Paul C. Boutros

Also affiliated with Sanford Burnham Prebys Medical Discovery Institute, Discovery Institute, Los Angeles Medical Center, Precision for Medicine (United States), Broad Center

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

15.1Author DataRank

Indexed papers

12in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 12 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Papers

Driven by 107 papers — median percentile 51. Top paper: “The repertoire of mutational signatures in human cancer”.

The repertoire of mutational signatures in human cancer

Nature(2020)10.1038/s41586-020-1943-3

N/A

10.7DataRank · unranked

3715 citations

Jaegil Kim, Nicholas J. Haradhvala, Mi Ni Huang, Alvin Wei Tian Ng, Yang Wu +74 more

A robust benchmark for detection of germline large deletions and insertions

Nature Biotechnology(2020)10.1038/s41587-020-0538-8

N/A

10.3DataRank · unranked

486 citations

Nancy F. Hansen, Nathan D. Olson, Lesley M. Chapman, James C. Mullikin, Chunlin Xiao +45 more

Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing

Nature Genetics(2020)10.1038/s41588-019-0576-7

N/A

8.1DataRank · unranked

783 citations

Jake June-Koo Lee, Ruibin Xi, Dhawal Jain, Youngsook L. Jung, Lixing Yang +89 more

Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

Cell(2021)10.1016/j.cell.2021.03.009

N/A

7.3DataRank · unranked

560 citations

Ignaty Leshchiner, Kerstin Haase, Maxime Tarabichi, Jeff Wintersinger, Amit G. Deshwar +64 more

Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition

Nature Genetics(2020)10.1038/s41588-019-0562-0

N/A

7.0DataRank · unranked

483 citations

Eva G. Alvarez, Adrian Baez‐Ortega, Jorge Zamora, Fran Supek, Jonas Demeulemeester +80 more

Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer

Nature Genetics(2020)10.1038/s41588-019-0564-y

N/A

5.9DataRank · unranked

312 citations

Victoria T. Le, Sahaana Chandran, Yilong Li, Roel G.W. Verhaak, Rameen Beroukhim +91 more

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

Sex differences in oncogenic mutational processes

Nature Communications(2020)10.1038/s41467-020-17359-2

N/A

4.2DataRank · unranked

128 citations

Stephenie D. Prokopec, Ren Sun, Fouad Yousif, Nathaniel Schmitz, Fátima Al‐Shahrour +90 more

A community effort to create standards for evaluating tumor subclonal reconstruction

Nature Biotechnology(2020)10.1038/s41587-019-0364-z

N/A

2.8DataRank · unranked

100 citations

Adriana Salcedo, Maxime Tarabichi, Shadrielle M. G. Espiritu, Amit G. Deshwar, Matei David +28 more

High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

Nature Communications(2020)10.1038/s41467-019-13885-w

Top 13%

1.6DataRank

Top 13%76 citations

Fengju Chen, Nuno A. Fonseca, Yao He, Masashi Fujita, Hidewaki Nakagawa +91 more

Community Assessment of the Predictability of Cancer Protein and Phosphoprotein Levels from Genomics and Transcriptomics

Cell Systems(2020)10.1016/j.cels.2020.06.013

N/A

1.1DataRank · unranked

32 citations

Francesca Petralia, Zhi Li, Hongyang Li, Weiping Ma, Xiaoyu Song +87 more

Identification of intraductal carcinoma of the prostate on tissue specimens using Raman micro-spectroscopy: A diagnostic accuracy case–control study with multicohort validation

PLoS Medicine(2020)10.1371/journal.pmed.1003281

N/A

1.1DataRank · unranked

39 citations

F. Dallaire, Tien Thanh Nguyen, Mirela Birlea, Jahg Wong, François Daoust +23 more

The evolutionary history of 2,658 cancers

Nature(2020)10.1038/s41586-019-1907-7

N/A

1.1DataRank · unranked

1106 citations

Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Daniel Rosebrock +59 more

Fumarate hydratase variant prevalence and manifestations among individuals receiving germline testing

Cancer(2021)10.1002/cncr.33997

Top 21%

0.973DataRank

Top 21%31 citations

Kathryn E. Hatchell, Sarah M. Nielsen, Edward D. Esplin, Karen Ouyang, Keith Nykamp +8 more

