Paul A. Khavari

Also affiliated with Stanford University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 29 papers. Top paper: “Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma”.

Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma

Cell(2020)10.1016/j.cell.2020.05.039

N/A

10.2DataRank · unranked

1137 citations

Adam J. Rubin, Kim Thrane, Sizun Jiang, David L. Reynolds, Robin M. Meyers +16 more

Structural modularity of the XIST ribonucleoprotein complex

Nature Communications(2020)10.1038/s41467-020-20040-3

N/A

0.689DataRank · unranked

98 citations

Jimmy K. Guo, Yuning Wei, Diana R. Dou, Brian Zarnegar, Qing Ma +7 more

Glucose dissociates DDX21 dimers to regulate mRNA splicing and tissue differentiation

Cell(2023)10.1016/j.cell.2022.12.004

N/A

0.644DataRank · unranked

72 citations

Douglas F. Porter, Vanessa Lopez-Pajares, Zurab Siprashvili, Robin M. Meyers, Yunhao Bai +19 more

A cis-regulatory lexicon of DNA motif combinations mediating cell-type-specific gene regulation

Cell Genomics(2022)10.1016/j.xgen.2022.100191

N/A

0.500DataRank · unranked

27 citations

Margaret Guo, Yang Zhao, Namyoung Jung, Rose T. Bussat, Daniel Sunwook Kim +7 more

Integrative analyses highlight functional regulatory variants associated with neuropsychiatric diseases

Nature Genetics(2023)10.1038/s41588-023-01533-5

N/A

0.470DataRank · unranked

22 citations

David L. Reynolds, Cheen Euong Ang, Yingfei Liu, Yang Zhao, Laura K. Donohue +23 more

The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.16.342857

N/A

0.434DataRank · unranked

17 citations

Viviana I. Risca, David L. Reynolds, James Chappell, Adam J. Rubin, Namyoung Jung +11 more

Glucose modulates IRF6 transcription factor dimerization to enable epidermal differentiation

Cell stem cell(2025)10.1016/j.stem.2025.02.017

N/A

0.396DataRank · unranked

13 citations

Aparna Bhaduri, Yang Zhao, Gayatri Gowrishankar, Laura K. Donohue, Margaret Guo +20 more

Glucose binds and activates NSUN2 to promote translation and epidermal differentiation

Nucleic Acids Research(2024)10.1093/nar/gkae1097

N/A

0.396DataRank · unranked

13 citations

Douglas F. Porter, Ya Li, Lindsey M. Meservey, Yen‐Yu Yang, Cheng-Jie Ma +10 more

Functional analysis of cancer-associated germline risk variants

Nature Genetics(2025)10.1038/s41588-024-02070-5

N/A

0.385DataRank · unranked

12 citations

Poornima H. Neela, Suhas Srinivasan, Zurab Siprashvili, Ronald L. Shanderson, Audrey W. Hong +22 more

Glucose modulates transcription factor dimerization to enable tissue differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.28.518222

N/A

0.307DataRank · unranked

5 citations

Aparna Bhaduri, Yang Zhao, Gayatri Gowrishankar, Laura K. Donohue, Margaret Guo +16 more

Analyzing RNA‐Protein Interactions by Cross‐Link Rates and CLIP‐seq Libraries

Current Protocols(2023)10.1002/cpz1.659

N/A

0.241DataRank · unranked

4 citations

Raghav M. Garg, Robin M. Meyers, Weili Miao, Luca Ducoli, Brian Zarnegar +2 more

DDX50 cooperates with STAU1 to effect stabilization of pro-differentiation RNAs

Cell Reports(2025)10.1016/j.celrep.2024.115174

N/A

0.241DataRank · unranked

4 citations

Douglas F. Porter, Zurab Siprashvili, Ian Ferguson, Luca Ducoli, Duy T. Nguyen +12 more

Repurposing an epithelial sodium channel inhibitor as a therapy for murine and human skin inflammation

Science Translational Medicine(2024)10.1126/scitranslmed.ade5915

N/A

0.241DataRank · unranked

4 citations

Mazen Nasrallah, Leandra V. Jackrazi, Konnie Q. Guo, Jessica M. Fuhriman, Rebecca Szafran +11 more

Thermal proteome profiling identifies glucose binding proteins involved in metabolic disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.06.651509

N/A

0.104DataRank · unranked

1 citations

Ian D. Ferguson, Vivian B. Tien, Luca Ducoli, Weili Miao, Vanessa Lopez-Pajares +6 more

