Gautam Dantas

Biochemistry, Genetics and Molecular BiologyMedicineEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 61 papers. Top paper: “Genetically stable CRISPR-based kill switches for engineered microbes”.

Genetically stable CRISPR-based kill switches for engineered microbes

Nature Communications(2022)10.1038/s41467-022-28163-5

N/A

4.6DataRank · unranked

270 citations

Aura Ferreiro, Skye R. S. Fishbein, Gautam Dantas, Tae Seok Moon, Austin G. Rottinghaus

Microbiota restoration reduces antibiotic-resistant bacteria gut colonization in patients with recurrent Clostridioides difficile infection from the open-label PUNCH CD study

Genome Medicine(2021)10.1186/s13073-021-00843-9

N/A

2.8DataRank · unranked

90 citations

Drew J. Schwartz, Christopher Bulow, Xiaoqing Sun, Tiffany Hink, Kimberly A. Reske +5 more

Gut microbiome composition may be an indicator of preclinical Alzheimer’s disease

Science Translational Medicine(2023)10.1126/scitranslmed.abo2984

N/A

0.875DataRank · unranked

340 citations

JooHee Choi, Jian Ryou, Erin Newcomer, Regina Thompson, Rebecca M. Bollinger +15 more

Comparative Genomics of Mycobacterium avium Complex Reveals Signatures of Environment-Specific Adaptation and Community Acquisition

mSystems(2021)10.1128/msystems.01194-21

N/A

0.835DataRank · unranked

22 citations

JooHee Choi, Meghan A. Wallace, Michelle Azar, Carlos Mejía-Chew, Shail B. Mehta +5 more

Tetracycline-inactivating enzymes from environmental, human commensal, and pathogenic bacteria cause broad-spectrum tetracycline resistance

Communications Biology(2020)10.1038/s42003-020-0966-5

N/A

0.795DataRank · unranked

199 citations

Jana L. Markley, Hirdesh Kumar, Bin Wang, Luting Fang, Sidra Irum +8 more

Necrotizing Enterocolitis and the Microbiome: Current Status and Future Directions

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa604

N/A

0.672DataRank · unranked

87 citations

Eric C. Keen, Gautam Dantas, Barbara Warner, Phillip I. Tarr, Robert Thänert

Gut pathogen colonization precedes bloodstream infection in the neonatal intensive care unit

Science Translational Medicine(2023)10.1126/scitranslmed.adg5562

N/A

0.670DataRank · unranked

86 citations

Nitan Shalon, Kate E Wardenburg, Anna L. DeVeaux, Meghan A. Wallace, Carla Hall-Moore +9 more

Effect of amoxicillin on the gut microbiome of children with severe acute malnutrition in Madarounfa, Niger: a retrospective metagenomic analysis of a placebo-controlled trial

The Lancet Microbe(2023)10.1016/s2666-5247(23)00213-6

N/A

0.587DataRank · unranked

15 citations

Amy Langdon, Xiaoqing Sun, Céline Langendorf, Fatou Berthé, Rebecca F. Grais +4 more

Genomic Characterization of Antibiotic Resistant Escherichia coli Isolated From Domestic Chickens in Pakistan

Frontiers in Microbiology(2020)10.3389/fmicb.2019.03052

N/A

0.568DataRank · unranked

43 citations

Robert F. Potter, Aura Ferreiro, Meghan A. Wallace, Abdul Rahim, Akbar Ali Malik +7 more

Gut microbiome and antibiotic resistance effects during travelers’ diarrhea treatment and prevention

mBio(2023)10.1128/mbio.02790-23

N/A

0.407DataRank · unranked

8 citations

Drew J. Schwartz, Srinand Paruthiyil, Bin Wang, Jie Ning, Sandra D. Isidean +13 more

Structure-Based Design of Bisubstrate Tetracycline Destructase Inhibitors That Block Flavin Redox Cycling

Journal of Medicinal Chemistry(2023)10.1021/acs.jmedchem.2c01629

N/A

0.406DataRank · unranked

14 citations

Caitlin M. DeAngelo, Kevin S. Blake, Hirdesh Kumar, Kendrick K. Lam, Katherine V. Jones +4 more

Staphylococcus aureus injection drug use-associated bloodstream infections are propagated by community outbreaks of diverse lineages