Somatic driver mutation prevalence in 1844 prostate cancers identifies ZNRF3 loss as a predictor of metastatic relapse

Nature Communications(2021)10.1038/s41467-021-26489-0

N/A

0.867DataRank · unranked

27 citations

Julie Livingstone, Jeffrey L. Wrana, Antonio Finelli, Housheng Hansen He, Theodorus Van der Kwast +4 more

Quantifying the influence of mutation detection on tumour subclonal reconstruction

Nature Communications(2020)10.1038/s41467-020-20055-w

N/A

0.791DataRank · unranked

21 citations

Vinayak Bhandari, Adriana Salcedo, Shadrielle M. G. Espiritu, Quaid Morris, Thomas Kislinger +2 more

Precision Radiotherapy: Reduction in Radiation for Oropharyngeal Cancer in the 30 ROC Trial

JNCI Journal of the National Cancer Institute(2020)10.1093/jnci/djaa184

N/A

0.762DataRank · unranked

160 citations

Eric J. Sherman, Xin Pei, Heiko Schöder, Milan Grkovski, Ramesh Paudyal +38 more

The Mutational Landscape of Metastatic Castration-sensitive Prostate Cancer: The Spectrum Theory Revisited

European Urology(2021)10.1016/j.eururo.2020.12.040

N/A

0.692DataRank · unranked

100 citations

Kim Van der Eecken, Ryan Phillips, Neil R. Parikh, Pedro Isaacsson Velho, Tamara L. Lotan +19 more

The genomic and evolutionary landscapes of anaplastic thyroid carcinoma

Cell Reports(2024)10.1016/j.celrep.2024.113826

N/A

0.652DataRank · unranked

76 citations

Stephenie D. Prokopec, Stephen Y. Lai, Nicole Pinto, Michelle Chan‐Seng‐Yue, Roderick Clifton‐Bligh +64 more

Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression

Nature Biotechnology(2022)10.1038/s41587-022-01342-x

N/A

0.652DataRank · unranked

76 citations

Jennifer Wang, Shuangxi Ji, Yang Peng, Yaoyi Dai, Shuai Guo +35 more

The 5-Hydroxymethylcytosine Landscape of Prostate Cancer

Cancer Research(2022)10.1158/0008-5472.can-22-1123

N/A

0.635DataRank · unranked

68 citations

Shuang G. Zhao, Samuel Levy, Meng Zhang, Yuhong Ning, Raunak Shrestha +58 more

Genomic evolution shapes prostate cancer disease type

Cell Genomics(2024)10.1016/j.xgen.2024.100511

N/A

0.613DataRank · unranked

16 citations

Atef Sahli, Ruxandra Teslo, Vinayak Bhandari, Andreas Gruber, Aleksandra Ziubroniewicz +31 more

Fumarate Hydratase Variants and Their Association With Paraganglioma/Pheochromocytoma

Urology(2023)10.1016/j.urology.2022.11.053

Top 33%

0.592DataRank

Top 33%10 citations

Eric Lu, Paul C. Boutros, Liying Zhang, Avital Harari, Kathryn E. Hatchell +8 more

A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery

Cell Systems(2021)10.1016/j.cels.2021.05.021

N/A

0.564DataRank · unranked

42 citations

David Haan, Kristen D. Dang, Kami Chiotti, Matthew Inkman, Andrew Lamb +32 more

Sex differences in oncogenic mutational processes

White Rose Research Online (University of Leeds, The University of Sheffield, University of York)(2020)10.17863/cam.57292

N/A

0.564DataRank · unranked

7 citations

Stephenie D. Prokopec, Hong Su, Fouad Yousif, Nathaniel Schmitz, Paul C. Boutros +11 more

Prostate lineage-specific metabolism governs luminal differentiation and response to antiandrogen treatment

Nature Cell Biology(2023)10.1038/s41556-023-01274-x

N/A

0.546DataRank · unranked

37 citations

Preston D. Crowell, Amelie M.L. Delcourt, Takao Hashimoto, Sung Min Ha, Aishwarya Atmakuri +17 more

Extracellular vesicle heterogeneity through the lens of multiomics

Cell Reports Medicine(2025)10.1016/j.xcrm.2025.102161

N/A

0.533DataRank · unranked

34 citations

Elizabeth Hutchins, Wenyan Zhao, Yari Ciani, Minhyung Kim, Emily Ko +25 more

Distinguishing Benign Renal Tumors with an Oncocytic Gene Expression (ONEX) Classifier

