Gary D. Bader

Canadian Institute for Advanced Research

Also affiliated with University Health Network, University of Toronto, Princess Margaret Cancer Centre

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

16.2Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The reactome pathway knowledgebase 2022

Nucleic Acids Research(2021)10.1093/nar/gkab1028

Top 2%

7.9DataRank

Top 2%2570 citations

Bijay Jassal, Ralf Stephan, M Orlic-Milacic, Karen Rothfels, Andrea Senff‐Ribeiro +30 more

Papers

Driven by 43 papers — median percentile 93. Top paper: “The reactome pathway knowledgebase 2022”.

The reactome pathway knowledgebase 2022

Nucleic Acids Research(2021)10.1093/nar/gkab1028

Top 2%

7.9DataRank

Top 2%2570 citations

Bijay Jassal, Ralf Stephan, M Orlic-Milacic, Karen Rothfels, Andrea Senff‐Ribeiro +30 more

A reference map of the human binary protein interactome

Nature(2020)10.1038/s41586-020-2188-x

Top 4%

5.4DataRank

Top 4%1333 citations

Dae‐Kyum Kim, L. Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian +83 more

Sex differences in oncogenic mutational processes

Nature Communications(2020)10.1038/s41467-020-17359-2

N/A

4.2DataRank · unranked

128 citations

Stephenie D. Prokopec, Ren Sun, Fouad Yousif, Nathaniel Schmitz, Fátima Al‐Shahrour +90 more

Pathway and network analysis of more than 2500 whole cancer genomes

Nature Communications(2020)10.1038/s41467-020-14367-0

Top 9%

2.3DataRank

Top 9%117 citations

David Haan, Marta Paczkowska, Lieven P. C. Verbeke, Miguél Vázquez, Abdullah Kahraman +95 more

SBML Level 3: an extensible format for the exchange and reuse of biological models

Molecular Systems Biology(2020)10.15252/msb.20199110

N/A

0.861DataRank · unranked

311 citations

Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya +95 more

Generation of mature compact ventricular cardiomyocytes from human pluripotent stem cells

Nature Communications(2021)10.1038/s41467-021-23329-z

N/A

0.768DataRank · unranked

166 citations

Ian Fernandes, Olya Mastikhina, Dan Wilkinson, Thinh Tran, Wahiba Dhahri +10 more

Cytoscape Web: bringing network biology to the browser

Nucleic Acids Research(2025)10.1093/nar/gkaf365

N/A

0.689DataRank · unranked

98 citations

Dylan Fong, Chengzhan Gao, Christopher Churas, Rudolf Pillich, Joanna Lenkiewicz +12 more

The transcriptional landscape of Shh medulloblastoma

Nature Communications(2021)10.1038/s41467-021-21883-0

N/A

0.688DataRank · unranked

97 citations

Hamza Farooq, Florence M.G. Cavalli, A. Sorana Morrissy, Michelle Ly, Liam D. Hendrikse +94 more

Single Cell, Single Nucleus and Spatial RNA Sequencing of the Human Liver Identifies Hepatic Stellate Cell and Cholangiocyte Heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.27.436882

N/A

0.631DataRank · unranked

15 citations

Jawairia Atif, Jeff C. Liu, Cátia T. Perciani, Xue‐Zhong Ma, Cornelia Thoeni +15 more

OpenPIP: An Open-source Platform for Hosting, Visualizing and Analyzing Protein Interaction Data

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167603

Top 35%

0.554DataRank

Top 35%11 citations

Miles W. Mee, Aniket Ranjan, Tong Hao, Marc Vidal, Michael A. Calderwood +3 more

Meta-analysis of gene expression profiles of lean and obese PCOS to identify differentially regulated pathways and risk of comorbidities

Computational and Structural Biotechnology Journal(2020)10.1016/j.csbj.2020.06.023

N/A

0.494DataRank · unranked

26 citations

Ulka Gawde, Sameeksha Bhaye, Khushal Pokar, Gary D. Bader, Susan Idicula‐Thomas

A rat liver cell atlas reveals intrahepatic myeloid heterogeneity

iScience(2023)10.1016/j.isci.2023.108213

N/A

0.385DataRank · unranked

12 citations

Sai Chung, Olivia I. Pezzutti, Cátia T. Perciani, Xinle Wang, Xue‐Zhong Ma +10 more

SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks

Briefings in Bioinformatics(2021)10.1093/bib/bbab049

N/A

0.360DataRank · unranked

10 citations

Vasundra Touré, John S. Albanese, Dagmar Waltemath, Denis Shirshov, Anatoly Sorokin +4 more