Communications Medicine(2021)10.1038/s43856-021-00053-9

N/A

0.396DataRank · unranked

13 citations

Juan J. Calix, John A. Wildenthal, Meghan A. Wallace, Sanjam S. Sawhney, Eric M. Ransom +5 more

Genomic surveillance of Clostridioides difficile transmission and virulence in a healthcare setting

medRxiv(2023)10.1101/2023.09.26.23295023

N/A

0.208DataRank · unranked

3 citations

Skye R. S. Fishbein, Kailun Zhang, Tiffany Hink, Kimberly A. Reske, Candice Cass +5 more

Improving Differentiation of Crohn’s Disease and Ulcerative Colitis Proteomes through Protein-Wide Association Study Feature Selection in Machine Learning

medRxiv(2024)10.1101/2024.11.13.24316854

N/A

0.165DataRank · unranked

2 citations

Aaron J. Gorelik, Skye R. S. Fishbein, Tara Fehlmann, Parakkal Deepak, Ryan Bogdan +4 more

Multi-omics investigation of Clostridioides difficile -colonized patients reveals protective commensal carbohydrate metabolism

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.24.457492

N/A

0.104DataRank · unranked

1 citations

John I. Robinson, Tiffany Hink, Kimberly A. Reske, Erin Newcomer, Carey‐Ann D. Burnham +4 more

Acute and persistent effects of commonly used antibiotics on the gut microbiome and resistome in healthy adults

Cell Reports(2022)10.1016/j.celrep.2022.110649

N/A

0DataRank · unranked

220 citations

Bin Wang, Kimberley V. Sukhum, Alaric W. D’Souza, Tiffany Hink, Candice Cass +8 more

Antibiotic-resistant organisms establish reservoirs in new hospital built environments and are related to patient blood infection isolates

Communications Medicine(2022)10.1038/s43856-022-00124-5

N/A

0DataRank · unranked

88 citations

Erin Newcomer, Candice Cass, Meghan A. Wallace, Caitlin Johnson, Jeremy D. Fine +6 more

The resistance within: Antibiotic disruption of the gut microbiome and resistome dynamics in infancy

Cell Host & Microbe(2022)10.1016/j.chom.2022.03.013

N/A

0DataRank · unranked

76 citations

Sanjam S. Sawhney, Drew J. Schwartz, Gautam Dantas, Robert Thänert

Persisting uropathogenic Escherichia coli lineages show signatures of niche-specific within-host adaptation mediated by mobile genetic elements

Cell Host & Microbe(2022)10.1016/j.chom.2022.04.008

N/A

0DataRank · unranked

49 citations

JooHee Choi, Kimberly A. Reske, Tiffany Hink, Anna Thänert, Meghan A. Wallace +19 more

Impact of international travel and diarrhea on gut microbiome and resistome dynamics

Nature Communications(2022)10.1038/s41467-022-34862-w

N/A

0DataRank · unranked

48 citations

Kevin S. Blake, Drake H. Tilley, Miguel M. Cabada, Drew J. Schwartz, Sanket Patel +8 more

E. coli catheter-associated urinary tract infections are associated with distinctive virulence and biofilm gene determinants

JCI Insight(2022)10.1172/jci.insight.161461

N/A

0DataRank · unranked

39 citations

Robert F. Potter, William H. McCoy, John A. Wildenthal, George L. Katumba, Peter J. Mucha +3 more

Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli

mSystems(2022)10.1128/msystems.00519-22

N/A

0DataRank · unranked

33 citations

Meghan A. Wallace, Kimberly A. Reske, Kelly Alvarado, Carol E. Muenks, David A. Rasmussen +5 more

Substantial overlap between symptomatic and asymptomatic genitourinary microbiota states

Microbiome(2022)10.1186/s40168-021-01204-9

N/A

0DataRank · unranked

18 citations

Robert Thänert, Meghan A. Wallace, Carey‐Ann D. Burnham, Gautam Dantas, Boahemaa Adu‐Oppong

Structural and molecular rationale for the diversification of resistance mediated by the Antibiotic_NAT family

Communications Biology(2022)10.1038/s42003-022-03219-w

N/A

0DataRank · unranked

9 citations

Emily Bordeleau, Zhiyu Xu, T. Skarina, E. Evdokimova, Sommer Chou +7 more

Outpatient Clonal Propagation and Rapid Regional Establishment of an Emergent Carbapenem-Resistant Acinetobacter baumannnii Lineage Sequence Type 499Pas