European Urology(2020)10.1016/j.eururo.2020.09.017

N/A

0.494DataRank · unranked

26 citations

Daiki Ueno, Aydin Pooli, Neil Mendhiratta, Jamil Syed, Kevin A. Nguyen +6 more

Impact of PSMA PET on Prostate Cancer Management

Current Treatment Options in Oncology(2024)10.1007/s11864-024-01181-9

N/A

0.434DataRank · unranked

17 citations

Raag Agrawal, Luca Valle, Ida Sonni, Amar U. Kishan, Matthew B. Rettig +5 more

Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction

Nature Biotechnology(2024)10.1038/s41587-024-02250-y

Top 46%

0.396DataRank

Top 46%13 citations

Maxime Tarabichi, Alex Buchanan, Shadrielle M. G. Espiritu, Hongjiu Zhang, Kaiyi Zhu +83 more

A polygenic two-hit hypothesis for prostate cancer

JNCI Journal of the National Cancer Institute(2023)10.1093/jnci/djad001

N/A

0.360DataRank · unranked

10 citations

Julie Livingstone, Natalie S. Fox, Natalie J. Kurganovs, Helen He Zhu, Jocelyn Sietsma Penington +16 more

Comprehensive Prostate Fluid-Based Spectral Libraries for Enhanced Protein Detection in Urine

Journal of Proteome Research(2024)10.1021/acs.jproteome.4c00009

N/A

0.345DataRank · unranked

9 citations

Amanda Khoo, Vladimir Ignatchenko, Shahbaz Khan, Matthew Waas, Danny Vesprini +6 more

Methylation Subtypes of Primary Prostate Cancer Predict Poor Prognosis

Cancer Epidemiology Biomarkers & Prevention(2022)10.1158/1055-9965.epi-22-0007

N/A

0.345DataRank · unranked

9 citations

Kristina M. Jordahl, Chenghao Zhu, Julie Livingstone, Suhn K. Rhie, Jonathan L. Wright +5 more

Targeting PLOD2 suppresses invasion and metastatic potential in radiorecurrent prostate cancer

BJC Reports(2024)10.1038/s44276-024-00085-3

Top 51%

0.343DataRank

Top 51%7 citations

Hon S. Leong, Roni Haas, Xiaoyong Huang, Jessica Wright, Urban Emmenegger +5 more

Small variant benchmark from a complete assembly of X and Y chromosomes

Nature Communications(2025)10.1038/s41467-024-55710-z

Top 54%

0.312DataRank

Top 54%7 citations

Nathan D. Olson, Jennifer McDaniel, Lindsay Harris, Brendan J. Pinto, David Jáspez +22 more

Identification of non-canonical peptides with moPepGen

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.28.587261

N/A

0.269DataRank · unranked

5 citations

Lydia Liu, Annie Ha, Takafumi N. Yamaguchi, Helen Zhu, Rupert Hugh-White +5 more

Multimodal Biomarkers That Predict the Presence of Gleason Pattern 4: Potential Impact for Active Surveillance

The Journal of Urology(2023)10.1097/ju.0000000000003507

N/A

0.269DataRank · unranked

5 citations

Alan Yiu Wah Lee, Robert Lesurf, Pratik Patel, Walead Ebrahimizadeh, Jane Bayani +30 more

External Beam Radiation Therapy With or Without Brachytherapy Boost in Men With Very-High-Risk Prostate Cancer: A Large Multicenter International Consortium Analysis

International Journal of Radiation Oncology*Biology*Physics(2022)10.1016/j.ijrobp.2022.09.075

N/A

0.269DataRank · unranked

5 citations

Ting Martin, J.K. Wong, Bradley J. Stish, Robert T. Dess, Avinash Pilar +36 more

Transcriptomic Profiling of Primary Prostate Cancers and Nonlocalized Disease on Prostate-Specific Membrane Antigen Positron Emission Tomography/Computed Tomography: A Multicenter Retrospective Study

JCO Precision Oncology(2024)10.1200/po.24.00161

Top 60%

0.250DataRank

Top 60%2 citations

Kritika Subramanian, Nimrod Barashi Gozal, Andres Ricaurte‐Fajardo, Eric V. Li, James A. Proudfoot +20 more