BIONIC: Biological Network Integration using Convolutions

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.15.435515

N/A

0.241DataRank · unranked

4 citations

Sheena C. Li, Yoko Yashiroda, Mami Yoshimura, Zhijian Li, Luis Alberto Vega Isuhuaylas +8 more

SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.16.369330

N/A

0.208DataRank · unranked

3 citations

Vasundra Touré, John S. Albanese, Dagmar Waltemath, Denis Shirshov, Anatoly Sorokin +4 more

netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks

F1000Research(2020)10.12688/f1000research.26429.1

N/A

0.208DataRank · unranked

3 citations

Philipp Weber, Ruth Isserlin, Hussam Kaka, Shirley Hui, Muhammad A Shah +6 more

Precision medicine: Crossing the biomedical scales with AI

The Journal of Precision Medicine Health and Disease(2025)10.1016/j.premed.2025.100010

N/A

0.208DataRank · unranked

3 citations

Gary D. Bader, Sergio E. Baranzini, John A. Capra, Marina Sirota, Christina V. Theodoris +2 more

PRMT5 promotes full-length HTT expression by repressing multiple proximal intronic polyadenylation sites

Nucleic Acids Research(2025)10.1093/nar/gkaf347

N/A

0.208DataRank · unranked

3 citations

Mona Alqazzaz, Felipe E. Ciamponi, Jolene Caifeng Ho, Maxim I. Maron, Aiden M. Sababi +25 more

Gene-set enrichment analysis and visualization on the web using EnrichmentMap:RNASeq

Bioinformatics Advances(2024)10.1093/bioadv/vbaf178

N/A

0.165DataRank · unranked

2 citations

Christian Lopes, Mike Kucera, Véronique Voisin, Ruth Isserlin, Gary D. Bader +1 more

A microfluidic platform enables comprehensive gene expression profiling of mouse retinal stem cells

Lab on a Chip(2021)10.1039/d1lc00790d

N/A

0DataRank · unranked

9 citations

Mahmoud Labib, Mahla Poudineh, Brendan T. Innes, Justin Belair-Hickey, Surath Gomis +6 more

Functional impact of global rare copy number variation in autism spectrum disorders

UNC Libraries(2020)10.17615/611w-e983

N/A

0DataRank · unranked

0 citations

Christina Corsello, Patrick Bolton, Dalila Pinto, Sean Brennan, Brian Hon‐Yin Chung +27 more

Loss of epigenetic regulation disrupts lineage integrity, reactivates multipotency and promotes breast cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.22.465428

N/A

0DataRank · unranked

3 citations

Khalid N. Al‐Zahrani, Zhibo Ma, Ahmad Malik, Sampath K. Loganathan, Dan Trcka +17 more

Capturing scientific knowledge in computable form

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.10.382333

N/A

0DataRank · unranked

2 citations

Max Franz, Metin Can Siper, Dylan Fong, Funda Durupınar, Christian Dallago +10 more

Single-cell profiling of healthy human kidney reveals features of sex-based transcriptional programs and tissue-specific immunity

Nature Communications(2022)10.1038/s41467-022-35297-z

N/A

0DataRank · unranked

83 citations

Julia Murphy, Lin Zhang, Sergi Clotet‐Freixas, Jessica A. Mathews, James An +16 more

Hypophosphorylated pRb knock‐in mice exhibit hallmarks of aging and vitamin C‐preventable diabetes

The EMBO Journal(2022)10.15252/embj.2020106825

N/A

0DataRank · unranked

21 citations

Huiqin Li, Stephanie A. Schroer, Véronique Voisin, YoungJun Ju, Marek Pacal +15 more

The mitochondrial peptidase, neurolysin, regulates respiratory chain supercomplex formation and is necessary for AML viability

Science Translational Medicine(2020)10.1126/scitranslmed.aaz8264

N/A

0DataRank · unranked

46 citations

Aaron Botham, Véronique Voisin, ChangJiang Xu, Jonathan St‐Germain, David Sharon +17 more

A sequence-to-sequence approach for document-level relation extraction

(2022)10.18653/v1/2022.bionlp-1.2

N/A

0DataRank · unranked

55 citations

Gary D. Bader, Bo Wang, John Giorgi

Cytoscape.js 2023 update: a graph theory library for visualization and analysis

Bioinformatics(2023)10.1093/bioinformatics/btad031

N/A

0DataRank · unranked

167 citations

Christian Lopes, Dylan Fong, Mike Kucera, Manfred Cheung, Metin Can Siper +5 more

