🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Justin Chu

Roche (Sweden)

ORCID: 0000-0003-0549-4997
Biochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesComputer ScienceEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
8.3Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x
Top 4%
5.1DataRank
Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Papers

Driven by 17 papers — median percentile 92. Top paper: “A draft human pangenome reference”.

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x
Top 4%
5.1DataRank
Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w
N/A
5.0DataRank · unranked
318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

Tigmint: correcting assembly errors using linked reads from large molecules

BMC Bioinformatics(2018)10.1186/s12859-018-2425-6
N/A
3.3DataRank · unranked
138 citations

Lauren Coombe, Justin Chu, Rene L. Warren, Benjamin P. Vandervalk, Sarah Yeo +6 more

A Draft Human Pangenome Reference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499321
Top 8%
2.9DataRank
Top 8%74 citations

Mobin Asri, Daniel Doerr, Eoghan Harrington, Hickey, Glenn, Julian K. Lucas +47 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y
N/A
2.1DataRank · unranked
114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

Konnector v2.0: pseudo-long reads from paired-end sequencing data

BMC Medical Genomics(2015)10.1186/1755-8794-8-s3-s1
N/A
0.730DataRank · unranked
23 citations

Chen Yang, Zhuyi Xue, Karthika Raghavan, Justin Chu, Hamid Mohamadi +5 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y
N/A
0.710DataRank · unranked
113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

Bioinformatics(2020)10.1093/bioinformatics/btaa253
N/A
0.571DataRank · unranked
44 citations

Vladimir Nikolić, Justin Chu, Inanc Birol, René L. Warren, Lauren Coombe

De novo reconstruction of satellite repeat units from sequence data

Genome Research(2023)10.1101/gr.278005.123
N/A
0.538DataRank · unranked
35 citations

Justin Chu, Haoyu Cheng, Alexandra P. Lewis, Yujie Zhang

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543
Top 50%
0.352DataRank
Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

ntsm: an alignment-free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.01.565041
N/A
0.104DataRank · unranked
1 citations

Jiazhen Rong, Xiaowen Feng, Alexandra P. Lewis, Justin Chu

Physlr: Next-Generation Physical Maps

DNA(2022)10.3390/dna2020009
N/A
0DataRank · unranked
7 citations

Shaun D. Jackman, Johnathan Wong, Lauren Coombe, Justin Chu, Vladimir Nikolić +5 more

RResolver: efficient short-read repeat resolution within ABySS

BMC Bioinformatics(2022)10.1186/s12859-022-04790-z
N/A
0DataRank · unranked
1 citations

Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip +3 more

GapPredict – A Language Model for Resolving Gaps in Draft Genome Assemblies

IEEE/ACM Transactions on Computational Biology and Bioinformatics(2021)10.1109/tcbb.2021.3109557
N/A
0DataRank · unranked
7 citations

Justin Chu, Jessica Zhang, René L. Warren, Inanc Birol, Eric Chen

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes

Genome Research(2020)10.1101/gr.260174.119
N/A
0DataRank · unranked
104 citations

Readman Chiu, Chen Yang, Justin Chu, Hamid Mohamadi, René L. Warren +2 more

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.13.905240
N/A
0DataRank · unranked
1 citations

Vladimir Nikolić, Justin Chu, Inanc Birol, René L. Warren, Lauren Coombe

btllib: A C++ library with Python interface forefficient genomic sequence processing

The Journal of Open Source Software(2022)10.21105/joss.04720
N/A
0DataRank · unranked
12 citations

Parham Kazemi, Lauren Coombe, Johnathan Wong, Amirhossein Afshinfard, Justin Chu +3 more