Characterization of subclonal variants in HG002 Genome in a Bottle reference material as a resource for benchmarking variant callers

Cell Genomics(2025)10.1016/j.xgen.2025.101104

Top 65%

0.208DataRank

Top 65%3 citations

Adetola A. Abdulkadir, Megan H. Cleveland, Jennifer McDaniel, David Jáspez, Luis Alberto Rubio-Rodríguez +33 more

PipeVal: light-weight extensible tool for file validation

Bioinformatics(2024)10.1093/bioinformatics/btae079

N/A

0.208DataRank · unranked

3 citations

Arpi Beshlikyan, Madison Jordan, Gina Kim, Aaron Holmes, Takafumi N. Yamaguchi +2 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?

arXiv (Cornell University)(2023)10.48550/arxiv.2306.03255

N/A

0.165DataRank · unranked

2 citations

Andrei A. Ivanov, John Chamberlin, David A. Hanauer, Candace L. Savonen, Mary J. Goldman +22 more

The Telomere Length Landscape of Prostate Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.22.445239

N/A

0.140DataRank · unranked

1 citations

Yu-Jia Shiah, Takafumi N. Yamaguchi, Lawrence E. Heisler, Vincent Huang, Robert Lesurf +10 more

Crowd-sourced benchmarking of single-sample tumour subclonal reconstruction

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.14.495937

N/A

0.104DataRank · unranked

1 citations

Maxime Tarabichi, Alex Buchanan, Shadrielle M. G. Espiritu, Hongjiu Zhang, Kaiyi Zhu +24 more

iSubGen generates integrative disease subtypes by pairwise similarity assessment

Cell Reports Methods(2024)10.1016/j.crmeth.2024.100884

N/A

0.104DataRank · unranked

1 citations

Mao Tian, Alexander L Markowitz, Syed Haider, Constance H. Li, Paul C. Boutros +1 more

The Proteogenomics of Prostate Cancer Radioresistance

Cancer Research Communications(2024)10.1158/2767-9764.crc-24-0292

N/A

0DataRank · unranked

3 citations

Gavin Frame, Shahbaz Khan, Beth K. Neilsen, Boon Hao Hong, Celestia P.X. Yeo +26 more

Metapipeline-DNA: A Comprehensive Germline & Somatic Genomics Nextflow Pipeline

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.04.611267

N/A

0DataRank · unranked

5 citations

Chenghao Zhu, Takafumi N. Yamaguchi, Nicholas K. Wang, Nicholas Wiltsie, Nicole Zeltser +39 more

StableLift: Optimized Germline and Somatic Variant Detection Across Genome Builds

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.31.621401

N/A

0DataRank · unranked

2 citations

Nicholas Wiltsie, Helena Winata, Sorel Fitz‐Gibbon, Alfredo González, Nicole Zeltser +7 more

Quantifying the seed sensitivity of cancer subclonal reconstruction algorithms

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.05.579021

N/A

0DataRank · unranked

0 citations

Lydia Liu, Anna Neiman-Golden, Yash Patel, Paul C. Boutros, Philippa L. Steinberg

Increased frequency of clonal hematopoiesis of indeterminate potential in Bloom syndrome probands and carriers

Haematologica(2024)10.3324/haematol.2024.285239

N/A

0DataRank · unranked

0 citations

Angela Wei, Tsumugi Gebo, Paul C. Boutros, Maeve Flanagan, Nicole Kucine +4 more

Divergent Evolution in Bilateral Prostate Cancer: a Case Study

medRxiv(2024)10.1101/2024.08.22.24312320

N/A

0DataRank · unranked

0 citations

Yash Patel, Lydia Liu, Rong Huang, Adam B. Weiner, Takafumi N. Yamaguchi +4 more

Deletions Rate-Limit Breast and Ovarian Cancer Initiation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.17.618945

N/A

0DataRank · unranked

0 citations

Mahad Bihie, J Contreras, Daniel Jeremy Fulop, Gonzalo López, Hsin-Hsiung Huang +5 more

RNA transcripts serve as a template for double-strand break repair in human cells

Nature Communications(2025)10.1038/s41467-025-59510-x

N/A

0DataRank · unranked

9 citations

Alessandra Brambati, Hina Shah, Niamh McDermott, Juber Patel, Yingjie Zhu +21 more

