Ahmed Babiker

Also affiliated with University of Khartoum

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 39 papers. Top paper: “Fecal microbiota transplantation promotes reduction of antimicrobial resistance by strain replacement”.

Fecal microbiota transplantation promotes reduction of antimicrobial resistance by strain replacement

Science Translational Medicine(2023)10.1126/scitranslmed.abo2750

N/A

2.3DataRank · unranked

115 citations

Roth E. Conrad, Marina E Haldopoulos, Stephanie M. Pouch, Ahmed Babiker, Aneesh K. Mehta +23 more

Infection and mRNA-1273 vaccine antibodies neutralize SARS-CoV-2 UK variant

medRxiv(2021)10.1101/2021.02.02.21250799

N/A

0.590DataRank · unranked

50 citations

Katharine Floyd, Lilin Lai, Meredith E. Davis-Gardner, William Henry Hudson, Anne Piantadosi +10 more

Assessing the Potential for Unintended Microbial Consequences of Routine Chlorhexidine Bathing for Prevention of Healthcare-associated Infections

Clinical Infectious Diseases(2020)10.1093/cid/ciaa1103

N/A

0.500DataRank · unranked

27 citations

Joseph D. Lutgring, Scott K. Fridkin, Mary K. Hayden, Ahmed Babiker

Adjunctive linezolid versus clindamycin for toxin inhibition in β-lactam-treated patients with invasive group A streptococcal infections in 195 US hospitals from 2016 to 2021: a retrospective cohort study with target trial emulation

The Lancet Infectious Diseases(2024)10.1016/s1473-3099(24)00507-3

N/A

0.477DataRank · unranked

23 citations

Sarah Warner, Xiaobai Li, Emad A. Chishti, Eltaib Saad, Bruce Swihart +28 more

Assessing Clinician Utilization of Next-Generation Antibiotics Against Resistant Gram-Negative Infections in U.S. Hospitals

Annals of Internal Medicine(2024)10.7326/m23-2309

N/A

0.470DataRank · unranked

22 citations

Ahmed Ullah Mishuk, Guoqing Diao, Alexander Lawandi, Willy Li, Cumhur Y. Demirkale +10 more

Secondary Bacterial Pneumonias and Bloodstream Infections in Patients Hospitalized with COVID-19

Annals of the American Thoracic Society(2021)10.1513/annalsats.202009-1093rl

N/A

0.449DataRank · unranked

19 citations

Divya Bhamidipati, Alfonso C. Hernandez‐Romieu, Ahmed Babiker, Michael H. Woodworth, Chad Robichaux +5 more

Microbiota Transplantation Among Patients Receiving Long-Term Care

JAMA Network Open(2025)10.1001/jamanetworkopen.2025.22740

N/A

0.360DataRank · unranked

8 citations

Ahmed Babiker, Radhika Prakash-Asrani, C. Christina Mehta, Danielle Barrios Steed, Amanda Ashley +18 more

Association between piperacillin/tazobactam MIC and survival among hospitalized patients with Enterobacterales infections: retrospective cohort analysis of electronic health records from 161 US hospitals

JAC-Antimicrobial Resistance(2023)10.1093/jacamr/dlad041

N/A

0.312DataRank · unranked

7 citations

Alexander Lawandi, Sarah Warner, Cumhur Y. Demirkale, Sadia Sarzynski, Ahmed Babiker +3 more

Investigation of Blood Plasma Viral Nucleocapsid Antigen as a Marker of Active Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Variant Infection

Open Forum Infectious Diseases(2023)10.1093/ofid/ofad226

N/A

0.292DataRank · unranked

6 citations

Nils Schoof, Phuong-Vi Nguyen, Hans Verkerke, Eli Wilber, Kaleb McLendon +14 more

Infection- and vaccine-induced antibody binding and neutralization of the B.1.351 SARS-CoV-2 variant

Cell Host & Microbe(2021)10.1016/j.chom.2021.03.009

N/A

0DataRank · unranked

250 citations

Carson Norwood, Katharine Floyd, Lilin Lai, Meredith E. Davis-Gardner, William Henry Hudson +29 more

Single-Amplicon Multiplex Real-Time Reverse Transcription-PCR with Tiled Probes To Detect SARS-CoV-2 spike Mutations Associated with Variants of Concern

Journal of Clinical Microbiology(2021)10.1128/jcm.01446-21

N/A

0DataRank · unranked

30 citations

Katherine Immergluck, Samuel D. Stampfer, Anuradha Rao, Leda Bassit, Maxwell Su +14 more

Correlation of SARS-CoV-2 Subgenomic RNA with Antigen Detection in Nasal Midturbinate Swab Specimens

Emerging infectious diseases(2021)10.3201/eid2711.211135

N/A

0DataRank · unranked

16 citations

Mark D. Gonzalez, Jennifer K. Frediani, Joshua M. Levy, Janet Figueroa, Anna Wood +13 more

