James J. Davis

Also affiliated with University of Chicago

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

7.9Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Nucleic Acids Research(2022)10.1093/nar/gkac1003

Top 4%

5.7DataRank

Top 4%1253 citations

Rida Assaf, Thomas Brettin, Neal Conrad, Clark Cucinell, James J. Davis +35 more

Papers

Driven by 23 papers — median percentile 70. Top paper: “Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR”.

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Nucleic Acids Research(2022)10.1093/nar/gkac1003

Top 4%

5.7DataRank

Top 4%1253 citations

Rida Assaf, Thomas Brettin, Neal Conrad, Clark Cucinell, James J. Davis +35 more

Analysis of the ARTIC version 3 and version 4 SARS-CoV-2 primers and their impact on the detection of the G142D amino acid substitution in the spike protein

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.27.461949

Top 14%

1.5DataRank

Top 14%19 citations

S. Wesley Long, Paul A. Christensen, Randall J. Olsen, Robert Olson, Maulik Shukla +4 more

Signals of Significantly Increased Vaccine Breakthrough, Decreased Hospitalization Rates, and Less Severe Disease in Patients with Coronavirus Disease 2019 Caused by the Omicron Variant of Severe Acute Respiratory Syndrome Coronavirus 2 in Houston, Texas

American Journal Of Pathology(2022)10.1016/j.ajpath.2022.01.007

N/A

0.810DataRank · unranked

221 citations

Randall J. Olsen, Sheng Long, Richard Snehal, James J. Davis, Matthew Ojeda Saavedra +15 more

PlasmidHostFinder: Prediction of Plasmid Hosts Using Random Forest

mSystems(2022)10.1128/msystems.01180-21

N/A

0.494DataRank · unranked

26 citations

Philip T. L. C. Clausen, Judit Szarvas, Patrick Munk, Saria Otani, Marcus Nguyen +4 more

BV-BRC: a unified bacterial and viral bioinformatics resource with expanded functionality and AI integration

Nucleic Acids Research(2025)10.1093/nar/gkaf1254

Top 46%

0.396DataRank

Top 46%13 citations

Alice R. Wattam, Antonio Aleman, Roshni Bhattacharya, Nicole Bowers, Thomas Brettin +38 more

Using Genome Sequence Data to Predict SARS-CoV-2 Detection Cycle Threshold Values

medRxiv(2022)10.1101/2022.11.14.22282297

Top 57%

0.280DataRank

Top 57%4 citations

Marcus Nguyen, Paul Christensen, S. Wesley Long, Randall J. Olsen, James M. Musser +2 more

Multiple spillovers and onward transmission of SARS-CoV-2 in free-living and captive white-tailed deer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.31.466677

N/A

0DataRank · unranked

24 citations

Meera Surendran-Nair, Rachel M. Ruden, Michelle Yon, Ruth H. Nissly, Rahul K. Nelli +13 more

Analysis of the ARTIC Version 3 and Version 4 SARS-CoV-2 Primers and Their Impact on the Detection of the G142D Amino Acid Substitution in the Spike Protein

Microbiology Spectrum(2021)10.1128/spectrum.01803-21

N/A

0DataRank · unranked

66 citations

S. Wesley Long, Paul A. Christensen, Randall J. Olsen, Robert Olson, Maulik Shukla +4 more

Rapid, widespread, and preferential increase of SARS-CoV-2 B.1.1.7 variant in Houston, TX, revealed by 8,857 genome sequences

medRxiv(2021)10.1101/2021.03.16.21253753

N/A

0DataRank · unranked

5 citations

Randall J. Olsen, Paul A. Christensen, S. Wesley Long, Sishir Subedi, James J. Davis +2 more

Delta Variants of SARS-CoV-2 Cause Significantly Increased Vaccine Breakthrough COVID-19 Cases in Houston, Texas

American Journal Of Pathology(2021)10.1016/j.ajpath.2021.10.019

N/A

0DataRank · unranked

119 citations

Randall J. Olsen, Sheng Long, Sishir Subedi, James J. Davis, Parsa Hodjat +20 more

Multiple spillovers from humans and onward transmission of SARS-CoV-2 in white-tailed deer

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2121644119

N/A

0DataRank · unranked

260 citations

Meera Surendran Nair, Rachel M. Ruden, Michele Yon, Ruth H. Nissly, Kurt J. Vandegrift +13 more