Medulloblastoma Arises from the Persistence of a Rare and Transient Sox2+ Granule Neuron Precursor

Cell Reports(2020)10.1016/j.celrep.2020.03.075

N/A

0DataRank · unranked

57 citations

Erika Luis, Kinjal Desai, Xiaoyang Lan, Maria Vladoiu, Owen Whitley +13 more

Multi-scale systems genomics analysis predicts pathways, cell types, and drug targets involved in normative variation in peri-adolescent human cognition

Cerebral Cortex(2023)10.1093/cercor/bhad142

N/A

0DataRank · unranked

1 citations

Shirley Hui, Philipp Weber, Soumil Narayan, Owen Whitley, Peipei Li +5 more

Single-nucleus transcriptome atlas of orbitofrontal cortex in amyotrophic lateral sclerosis with a deep learning-based decoding of alternative polyadenylation mechanisms

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.22.573083

N/A

0DataRank · unranked

9 citations

Aiden M. Sababi, Raghav Sharma, Zhiyu Xu, Shangxi Xiao, Philip McGoldrick +12 more

Single-cell and spatial transcriptomics reveals the human liver immunological landscape and myeloid dysfunction in PSC

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.28.550550

N/A

0DataRank · unranked

2 citations

Diana Nakib, Cátia T. Perciani, Xue Zhong, Lewis Liu, Erin Winter +17 more

Cell networks in the mouse liver during partial hepatectomy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.16.549116

N/A

0DataRank · unranked

0 citations

Daniel Rodrigo‐Torres, Carl Pelz, Brendan T. Innes, Pamela Canaday, Sunghee Chai +4 more

Single-cell, single-nucleus, and spatial transcriptomics characterization of the immunological landscape in the healthy and PSC human liver

Journal of Hepatology(2024)10.1016/j.jhep.2023.12.023

N/A

0DataRank · unranked

165 citations

Diana Nakib, Cátia T. Perciani, Xue Zhong, Lewis Liu, Erin Winter +18 more

A network analysis to identify mediators of germline-driven differences in breast cancer prognosis

Research Explorer (The University of Manchester)(2024)10.17615/dprd-7a14

N/A

0DataRank · unranked

0 citations

Dhanya Ramachandran, John Abraham, Mythily Sachchithananthan, Nadège Presneau, Robert Winqvist +95 more

Interpretable single-cell factor decomposition using sciRED

Research Square(2024)10.21203/rs.3.rs-4819117/v1

N/A

0DataRank · unranked

0 citations

Delaram Pouyabahar, Tallulah Andrews, Gary D. Bader

BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain

Cell Systems(2020)10.1016/j.cels.2020.03.003

N/A

0DataRank · unranked

87 citations

Peter E.A. Ash, Sadhna Phanse, Florian Goebels, Lucas ZhongMing Hu, Siwei Chen +30 more

Elevated mitochondrial membrane potential is a therapeutic vulnerability in Dnmt3a-mutant clonal hematopoiesis

Nature Communications(2025)10.1038/s41467-025-57238-2

N/A

0DataRank · unranked

28 citations

Mohsen Hosseini, Jayna J. Mistry, Claudia Morganti, Taylor Mills, Xiurong Cai +16 more

Cell networks in the mouse liver during partial hepatectomy

Stem Cell Reports(2025)10.1016/j.stemcr.2025.102683

N/A

0DataRank · unranked

2 citations

Daniel Rodrigo‐Torres, Carl Pelz, Brendan T. Innes, Pamela Canaday, Sunghee Chai +4 more

Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008205

N/A

0DataRank · unranked

94 citations

Gary D. Bader, Thinh Ngoc Tran

netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks

F1000Research(2021)10.12688/f1000research.26429.2

N/A

0DataRank · unranked

6 citations

Philipp Weber, Ruth Isserlin, Hussam Kaka, Shirley Hui, Muhammad A Shah +6 more

DeCLUTR: Deep Contrastive Learning for Unsupervised Textual Representations

(2021)10.18653/v1/2021.acl-long.72

N/A

0DataRank · unranked

363 citations

Osvald Nitski, Bo Wang, Gary D. Bader, John Giorgi

A flexible search system for high-accuracy identification of biological entities and molecules

The Journal of Open Source Software(2021)10.21105/joss.03756

N/A

0DataRank · unranked

1 citations

Jeffrey V. Wong, Metin Can Siper, Christian Dallago, John Giorgi, Emek Demir +3 more

Gary D. Bader

Indexed papers

Top data-sharing exemplar

Papers