Sex Differences in Cancer Functional Genomics: Gene Dependency and Drug Sensitivity

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.05.636540

N/A

0DataRank · unranked

1 citations

Chenghao Zhu, Jieun Oh, Constance H. Li, Paul C. Boutros, Nicole Zeltser

OGDHL regulates tumor growth, neuroendocrine marker expression, and nucleotide abundance in prostate cancer

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.28.656673

N/A

0DataRank · unranked

0 citations

Ángel Alberto Ruíz-Chow, Johnny A. Diaz, Nicholas M. Nunley, Rachel Dove, Shile Zhang +20 more

Ancestry-Dependent Immunologic and Prognostic Effects Characterize the Prostate Cancer Urinary Proteome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.14.670396

N/A

0DataRank · unranked

0 citations

Jaron Arbet, Zhuyu Qiu, Amanda Khoo, Brian P. Main, Meinusha Govindarajan +7 more

ApplyPolygenicScore: An R package for applying polygenic risk score models

Genetics in Medicine Open(2025)10.1016/j.gimo.2025.103467

N/A

0DataRank · unranked

0 citations

Rachel M. A. Dang, Rupert Hugh-White, Daniel Knight, Jaron Arbet, Paul C. Boutros +1 more

Neoadjuvant Antiandrogen Therapy With or Without MEK or SRC Inhibition for Unfavorable-risk Prostate Cancer: A Phase 2 Randomized Clinical Trial

European Urology Oncology(2025)10.1016/j.euo.2025.10.013

N/A

0DataRank · unranked

0 citations

Adam B. Weiner, Julie Livingstone, Aydin Pooli, Rong Huang, Huihui Ye +6 more

Joint Biochemical and Genetic Prostate Cancer Risk Stratification

The Journal of Urology(2025)10.1097/ju.0000000000004859

N/A

0DataRank · unranked

0 citations

Roni Haas, Christine Ibilibor, Jonathan Gelfond, Martin Goros, Teresa L. Johnson‐Pais +6 more

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

The landscape of RNA polymerase II–associated chromatin interactions in prostate cancer

Journal of Clinical Investigation(2020)10.1172/jci134260

N/A

0DataRank · unranked

62 citations

Yong Chen, Jiapei Yuan, Kelly Daescu, Maryou Lambros, Kathleen E. Houlahan +17 more

Flavopiridol causes cell cycle inhibition and demonstrates anti-cancer activity in anaplastic thyroid cancer models

PLoS ONE(2020)10.1371/journal.pone.0239315

N/A

0DataRank · unranked

17 citations

Stephenie D. Prokopec, Farhad Ghasemi, Jalna Meens, Kara M. Ruicci, Mohammed Imran Khan +13 more

Ancestry Influences on the Molecular Presentation of Tumours

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.02.233528

N/A

0DataRank · unranked

7 citations

Syed Haider, Paul C. Boutros, Constance H. Li

Tumor cell total mRNA expression shapes the molecular and clinical phenotype of cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.30.306795

N/A

0DataRank · unranked

5 citations

Jennifer Wang, Shuangxi Ji, Yang Peng, Matthew D. Montierth, Shuai Guo +32 more

Urinary biomarkers in prostate cancer: to the miRnome and beyond

Translational Andrology and Urology(2020)10.21037/tau.2019.11.25

N/A

0DataRank · unranked

0 citations

Renu Jeyapala, Paul C. Boutros, Bharati Bapat, Stanley K. Liu, Christianne Hoey

Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease

UNC Libraries(2020)10.17615/ka8q-bk87

Top 100%

0DataRank

Top 100%0 citations

Corrado Priami, Jimit Doshi, Roland Krause, Kong, Dehan, Aristeidis Sotiras +95 more

Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease

UNC Libraries(2020)10.17615/htpk-dq17

Top 100%

0DataRank

Top 100%0 citations

E.T. Merrill, Qilin Dong, Xia Shen, Laura Caberlotto, Arno Klein +95 more

Quantitative and Qualitative Analysis of Blood-based Liquid Biopsies to Inform Clinical Decision-making in Prostate Cancer