PROBER identifies proteins associated with programmable sequence-specific DNA in living cells

Nature Methods(2022)10.1038/s41592-022-01552-w

N/A

0DataRank · unranked

14 citations

Muthukumar Ramanathan, Weili Miao, Robin M. Meyers, Deepti Rao, Vanessa Lopez-Pajares +13 more

Modified forms of easyCLIP

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.15.472862

N/A

0DataRank · unranked

2 citations

Raghav M. Garg, Robin M. Meyers, Weili Miao, Luca Ducoli, Brian Zarnegar +2 more

Functional characterization of human genomic variation linked to polygenic diseases

Trends in Genetics(2023)10.1016/j.tig.2023.02.014

N/A

0DataRank · unranked

30 citations

Paul A. Khavari, Tania Fabo

The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.23.432450

N/A

0DataRank · unranked

10 citations

Muthukumar Ramanathan, Ronald L. Shanderson, Laura K. Donohue, Ian Ferguson, Margaret Guo +9 more

SARS-CoV-2 B.1.1.7 and B.1.351 Spike variants bind human ACE2 with increased affinity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.22.432359

N/A

0DataRank · unranked

57 citations

Ian Ferguson, Weili Miao, Paul A. Khavari, Muthukumar Ramanathan

Data from Tumor Necrosis Factor Receptor 1/c-Jun-NH2-Kinase Signaling Promotes Human Neoplasia

(2023)10.1158/0008-5472.c.6496542.v1

N/A

0DataRank · unranked

0 citations

Amy E. Adams, Todd W. Ridky, Shiying Tao, Paul A. Khavari, Jennifer Zhang

Data from Tumor Necrosis Factor Receptor 1/c-Jun-NH2-Kinase Signaling Promotes Human Neoplasia

(2023)10.1158/0008-5472.c.6496542

N/A

0DataRank · unranked

0 citations

Amy E. Adams, Todd W. Ridky, Shiying Tao, Paul A. Khavari, Jennifer Zhang

Mutant collagen COL11A1 enhances cancerous invasion

Oncogene(2021)10.1038/s41388-021-02013-y

N/A

0DataRank · unranked

40 citations

Zurab Siprashvili, Angela Mah, Tomas Bencomo, Lara E. Elcavage, Yonglu Che +4 more

Mitochondrial Raf1 Regulates Glutamine Catabolism

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.08.581297

N/A

0DataRank · unranked

0 citations

Ian Ferguson, Zurab Siprashvili, Luca Ducoli, Albert M. Li, Weili Miao +6 more

The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation

PLoS Pathogens(2021)10.1371/journal.ppat.1009412

N/A

0DataRank · unranked

42 citations

Muthukumar Ramanathan, Ronald L. Shanderson, Aimee Beck, Laura K. Donohue, Ian Ferguson +11 more

easyCLIP analysis of RNA-protein interactions incorporating absolute quantification

Nature Communications(2021)10.1038/s41467-021-21623-4

N/A

0DataRank · unranked

55 citations

Weili Miao, Yang Xue, Grant A. Goda, Andrew L. Ji, Laura K. Donohue +4 more

Iron-sensitive RNA regulation by poly C-binding proteins

Nucleic Acids Research(2025)10.1093/nar/gkaf942

N/A

0DataRank · unranked

3 citations

Kwame Forbes, Michael E. Sullivan, Grace A Eramo, Conner Breen, Douglas F. Porter +4 more

Genome-wide meta-analysis identifies eight new susceptibility loci for cutaneous squamous cell carcinoma

Nature Communications(2020)10.1038/s41467-020-14594-5

N/A

0DataRank · unranked

46 citations

Yuan Lin, Roxana Daneshjou, Andrey Ziyatdinov, Guðmar Þorleifsson, Adam J. Rubin +17 more

In Vivo CRISPR Interference Screen Reveals Long Noncoding RNA Portfolio Crucial for Cutaneous Squamous Cell Carcinoma Tumor Growth

Journal of Investigative Dermatology(2025)10.1016/j.jid.2025.04.038

N/A

0DataRank · unranked

1 citations

Zurab Siprashvili, Xue Yang, Jordan M. Meyers, Andrew L. Ji, Paul A. Khavari +2 more

Interactions Between Dietary Metabolites and Regulatory Risk Variants for Human Colon Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.05.674475

N/A

0DataRank · unranked

0 citations

Robin M. Meyers, Evin M. Padhi, Laura N. Kellman, Yang Zhao, Soumya Kundu +8 more