The Journal of Infectious Diseases(2022)10.1093/infdis/jiac427

N/A

0DataRank · unranked

8 citations

Maria C. Stockler de Almeida, Robert F. Potter, Meghan A. Wallace, Carey‐Ann D. Burnham, Gautam Dantas +1 more

Functional mining of novel terpene synthases from metagenomes

Biotechnology for Biofuels and Bioproducts(2022)10.1186/s13068-022-02189-9

N/A

0DataRank · unranked

4 citations

Nathan Crook, Aki Yoneda, Naomi Ahn, Jie Ning, Jiye Cheng +2 more

A low‐cost, high‐throughput microfluidic nano‐culture platform for functional metagenomics

Biotechnology Progress(2022)10.1002/btpr.3317

N/A

0DataRank · unranked

1 citations

Aura Ferreiro, Cheng‐Yu Hung, Gautam Dantas, Anand K. Ramasubramanian, Manpreet Kaur

Outpatient clonal propagation propelled rapid regional establishment of an emergent carbapenem-resistant Acinetobacter baumannii lineage ST499 Pas

medRxiv(2022)10.1101/2022.06.21.22276711

N/A

0DataRank · unranked

0 citations

Maria C. Stockler de Almeida, Robert F. Potter, Meghan A. Wallace, Carey‐Ann D. Burnham, Gautam Dantas +1 more

Antibiotic perturbations to the gut microbiome

Nature Reviews Microbiology(2023)10.1038/s41579-023-00933-y

N/A

0DataRank · unranked

385 citations

Bejan Mahmud, Gautam Dantas, Skye R. S. Fishbein

Intensive care unit sinks are persistently colonized with multidrug resistant bacteria and mobilizable, resistance-conferring plasmids

mSystems(2023)10.1128/msystems.00206-23

N/A

0DataRank · unranked

33 citations

Meghan A. Wallace, Christopher W Farnsworth, Bin Wang, Danish Gul, Jennie H. Kwon +4 more

Engineering E. coli strains using antibiotic-resistance-gene-free plasmids

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100669

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0DataRank · unranked

32 citations

Sunaina Rengarajan, Scott Vo, Erick S Ramirez Tovar, Larissa LoBello, Gautam Dantas +2 more

Diagnostic and commensal Staphylococcus pseudintermedius genomes reveal niche adaptation through parallel selection of defense mechanisms

Nature Communications(2023)10.1038/s41467-023-42694-5

N/A

0DataRank · unranked

17 citations

Rhiannon C. Vargas, Meghan A. Wallace, Carol E. Muenks, Brian V. Lubbers, Stephanie A. Fritz +3 more

A novel immune modulator IM33 mediates a glia-gut-neuronal axis that controls lifespan

Neuron(2023)10.1016/j.neuron.2023.07.010

N/A

0DataRank · unranked

15 citations

Justin Rustenhoven, Christopher A. Nelson, Taitea Dykstra, Aura Ferreiro, Zachary Papadopoulos +5 more

Structure of anhydrotetracycline-bound Tet(X6) reveals the mechanism for inhibition of type 1 tetracycline destructases

Communications Biology(2023)10.1038/s42003-023-04792-4

N/A

0DataRank · unranked

14 citations

Emily E. Williford, Kevin S. Blake, Brett Virgin-Downey, Gautam Dantas, Timothy A. Wencewicz +2 more

Comparative genomics reveals the correlations of stress response genes and bacteriophages in developing antibiotic resistance of Staphylococcus saprophyticus

mSystems(2023)10.1128/msystems.00697-23

N/A

0DataRank · unranked

10 citations

Robert F. Potter, Jamie Marino, Carol E. Muenks, Matthew G. Lammers, Jennifer Dien Bard +6 more

Uncharacterized and lineage-specific accessory genes within the Proteus mirabilis pan-genome landscape

mSystems(2023)10.1128/msystems.00159-23

N/A

0DataRank · unranked

9 citations

Kailun Zhang, Ben Reimler, Jamie Marino, Carol E. Muenks, Kelly Alvarado +8 more

Genomic Analyses of Longitudinal Mycobacterium abscessus Isolates in a Multicenter Cohort Reveal Parallel Signatures of In-Host Adaptation

