🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Benjamin R. Doughty

Stanford University

ORCID: 0000-0003-0447-4468
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
3.0Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An encyclopedia of enhancer-gene regulatory interactions in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.09.563812
Top 11%
1.9DataRank
Top 11%120 citations

Kristy S. Mualim, Alireza Karbalayghareh, Maya U. Sheth, Kushal K. Dey, Evelyn Jagoda +41 more

Papers

Driven by 9 papers — median percentile 85. Top paper: “Genome-wide enhancer maps link risk variants to disease genes”.

Genome-wide enhancer maps link risk variants to disease genes

Nature(2021)10.1038/s41586-021-03446-x
N/A
7.7DataRank · unranked
764 citations

Drew T. Bergman, Charles P. Fulco, Philine Guckelberger, Benjamin R. Doughty, Tejal A. Patwardhan +27 more

An encyclopedia of enhancer-gene regulatory interactions in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.09.563812
Top 11%
1.9DataRank
Top 11%120 citations

Kristy S. Mualim, Alireza Karbalayghareh, Maya U. Sheth, Kushal K. Dey, Evelyn Jagoda +41 more

HyPR-seq: Single-cell quantification of chosen RNAs via hybridization and sequencing of DNA probes

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2010738117
N/A
1.6DataRank · unranked
44 citations

Benjamin R. Doughty, Vidya Subramanian, Philine Guckelberger, Qingbo S. Wang, Linlin M. Chen +13 more

Multicenter integrated analysis of noncoding CRISPRi screens

Nature Methods(2024)10.1038/s41592-024-02216-7
Top 20%
1.0DataRank
Top 20%54 citations

Josh Tycko, Jin Woo Oh, Lexi R. Bounds, Sager J. Gosai, Lazaros Lataniotis +29 more

Single-molecule states link transcription factor binding to gene expression

Nature(2024)10.1038/s41586-024-08219-w
N/A
0.795DataRank · unranked
33 citations

Michaela M. Hinks, Julia M. Schaepe, Georgi K. Marinov, Abby R. Thurm, Carolina Rios-Martinez +7 more

The chromatin landscape of the histone-possessingBacteriovoraxbacteria

Genome Research(2024)10.1101/gr.279418.124
N/A
0.245DataRank · unranked
4 citations

Benjamin R. Doughty, Anshul Kundaje, William J. Greenleaf, Georgi K. Marinov

The landscape of the histone-organized chromatin of Bdellovibrionota bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.30.564843
N/A
0DataRank · unranked
1 citations

Benjamin R. Doughty, Anshul Kundaje, William J. Greenleaf, Georgi K. Marinov

Rewriting regulatory DNA to dissect and reprogram gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.20.572268
N/A
0DataRank · unranked
19 citations

Michael T. Montgomery, H. Spencer Jones, Katherine Guo, Benjamin R. Doughty, Johannes Linder +11 more

Single-cell chromatin state transitions during epigenetic memory formation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.03.560616
N/A
0DataRank · unranked
7 citations

Carolina Rios-Martinez, Abby R. Thurm, Michaela M. Hinks, Benjamin R. Doughty, Joydeb Sinha +6 more