European Urology(2021)10.1016/j.eururo.2020.12.037

N/A

0DataRank · unranked

94 citations

Alejandro Athie, Paul C. Boutros, Marzia Del Re, David T. Miyamoto, Kenneth J. Pienta +6 more

CRISPRi screens reveal a DNA methylation-mediated 3D genome dependent causal mechanism in prostate cancer

Nature Communications(2021)10.1038/s41467-021-21867-0

N/A

0DataRank · unranked

66 citations

Fraser Soares, Ji‐Han Xia, Yue Yang, Jing Li, Haiyang Guo +27 more

All HPV-negative head and neck cancers are not the same: Analysis of the TCGA dataset reveals that anatomical sites have distinct mutation, transcriptome, hypoxia, and tumor microenvironment profiles

Oral Oncology(2021)10.1016/j.oraloncology.2021.105260

N/A

0DataRank · unranked

27 citations

Peter YF. Zeng, Mushfiq Hassan Shaikh, Neil Mundi, Farhad Ghasemi, Eric Di Gravio +14 more

The telomere length landscape of prostate cancer

Nature Communications(2021)10.1038/s41467-021-27223-6

N/A

0DataRank · unranked

26 citations

Yu-Jia Shiah, Takafumi N. Yamaguchi, Lawrence E. Heisler, Vincent Huang, Robert Lesurf +10 more

Sex Differences in Cancer Genomes: Much Learned, More Unknown

Endocrinology(2021)10.1210/endocr/bqab170

N/A

0DataRank · unranked

18 citations

Paul C. Boutros, Chenghao Zhu

3p Arm Loss and Survival in Head and Neck Cancer: An Analysis of TCGA Dataset

Cancers(2021)10.3390/cancers13215313

N/A

0DataRank · unranked

11 citations

Mushfiq Hassan Shaikh, Mark Lee, Peter YF. Zeng, Alana Sorgini, Temitope Akintola +17 more

Drug screening at single-organoid resolution via bioprinting and interferometry

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.03.462896

N/A

0DataRank · unranked

6 citations

Bowen Wang, Alexander L Markowitz, Ardalan Davarifar, Patrycja Krawczuk, Graeme Murray +7 more

Tumor cell total mRNA expression shapes the molecular and clinical phenotype of cancer

Research Square(2021)10.21203/rs.3.rs-600171/v1

N/A

0DataRank · unranked

2 citations

Jennifer Wang, Shuangxi Ji, Yang Peng, Matthew D. Montierth, Shuai Guo +32 more

Molecular Profiles of Prostate Cancer in Men of Middle Eastern Ancestry Identifies Key Differences with Western Populations: A Multiethnic SNP Array Study

Preprints.org(2021)10.20944/preprints202102.0605.v1

N/A

0DataRank · unranked

0 citations

Julie Livingstone, Saeeda Al Marzooqi, Kathleen E. Houlahan, Aktham Awwad, Ramy A. Abdelsalam +3 more

iSubGen: Integrative Subtype Generation by Pairwise Similarity Assessment

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.13.444087

N/A

0DataRank · unranked

0 citations

Syed Haider, Constance H. Li, Paul C. Boutros, Natalie S. Fox

Age influences on the molecular presentation of tumours

Nature Communications(2022)10.1038/s41467-021-27889-y

N/A

0DataRank · unranked

103 citations

Syed Haider, Paul C. Boutros, Constance H. Li

Immune-based classification of HPV-associated oropharyngeal cancer with implications for biomarker-driven treatment de-intensification

EBioMedicine(2022)10.1016/j.ebiom.2022.104373

N/A

0DataRank · unranked

39 citations

Matthew J. Cecchini, John W. Barrett, Matthew Shammas‐Toma, Loris De Cecco, Mara Serena Serafini +38 more

Single-Cell Analysis in Lung Adenocarcinoma Implicates RNA Editing in Cancer Innate Immunity and Patient Prognosis

Cancer Research(2022)10.1158/0008-5472.can-22-1062

N/A

0DataRank · unranked

21 citations

Jack Dodson, Jaron Arbet, Paul C. Boutros, Xinshu Xiao, Tracey W. Chan

The proteomic landscape of glioblastoma recurrence reveals novel and targetable immunoregulatory drivers

Acta Neuropathologica(2022)10.1007/s00401-022-02506-4

N/A

0DataRank · unranked

33 citations

Shahbaz Khan, Julie Livingstone, Kui Zhai, Dillon McKenna, Vladimir Ignatchenko +23 more