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad187

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0DataRank · unranked

5 citations

Eric C. Keen, Meghan A. Wallace, Skye R. S. Fishbein, Jerome Prusa, Madsen Zimbric +7 more

Clinical sequelae of gut microbiome development and disruption in hospitalized preterm infants

Cell Host & Microbe(2024)10.1016/j.chom.2024.07.027

N/A

0DataRank · unranked

42 citations

Drew J. Schwartz, Eric C. Keen, Carla Hall-Moore, Bin Wang, Nurmohammad Shaikh +12 more

A yeast-based oral therapeutic delivers immune checkpoint inhibitors to reduce intestinal tumor burden

Cell chemical biology(2024)10.1016/j.chembiol.2024.10.013

N/A

0DataRank · unranked

35 citations

Miranda J. Wallace, Jerome Prusa, Jie Ning, Esse M. Evbuomwan, Sunaina Rengarajan +14 more

Gut microbiome correlates of recurrent urinary tract infection: a longitudinal, multi-center study

EClinicalMedicine(2024)10.1016/j.eclinm.2024.102490

N/A

0DataRank · unranked

28 citations

Robert Thänert, Kimberly A. Reske, Katelin B. Nickel, Margaret A. Olsen, Tiffany Hink +20 more

Genomic surveillance of Clostridioides difficile transmission and virulence in a healthcare setting

mBio(2024)10.1128/mbio.03300-23

N/A

0DataRank · unranked

13 citations

Skye R. S. Fishbein, Kailun Zhang, Tiffany Hink, Kimberly A. Reske, Candice Cass +6 more

Commensal-pathogen dynamics structure disease outcomes during Clostridioides difficile colonization

Cell Host & Microbe(2024)10.1016/j.chom.2024.12.002

N/A

0DataRank · unranked

10 citations

Anna L. DeVeaux, Sakshi Khanna, Aura Ferreiro, James Liao, Wesley Agee +12 more

Sequence-structure-function characterization of the emerging tetracycline destructase family of antibiotic resistance enzymes

Communications Biology(2024)10.1038/s42003-024-06023-w

N/A

0DataRank · unranked

7 citations

Hirdesh Kumar, A. Loganathan, Emily E. Williford, Luke Diorio‐Toth, Yao-Peng Xue +8 more

The tetracycline resistome is shaped by selection for specific resistance mechanisms by each antibiotic generation

Nature Communications(2025)10.1038/s41467-025-56425-5

N/A

0DataRank · unranked

56 citations

Yao-Peng Xue, Vincent J. Gillespie, Skye R. S. Fishbein, Niraj H. Tolia, Timothy A. Wencewicz +2 more

The effects of a prospective sink environmental hygiene intervention on Pseudomonas aeruginosa and Stenotrophomonas maltophilia burden in hospital sinks

EBioMedicine(2025)10.1016/j.ebiom.2025.105772

N/A

0DataRank · unranked

9 citations

Caroline A. O’Neil, Lucy Vogt, David W. McDonald, Candice Cass, Meghan A. Wallace +19 more

A Novel Focal Duodenal Radiation Injury Model Reveals Dose-, Time-, and Spatially Dependent Microbiome Perturbations After Radiation Injury

International Journal of Radiation Oncology*Biology*Physics(2025)10.1016/j.ijrobp.2025.11.011

N/A

0DataRank · unranked

1 citations

Jerome Prusa, Bin Wang, Lori Strong, Jie Ning, Erick S Ramirez Tovar +7 more

C10-Benzoate Esters of Anhydrotetracycline Inhibit Tetracycline Destructases and Recover Tetracycline Antibacterial Activity

ACS Infectious Diseases(2025)10.1021/acsinfecdis.4c00912

N/A

0DataRank · unranked

3 citations

Yao-Peng Xue, Wai Kwan Tang, Ruihao Li, Katherine V. Jones, Kevin S. Blake +7 more

