20 more

Encoding and decoding selectivity and promiscuity in the human chemokine-GPCR interaction network

Cell(2025)10.1016/j.cell.2025.03.046

N/A

0DataRank · unranked

9 citations

Martyna Szpakowska, Lindsay J. Talbot, Greg Slodkowicz, Duccio Malinverni, Monica A. Thomas +12 more

Therapeutic potential of PRMT1 as a critical survival dependency target in multiple myeloma

BMC Cancer(2025)10.1186/s12885-025-15104-w

N/A

0DataRank · unranked

1 citations

Sharad Awasthi, Farid Shahid, S. Stephen Yi, Nidhi Sahni, C. Marcelo Aldaz +1 more

Validation of a Mass Spectrometry–Based Proteomics Molecular Pathology Assay

Molecular & Cellular Proteomics(2025)10.1016/j.mcpro.2025.101487

N/A

0DataRank · unranked

1 citations

Jeeyeon Baik, Oana Madalina Mereuta, S. Stephen Yi, Ayal Cooper Walland, Kristel Flor +5 more

Lineage Tracing and Single-Cell RNA Sequencing Reveal a Common Transcriptional State in Breast Cancer Tumor–Initiating Cells Characterized by IFN/STAT1 Activity

Cancer Research(2025)10.1158/0008-5472.can-23-4022

N/A

0DataRank · unranked

2 citations

Ping Gong, John D. Landua, Ramakrishnan Rajaram Srinivasan, Abhinaya Ganesan, Lacey E. Dobrolecki +8 more

Therapeutic Potential of PRMT1 as a Critical Survival Dependency Target in Multiple Myeloma

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.29.635603

N/A

0DataRank · unranked

0 citations

Sharad Awasthi, Farid Shahid, S. Stephen Yi, Nidhi Sahni, C. Marcelo Aldaz +1 more

Comprehensive and Integrated Genomic Characterization of Human Immunome in Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.02.128884

N/A

0DataRank · unranked

0 citations

Todd Triplett, Brandon Burgman, Ming Sun, Daniel J. McGrail, Dan Qi +10 more

e-MutPath: Computational modelling reveals the functional landscape of genetic mutations rewiring interactome networks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.22.262386

N/A

0DataRank · unranked

0 citations

Daniel J. McGrail, Brandon Burgman, S. Stephen Yi, Nidhi Sahni, Yongsheng Li

i-Modern: Integrated multi-omics network model identifies potential therapeutic targets in glioma by deep learning with interpretability

Computational and Structural Biotechnology Journal(2022)10.1016/j.csbj.2022.06.058

N/A

0DataRank · unranked

34 citations

Brandon Burgman, Erxi Wu, Jason H. Huang, Nidhi Sahni, S. Stephen Yi +1 more

Single-cell transcriptomic mapping of intestinal epithelium that undergoes 3D morphogenesis and mechanodynamic stimulation in a gut-on-a-chip

iScience(2022)10.1016/j.isci.2022.105521

N/A

0DataRank · unranked

17 citations

Zhe Su, S. Stephen Yi, Hyun Jung Kim, Woojung Shin

Metabolomics-based phenotypic screens for evaluation of drug synergy via direct-infusion mass spectrometry

iScience(2022)10.1016/j.isci.2022.104221

N/A

0DataRank · unranked

14 citations

G. Lavender Hackman, Achinto Saha, Atul Rathore, Meghan Collins, Chelsea Friedman +6 more

Circulating metabolites associated with tumor hypoxia and early response to treatment in bevacizumab-refractory glioblastoma after combined bevacizumab and evofosfamide

Frontiers in Oncology(2022)10.3389/fonc.2022.900082

N/A

0DataRank · unranked

10 citations

Renu Pandey, Jennifer Chiou, Ayon Bhattacharya, Shi‐Liang Huang, Xingxin Pan +5 more

Rapid iPSC inclusionopathy models shed light on formation, consequence and molecular subtype of α-synuclein inclusions

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.08.515615

N/A

0DataRank · unranked

9 citations

Alain Ndayisaba, Amanda J. Lewis, YuHong Fu, Giselle T. Sagredo, Ludovica Zaccagnini +44 more

Drug combination prioritization for cancer treatment using single-cell RNA-seq based transfer learning

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.06.487357

N/A

0DataRank · unranked

7 citations

Daniel J. McGrail, Nidhi Sahni, S. Stephen Yi, Daniel Osorio

Beyond BRCA: Discovery of novel causes and consequences of homologous recombination deficiencies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.01.510467

N/A

0DataRank · unranked

0 citations

Yang Li, Roger S. Smith, Bin Feng, Hui Dai, Yongsheng Li +9 more

Spatial imaging of glycoRNA in single cells with ARPLA

Nature Biotechnology(2023)10.1038/s41587-023-01801-z

N/A

0DataRank · unranked

155 citations

Weijie Guo, Quanbing Mou, Xiangli Shao, Mingkuan Lyu, Valeria Garcia +8 more

Alternative splicing of GSDMB modulates killer lymphocyte–triggered pyroptosis

Science Immunology(2023)10.1126/sciimmunol.adg3196

N/A

0DataRank · unranked

89 citations

Shiyu Xia, Xingxin Pan, Kaixiong Ye, Zhouyihan Li, Jiexi Li +9 more

AI-DrugNet: A network-based deep learning model for drug repurposing and combination therapy in neurological disorders

Computational and Structural Biotechnology Journal(2023)10.1016/j.csbj.2023.02.004

N/A

0DataRank · unranked

38 citations

Jun Yun, Zeynep H. Coban Akdemir, Xiaoqian Jiang, Erxi Wu, Jason H. Huang +3 more

Distinct astrocytic modulatory roles in sensory transmission during sleep, wakefulness, and arousal states in freely moving mice

Nature Communications(2023)10.1038/s41467-023-37974-z

N/A

0DataRank · unranked

37 citations

Wei Wang, Simeng Gu, Dan Qi, Maiken Nedergaard, Weiguo Peng +11 more

Transcriptomic analyses of patient peripheral blood with hemoglobin depletion reveal glioblastoma biomarkers

npj Genomic Medicine(2023)10.1038/s41525-022-00348-3

N/A

0DataRank · unranked

24 citations

Yiqun Geng, Jacob Cardenas, Jinghua Gu, S. Stephen Yi, Jason H. Huang +3 more

Loss of p53 enhances the tumor-initiating potential and drug resistance of clonogenic multiple myeloma cells

Blood Advances(2023)10.1182/bloodadvances.2022009387

N/A

0DataRank · unranked

10 citations

Ian Chiu, Qiuju Wang, Jorge A. Bustamante, Wenxuan Jiang, Kiera Rycaj +5 more

The HAPSTR2 retrogene buffers stress signaling and resilience in mammals

Nature Communications(2023)10.1038/s41467-022-35697-1

N/A

0DataRank · unranked

9 citations

Harun Cingoz, Milad J. Alasady, Sammy Alhayek, Claire M. Phoumyvong, Nidhi Sahni +3 more

S. Stephen Yi

Indexed papers

Top data-sharing exemplar

Papers