🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Dima Kozakov

Stony Brook University

ORCID: 0000-0003-0464-4500

Also affiliated with The University of Texas at Austin

Biochemistry, Genetics and Molecular BiologyComputer ScienceMaterials ScienceMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
4.8Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Papers

Driven by 20 papers — median percentile 89. Top paper: “Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment”.

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26222
Top 9%
2.3DataRank
Top 9%127 citations

Guillaume Brysbaert, Théo Mauri, Nurul Nadzirin, Sameer Velankar, Raphaël A. G. Chaleil +95 more

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26609
Top 11%
1.9DataRank
Top 11%81 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

A critical overview of computational approaches employed for COVID-19 drug discovery

Chemical Society Reviews(2021)10.1039/d0cs01065k
N/A
0.804DataRank · unranked
212 citations

Rommie E. Amaro, Carolina Horta Andrade, Nathan Brown, Sean Ekins, Denis Fourches +14 more

Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment

Utrecht University Repository (Utrecht University)(2023)10.22541/au.168888815.53957253/v1
Top 36%
0.540DataRank
Top 36%17 citations

Guillaume Brysbaert, Nessim Raouraoua, Paul A. Bates, Marco Giulini, Rodrigo V. Honorato +95 more

Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT

Nature Communications(2023)10.1038/s41467-023-36122-x
N/A
0.510DataRank · unranked
29 citations

Dante Bolzan, Ahmed Youssef, Keith A. Gagnon, Heather Hook, Gopal Karemore +17 more

MHC-Fine: Fine-tuned AlphaFold for precise MHC-peptide complex prediction

Biophysical Journal(2024)10.1016/j.bpj.2024.05.011
N/A
0.434DataRank · unranked
17 citations

Dmytro Kalitin, Darya Stepanenko, Y. Zhu, Thu Nguyen, George Jones +8 more

Phospho-Tune: Enhanced Structural Modeling of Phosphorylated Protein Interactions

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.29.582580
N/A
0.312DataRank · unranked
7 citations

Veranika Averkava, Sergei Kotelnikov, Darya Stepanenko, Thu Nguyen, Julie C. Mitchell +6 more

Identification of actionable targeted protein degradation effector sites through Site-specific Ligand Incorporation-induced Proximity (SLIP)

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.04.636303
N/A
0.104DataRank · unranked
1 citations

Efthymios Spyridon Gavriil, Fangyuan Cao, Xinyue Zhang, Stan Xiaogang Li, Sergei Kotelnikov +9 more

Identification of Actionable Targeted Protein Degradation Effector Sites through Site-Specific Ligand Incorporation-Induced Proximity (SLIP)

Journal of the American Chemical Society(2025)10.1021/jacs.5c01420
N/A
0DataRank · unranked
7 citations

Efthymios-Spyridon Gavriil, Fangyuan Cao, Xinyue Zhang, Stan Xiaogang Li, Sergei Kotelnikov +9 more

Conventional and non-conventional antigen-binding sites promote the development and function of chronic lymphocytic leukemia stereotyped subset #4 clones

Frontiers in Immunology(2025)10.3389/fimmu.2025.1607189
N/A
0DataRank · unranked
1 citations

Dzmitry Padhorny, Rosa Catera, Antonella Nicolò, Xiao‐Jie Yan, Stan Xiaogang Li +15 more

CACHE Challenge #3: Targeting the Nsp3 Macrodomain of SARS-CoV-2

ChemRxiv(2025)10.26434/chemrxiv-2025-d1v7v
N/A
0DataRank · unranked
0 citations

Madhushika Silva, G.J. Correy, Abd Al‐Aziz A. Abu‐Saleh, Suzanne Ackloo, C. Arrowsmith +74 more

Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2

Molecular Cell(2020)10.1016/j.molcel.2020.11.028
N/A
0DataRank · unranked
131 citations

Adam J. Hume, Raghuveera Kumar Goel, Kristine M. Abo, Jessie Huang, Benjamin C. Blum +45 more

Photo-proximity labeling in live primary neurons identifies an AMPA-receptor signal transducer in homeostatic synaptic plasticity

Cell chemical biology(2025)10.1016/j.chembiol.2025.11.006
N/A
0DataRank · unranked
0 citations

Tian Yuan, Sergei Kotelnikov, Gabriel Cohn, Sadhna Phanse, Dima Kozakov +3 more

Improved cluster ranking in protein–protein docking using a regression approach

Computational and Structural Biotechnology Journal(2021)10.1016/j.csbj.2021.04.028
N/A
0DataRank · unranked
9 citations

Israel Desta, Nasser Hashemi, Shahrooz Zarbafian, Dima Kozakov, Pirooz Vakili +3 more

Light-mediated multi-target protein degradation using arylazopyrazole photoswitchable PROTACs (AP-PROTACs)

Chemical Communications(2022)10.1039/d2cc03092f
N/A
0DataRank · unranked
52 citations

Cyrille S. Kounde, Milon Mondal, Jake L. Greenfield, Jennifer R. Baker, Sergei Kotelnikov +11 more

Mapping of antibody epitopes based on docking and homology modeling

Proteins Structure Function and Bioinformatics(2022)10.1002/prot.26420
N/A
0DataRank · unranked
24 citations

Sergei Kotelnikov, George Jones, Usman Ghani, Mikhail Abyzov, Yaroslav Kholodov +6 more

Improved Predictions of MHC-Peptide Binding using Protein Language Models

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.11.479844
N/A
0DataRank · unranked
4 citations

Boran Hao, Mikhail Ignatov, Ioannis Ch. Paschalidis, Pirooz Vakili, Sándor Vajda +2 more

Improved prediction of MHC-peptide binding using protein language models

Frontiers in Bioinformatics(2023)10.3389/fbinf.2023.1207380
N/A
0DataRank · unranked
19 citations

Boran Hao, Mikhail Ignatov, Ioannis Ch. Paschalidis, Pirooz Vakili, Sándor Vajda +2 more

MHC-Fine: Fine-tuned AlphaFold for Precise MHC-Peptide Complex Prediction

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.29.569310
N/A
0DataRank · unranked
11 citations

Dmytro Kalitin, Darya Stepanenko, Y. Zhu, Thu Nguyen, George Jones +7 more

A critical overview of computational approaches employed for COVID-19 drug discovery

UNC Libraries(2024)10.17615/bwe6-fp72
N/A
0DataRank · unranked
5 citations

Kenneth M. Merz, Matthew H. Todd, José L. Medina‐Franco, Sean Ekins, Alexey Zakharov +14 more