The Gut Microbiome as a Reservoir for Antimicrobial Resistance

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa497

N/A

0DataRank · unranked

164 citations

Carey‐Ann D. Burnham, Gautam Dantas, Jennie H. Kwon, Winston Anthony

Understanding the impact of antibiotic perturbation on the human microbiome

Genome Medicine(2020)10.1186/s13073-020-00782-x

N/A

0DataRank · unranked

318 citations

Amy Langdon, Gautam Dantas, Drew J. Schwartz

Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms

Nature Communications(2020)10.1038/s41467-020-15222-y

N/A

0DataRank · unranked

294 citations

Xiao‐Ping Liao, Alaric W. D’Souza, Manish Boolchandani, Shenghui Li, Ke Cheng +21 more

The microbiome and resistome of chimpanzees, gorillas, and humans across host lifestyle and geography

The ISME Journal(2020)10.1038/s41396-020-0634-2

N/A

0DataRank · unranked

138 citations

Xiaoqing Sun, Vishal H Patel, Crickette Sanz, David Morgan, Gautam Dantas +1 more

The gut microbiome defines social group membership in honey bee colonies

Science Advances(2020)10.1126/sciadv.abd3431

N/A

0DataRank · unranked

132 citations

Iris M. Chin, Boahemaa Adu‐Oppong, Joshua J. Krupp, Joel D. Levine, Gautam Dantas +2 more

Antimicrobial resistance in enteric bacteria: current state and next-generation solutions

Gut Microbes(2020)10.1080/19490976.2020.1799654

N/A

0DataRank · unranked

74 citations

Skye R. S. Fishbein, Gautam Dantas, Miranda J. Wallace

Microbiome Restoration by RBX2660 Does Not Preclude Recurrence of Multidrug-Resistant Urinary Tract Infection Following Subsequent Antibiotic Exposure: A Case Report

Open Forum Infectious Diseases(2020)10.1093/ofid/ofaa042

N/A

0DataRank · unranked

7 citations

Preston Tasoff, Tiffany Hink, Kimberly A. Reske, Carey‐Ann D. Burnham, Gautam Dantas +3 more

Genomic Characterization of Emerging Bacterial Uropathogen Neisseria meningitidis, Which Was Misidentified as Neisseria gonorrhoeae by Nucleic Acid Amplification Testing

Journal of Clinical Microbiology(2020)10.1128/jcm.01699-20

N/A

0DataRank · unranked

29 citations

Sophonie Jean, Meghan A. Wallace, Neil W. Anderson, Carey‐Ann D. Burnham, Gautam Dantas +1 more

Prairie plants harbor distinct and beneficial root-endophytic bacterial communities

PLoS ONE(2020)10.1371/journal.pone.0234537

N/A

0DataRank · unranked

3 citations

Scott A. Mangan, Cláudia Stein, Christopher P. Catano, Jonathan A. Myers, Gautam Dantas +1 more

Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections

Gut Microbes(2021)10.1080/19490976.2021.1940792

N/A

0DataRank · unranked

34 citations

Anna Thänert, Jocelyn Ou, Adam Bajinting, Carey‐Ann D. Burnham, Holly J. Engelstad +12 more

Assessment of the Urinary Microbiota of MSM Using Urine Culturomics Reveals a Diverse Microbial Environment

Clinical Chemistry(2021)10.1093/clinchem/hvab199

N/A

0DataRank · unranked

7 citations

Caitlin Johnson, Angela Shupe, Jeremy D. Fine, Gautam Dantas, Carey‐Ann D. Burnham +2 more

Spontaneous Bacterial Peritonitis Caused by Bordetella hinzii

Emerging infectious diseases(2021)10.3201/eid2711.211428

N/A

0DataRank · unranked

5 citations

Miranda J. Wallace, Gayathri Krishnan, Patrick D. Olson, Abigail L. Carlson, Gautam Dantas +2 more

Pathogenic potential in catheter-associated Escherichia coli is associated with separable biofilm and virulence gene determinants

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.16.452752

N/A

0DataRank · unranked

0 citations

Robert F. Potter, William H. McCoy, George L. Katumba, Peter J. Mucha, Gautam Dantas +2 more

High-resolution Structural and Thermodynamic Analysis of Extreme Stabilization of Human Procarboxypeptidase by Computational Protein Design

UNC Libraries(2021)10.17615/z2r0-qc76

N/A

0DataRank · unranked

0 citations

Ziad M. Eletr, Gautam Dantas, James J. Havranek, E.A. Merritt, Gabriele Varani +5 more