Data-driven identification of inherent features of eukaryotic stress-responsive genes

NAR Genomics and Bioinformatics(2022)10.1093/nargab/lqac018

N/A

0DataRank · unranked

10 citations

René Böttcher, Mariona Nadal‐Ribelles, Constance H. Li, Carme Solé, Gerard Martínez-Cebrián +4 more

Prostate cancer multiparametric magnetic resonance imaging visibility is a tumor-intrinsic phenomena

Journal of Hematology & Oncology(2022)10.1186/s13045-022-01268-6

N/A

0DataRank · unranked

16 citations

Lydia Liu, Taylor Y. Sadun, Amirali Salmasi, Aydin Pooli, Ely Felker +8 more

Introduction and expression of PIK3CAE545K in a papillary thyroid cancer BRAFV600E cell line leads to a dedifferentiated aggressive phenotype

Journal of Otolaryngology - Head and Neck Surgery(2022)10.1186/s40463-022-00558-w

N/A

0DataRank · unranked

13 citations

Kara M. Ruicci, Mohammed Imran Khan, Mushfiq Hassan Shaikh, Yu Fan Peter Zeng, John Yoo +8 more

Prostate Cancer Transcriptomic Regulation by the Interplay of Germline Risk Alleles, Somatic Mutations, and 3D Genomic Architecture

Cancer Discovery(2022)10.1158/2159-8290.cd-22-0027

N/A

0DataRank · unranked

10 citations

Kathleen E. Houlahan, Susmita G. Ramanand, Sora Lee, GuemHee Baek, Yang Yang +6 more

Perish and publish: Dynamics of biomedical publications by deceased authors

PLoS ONE(2022)10.1371/journal.pone.0273783

N/A

0DataRank · unranked

7 citations

Paul C. Boutros, Daniel J. Park, Niall M. Corcoran, Bernard J. Pope, Christopher M. Hovens +1 more

Establishment of four head and neck squamous cell carcinoma cell lines: importance of reference DNA for accurate genomic characterisation

The Journal of Laryngology & Otology(2022)10.1017/s0022215122000846

N/A

0DataRank · unranked

1 citations

Stephenie D. Prokopec, John W. Barrett, Joe S. Mymryk, Paul C. Boutros, Anthony C. Nichols +1 more

Exome-wide association study to identify rare variants influencing COVID-19 outcomes: Results from the Host Genetics Initiative

medRxiv(2022)10.1101/2022.03.28.22273040

N/A

0DataRank · unranked

7 citations

Gundula Povysil, Jack A. Kosmicki, Elizabeth T. Cirulli, Theodore G. Drivas, Simone Furini +95 more

A Clinically Translatable Immune-based Classification of HPV-associated Head and Neck Cancer with Implications for Biomarker-Driven Treatment Deintensification and Immunotherapy

medRxiv(2022)10.1101/2022.02.26.22271531

N/A

0DataRank · unranked

0 citations

Matthew J. Cecchini, John W. Barrett, Matthew Shammas‐Toma, Loris De Cecco, Mara Serena Serafini +38 more

Germline determinants of the prostate tumor genome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.16.516773

N/A

0DataRank · unranked

0 citations

Jiapei Yuan, Tommer Schwarz, Julie Livingstone, Natalie S. Fox, Weerachai Jaratlerdsiri +36 more

Drug screening at single-organoid resolution via bioprinting and interferometry

Nature Communications(2023)10.1038/s41467-023-38832-8

N/A

0DataRank · unranked

139 citations

Bowen Wang, Alexander L Markowitz, Ardalan Davarifar, Brandon L. Tsai, Patrycja Krawczuk +10 more

MYC is a regulator of androgen receptor inhibition-induced metabolic requirements in prostate cancer

Cell Reports(2023)10.1016/j.celrep.2023.113221

N/A

0DataRank · unranked

33 citations

Jenna M. Giafaglione, Anthony E. Jones, Nicholas M. Nunley, Takao Hashimoto, Amelie M.L. Delcourt +20 more

Prostate-Specific Antigen Response to Androgen Deprivation Therapy in the Neoadjuvant Setting for High-Risk Prostate Adenocarcinoma (PIRANHA): Pooled Analysis of Two Randomized Clinical Trials