A Genome-Based Model to Predict the Virulence of Pseudomonas aeruginosa Isolates

mBio(2020)10.1128/mbio.01527-20

N/A

0DataRank · unranked

25 citations

Egon A. Ozer, Jonathan P. Allen, Marcus Nguyen, James J. Davis, Deborah R. Winter +6 more

SARS-CoV-2 Omicron (B.1.1.529) Infection of Wild White-Tailed Deer in New York City

Viruses(2022)10.3390/v14122770

N/A

0DataRank · unranked

36 citations

Michele Yon, Meera Surendran Nair, Abhinay Gontu, Santhamani Ramasamy, Saranya Amirthalingam +29 more

Transmission history of SARS-CoV-2 in humans and white-tailed deer

Scientific Reports(2022)10.1038/s41598-022-16071-z

N/A

0DataRank · unranked

30 citations

Xavier Didelot, Meera Surendran-Nair, Suresh V. Kuchipudi, Rachel M. Ruden, Michele Yon +13 more

Carbapenems drive the collateral resistance to ceftaroline in cystic fibrosis patients with MRSA

Communications Biology(2020)10.1038/s42003-020-01313-5

N/A

0DataRank · unranked

17 citations

Mélanie Roch, Agustina Taglialegna, S. Wesley Long, Matthew Ojeda Saavedra, Warren E. Rose +6 more

Early detection of emerging SARS-CoV-2 variants of interest for experimental evaluation

Frontiers in Bioinformatics(2022)10.3389/fbinf.2022.1020189

N/A

0DataRank · unranked

8 citations

James J. Davis, Anna Maria Niewiadomska, Robert Olson, Maulik Shukla, Rick Stevens +4 more

Detection of SARS-CoV-2 Omicron variant (B.1.1.529) infection of white-tailed deer

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.04.479189

N/A

0DataRank · unranked

34 citations

Michele Yon, Meera Surendran Nair, Abhinay Gontu, Saranya Amirthalingam, Ruth H. Nissly +17 more

Signals of significantly increased vaccine breakthrough, decreased hospitalization rates, and less severe disease in patients with COVID-19 caused by the Omicron variant of SARS-CoV-2 in Houston, Texas

medRxiv(2022)10.1101/2021.12.30.21268560

N/A

0DataRank · unranked

16 citations

Randall J. Olsen, S. Wesley Long, Richard Snehal, James J. Davis, Matthew Ojeda Saavedra +15 more

Within-host genetic diversity of SARS-CoV-2 in the context of large-scale hospital-associated genomic surveillance

medRxiv(2022)10.1101/2022.08.17.22278898

N/A

0DataRank · unranked

5 citations

S. Wesley Long, Randall J. Olsen, Paul James Christensen, Sishir Subedi, Matthew Chung +4 more

Early Detection of Emerging SARS-CoV-2 Variants of Interest for Experimental Evaluation

medRxiv(2022)10.1101/2022.08.08.22278553

N/A

0DataRank · unranked

4 citations

James J. Davis, Anna Maria Niewiadomska, Robert Olson, Maulik Shukla, Rick Stevens +4 more

Predicting variable gene content in Escherichia coli using conserved genes

mSystems(2023)10.1128/msystems.00058-23

N/A

0DataRank · unranked

1 citations

Zachary C. Elmore, Clay Ihle, Francesco S. Moen, Adam Slater, Benjamin N. Turner +4 more

Sequence Analysis of 20,453 Severe Acute Respiratory Syndrome Coronavirus 2 Genomes from the Houston Metropolitan Area Identifies the Emergence and Widespread Distribution of Multiple Isolates of All Major Variants of Concern

American Journal Of Pathology(2021)10.1016/j.ajpath.2021.03.004

N/A

0DataRank · unranked

52 citations

Randall J. Olsen, Paul Christensen, Sishir Subedi, Robert Olson, James J. Davis +10 more

Molecular Architecture of Early Dissemination and Massive Second Wave of the SARS-CoV-2 Virus in a Major Metropolitan Area

mBio(2020)10.1128/mbio.02707-20

N/A

0DataRank · unranked

141 citations

Randall J. Olsen, Paul A. Christensen, David W. Bernard, James J. Davis, Maulik Shukla +20 more

James J. Davis

Indexed papers

Top data-sharing exemplar

Papers