Robert F. Murphy

Also affiliated with Stanford University

Biochemistry, Genetics and Molecular BiologyEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 18 papers. Top paper: “PD-1 suppresses the maintenance of cell couples between cytotoxic T cells and target tumor cells within the tumor”.

PD-1 suppresses the maintenance of cell couples between cytotoxic T cells and target tumor cells within the tumor

Science Signaling(2020)10.1126/scisignal.aau4518

N/A

0.500DataRank · unranked

27 citations

Grace L. Edmunds, Sin Lih Tan, Silvia Cirillo, Jane I. Pernes, Xiongtao Ruan +11 more

SBML level 3 package: spatial processes, version 1, release 1

Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics(2023)10.1515/jib-2022-0054

N/A

0.330DataRank · unranked

8 citations

Anuradha Lakshminarayana, Robert F. Murphy, Frank T. Bergmann, Akira Funahashi, Devin P. Sullivan +2 more

3DCellComposer − A versatile pipeline utilizing 2D cell segmentation methods for 3D cell segmentation

Methods(2025)10.1016/j.ymeth.2025.07.007

N/A

0.208DataRank · unranked

3 citations

Ted Zhang, Matthew Ruffalo, Robert F. Murphy, Haoran Chen

Evaluation of cell segmentation methods without reference segmentations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.17.460800

N/A

0DataRank · unranked

0 citations

Robert F. Murphy, Haoran Chen

Evaluation of cell segmentation methods without reference segmentations

Molecular Biology of the Cell(2022)10.1091/mbc.e22-08-0364

N/A

0DataRank · unranked

44 citations

Robert F. Murphy, Haoran Chen

Improving and evaluating deep learning models of cellular organization

Bioinformatics(2022)10.1093/bioinformatics/btac688

N/A

0DataRank · unranked

16 citations

Xuecong Fu, Serena Abraham, Jin Shen, Robert F. Murphy, Huangqingbo Sun

Improving and evaluating deep learning models of cellular organization

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.24.493229

N/A

0DataRank · unranked

0 citations

Xuecong Fu, Serena Abraham, Jin Shen, Robert F. Murphy, Huangqingbo Sun

Expanding the coverage of spatial proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.29.526114

N/A

0DataRank · unranked

1 citations

Jiayi Li, Robert F. Murphy, Huangqingbo Sun

Five inhibitory receptors display distinct vesicular distributions in T cells

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.21.550019

N/A

0DataRank · unranked

0 citations

Alisa Veler, Boris Simonetti, Timsse Raj, Po‐Han Chou, Stephen Cross +10 more

Expanding the coverage of spatial proteomics: a machine learning approach

Bioinformatics(2024)10.1093/bioinformatics/btae062

N/A

0DataRank · unranked

7 citations

Jiayi Li, Robert F. Murphy, Huangqingbo Sun

3DCellComposer - A Versatile Pipeline Utilizing 2D Cell Segmentation Methods for 3D Cell Segmentation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.08.584082

N/A

0DataRank · unranked

4 citations

Robert F. Murphy, Haoran Chen

Flexible and robust cell type annotation for highly multiplexed tissue images

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.12.612510

N/A

0DataRank · unranked

0 citations

Shiqiu Yu, Anna Martinez Casals, Anna Bäckström, Yuxin Lu, Cecilia Lindskog +4 more

CytoSpatio: Learning cell type spatial relationships using multirange, multitype point process models

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.31.621408

N/A

0DataRank · unranked

0 citations

Robert F. Murphy, Haoran Chen

Flexible and robust cell-type annotation for highly multiplexed tissue images

Cell Systems(2025)10.1016/j.cels.2025.101374

N/A

0DataRank · unranked

2 citations

Shiqiu Yu, Anna Martinez Casals, Anna Bäckström, Yuxin Lu, Cecilia Lindskog +4 more

Big1 is a cell cycle regulator linking cell size to basal body number

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.24.666660

N/A

0DataRank · unranked

0 citations

Adam W. J. Soh, Lisa E. Mitchell, Huangqingbo Sun, E. Collet, Gayatri Dholakia +7 more

CytoSpatio: Learning cell type spatial relationships using multirange, multitype point process models

PLoS Computational Biology(2025)10.1371/journal.pcbi.1013409

N/A

0DataRank · unranked

0 citations

Yangyuan Zhang, Robert F. Murphy, Haoran Chen

The Roles of Space and Stochasticity in Computational Simulations of Cellular Biochemistry: Quantitative Analysis and Qualitative Insights

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.02.185595

N/A

0DataRank · unranked

1 citations

Athena Chen, James R. Faeder, Philipp Henning, Ion I Moraru, Martin Meier-Schellersheim +5 more

Evaluation of categorical matrix completion algorithms: toward improved active learning for drug discovery

Bioinformatics(2021)10.1093/bioinformatics/btab322

N/A

0DataRank · unranked

5 citations

Robert F. Murphy, Huangqingbo Sun