International Journal of Radiation Oncology*Biology*Physics(2023)10.1016/j.ijrobp.2023.12.022

N/A

0DataRank · unranked

4 citations

Wee Loon Ong, Nathalie Carrier, Tahmineh Romero, Jeremy Millar, Michael L. Steinberg +14 more

HPV‐negative head and neck cancers with adverse pathological features carry specific molecular changes that are associated with survival

Head & Neck(2023)10.1002/hed.27591

N/A

0DataRank · unranked

2 citations

Peter YF. Zeng, Matthew J. Cecchini, Mushfiq Hassan Shaikh, Francisco Laxague, Xiaoxiao Deng +12 more

Serrate RNA Effector Molecule (SRRT) Is Associated with Prostate Cancer Progression and Is a Predictor of Poor Prognosis in Lethal Prostate Cancer

Cancers(2023)10.3390/cancers15102867

N/A

0DataRank · unranked

1 citations

Muhammad Choudhry, Qiaowang Li, Jon Rokne, Reda Alhajj, Ramy A. Abdelsalam +5 more

The genomic and evolutionary landscapes of anaplastic thyroid carcinoma

medRxiv(2023)10.1101/2023.04.10.23288365

N/A

0DataRank · unranked

4 citations

Stephenie D. Prokopec, Stephen Y. Lai, Nicole Pinto, Michelle Chan‐Seng‐Yue, Roderick Clifton‐Bligh +64 more

Prostate Cancer Reshapes the Secreted and Extracellular Vesicle Urinary Proteomes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.23.550214

N/A

0DataRank · unranked

4 citations

Meinusha Govindarajan, Zhuyu Qiu, Lydia Liu, Vladimir Ignatchenko, Matthew Waas +13 more

Glioblastoma evolution and heterogeneity from a 3D whole-tumor perspective

Cell(2024)10.1016/j.cell.2023.12.013

N/A

0DataRank · unranked

207 citations

Qixuan Wang, Patrick G. Schupp, Ana Nikolić, Stephanie Hilz, Chibo Hong +25 more

The landscape of drug sensitivity and resistance in sarcoma

Cell stem cell(2024)10.1016/j.stem.2024.08.010

N/A

0DataRank · unranked

61 citations

Peyton Tebon, Huyen Thi Lam Nguyen, Jomjit Chantharasamee, Sara Sartini, Ardalan Davarifar +26 more

Prostate cancer reshapes the secreted and extracellular vesicle urinary proteomes

Nature Communications(2024)10.1038/s41467-024-49424-5

N/A

0DataRank · unranked

31 citations

Meinusha Govindarajan, Zhuyu Qiu, Lydia Liu, Vladimir Ignatchenko, Matthew Waas +14 more

NFTest: automated testing of Nextflow pipelines

Bioinformatics(2024)10.1093/bioinformatics/btae081

N/A

0DataRank · unranked

22 citations

Chenghao Zhu, Takafumi N. Yamaguchi, Yuan Zhe Bugh, Mao Tian, Aaron Holmes +3 more

Molecular Hallmarks of Prostate-specific Membrane Antigen in Treatment-naïve Prostate Cancer

European Urology(2024)10.1016/j.eururo.2024.09.005

N/A

0DataRank · unranked

14 citations

Raag Agrawal, Nicholas K. Wang, Ida Sonni, Eric V. Li, Jaron Arbet +22 more

Best practices to evaluate the impact of biomedical research software—metric collection beyond citations

Bioinformatics(2024)10.1093/bioinformatics/btae469

N/A

0DataRank · unranked

6 citations

Andrei A. Ivanov, John Chamberlin, David A. Hanauer, Candace L. Savonen, M Goldman +22 more

Colibactin Exerts Androgen-dependent and -independent Effects on Prostate Cancer

European Urology Oncology(2024)10.1016/j.euo.2024.10.015

N/A

0DataRank · unranked

3 citations

Sarah M. Al-Hiyari, Rupert Hugh-White, Robert Hromas, Yash Patel, Elizabeth A. Williamson +17 more

Accelerated growth and local progression of radiorecurrent prostate cancer in an orthotopic bioluminescent mouse model

Scientific Reports(2024)10.1038/s41598-024-82546-w

N/A

0DataRank · unranked

1 citations

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