Outbreak of severe acute respiratory coronavirus virus 2 (SARS-CoV-2) in hospitalized hemodialysis patients: An epidemiologic and genomic investigation

Infection Control and Hospital Epidemiology(2021)10.1017/ice.2021.465

N/A

0DataRank · unranked

4 citations

Ahmed Babiker, Aaron Preston, Andrew S Webster, Jeannette Guarner, Kari Love +9 more

Reduced binding and neutralization of infection- and vaccine-induced antibodies to the B.1.351 (South African) SARS-CoV-2 variant

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.20.432046

N/A

0DataRank · unranked

42 citations

Carson Norwood, Katharine Floyd, Lilin Lai, Meredith E. Davis-Gardner, William Henry Hudson +29 more

Unrecognized introductions of SARS-CoV-2 into the state of Georgia shaped the early epidemic

medRxiv(2021)10.1101/2021.09.19.21262615

N/A

0DataRank · unranked

0 citations

Michael A. Martin, Charles Marvil, Stephanie Bellman, Robert A. Petit, Heath L. Bradley +8 more

SARS-CoV-2 Evolution and Immune Escape in Immunocompromised Patients

New England Journal of Medicine(2022)10.1056/nejmc2202861

N/A

0DataRank · unranked

110 citations

Ahmed Babiker, Max W. Adelman, Brent E. Allman, Autum Key, Jennifer Kleinhenz +18 more

Unrecognized introductions of SARS-CoV-2 into the US state of Georgia shaped the early epidemic

Virus Evolution(2022)10.1093/ve/veac011

N/A

0DataRank · unranked

5 citations

Michael A. Martin, Charles Marvil, Stephanie Bellman, Robert A. Petit, Heath L. Bradley +11 more

SARS-CoV-2 evolution and immune escape in immunocompromised patients treated with exogenous antibodies

medRxiv(2022)10.1101/2022.04.12.22273675

N/A

0DataRank · unranked

3 citations

Ahmed Babiker, Max W. Adelman, Brent E. Allman, Autum Key, Jennifer Kleinhenz +18 more

Maternal Colonization Versus Nosocomial Transmission as the Source of Drug-Resistant Bloodstream Infection in an Indian Neonatal Intensive Care Unit: A Prospective Cohort Study

Clinical Infectious Diseases(2023)10.1093/cid/ciad282

N/A

0DataRank · unranked

24 citations

Julia Johnson, Shilpa Naik, Sunil Patil, Rajesh Kulkarni, Aarti Kinikar +15 more

High-level Colonization With Antibiotic-Resistant Enterobacterales Among Individuals in a Semi-Urban Setting in South India: An Antibiotic Resistance in Communities and Hospitals (ARCH) Study

Clinical Infectious Diseases(2023)10.1093/cid/ciad220

N/A

0DataRank · unranked

10 citations

Tarun Bhatnagar, G Sathya Narayanan, S. Swathi, V. Sindhuja, Valan Siromany +36 more

Mycobacterium tuberculosis epidemiology in Oman: whole-genome sequencing uncovers transmission pathways

Microbiology Spectrum(2023)10.1128/spectrum.02420-23

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0DataRank · unranked

7 citations

Amina Al‐Jardani, Saleh Al-Azri, Robert A. Petit, Eltaib Saad, Sarah Al-Mahrouqi +10 more

Association between minimum inhibitory concentration values and mortality risk in patients with Stenotrophomonas maltophilia infections: a retrospective cohort study of electronic health records from 148 US hospitals

JAC-Antimicrobial Resistance(2023)10.1093/jacamr/dlad049

N/A

0DataRank · unranked

6 citations

Alexander Lawandi, Sarah Warner, Cumhur Y. Demirkale, Jeffrey R. Strich, John P. Dekker +4 more

Priorities and Progress in Gram-positive Bacterial Infection Research by the Antibacterial Resistance Leadership Group: A Narrative Review

Clinical Infectious Diseases(2023)10.1093/cid/ciad565

N/A

0DataRank · unranked

6 citations

César A. Arias, Deena R. Altman, Ahmed Babiker, Helen W. Boucher, C. Buddy Creech +40 more

The authors reply:

Critical Care Medicine(2023)10.1097/ccm.0000000000006080

N/A

0DataRank · unranked

0 citations

Marissa Oshiro, Sarah Warner, Guoqing Diao, Jeffrey R. Strich, Ahmed Babiker +5 more

Rates of resistance and heteroresistance to newer β-lactam/β-lactamase inhibitors for carbapenem-resistant Enterobacterales

JAC-Antimicrobial Resistance(2024)10.1093/jacamr/dlae048

N/A

0DataRank · unranked

13 citations

Alex Page, Sarah Lohsen, Ali Haider, Jesse J. Waggoner, Gillian Smith +5 more

Heteroresistance to piperacillin/tazobactam in Klebsiella pneumoniae is mediated by increased copy number of multiple β-lactamase genes

JAC-Antimicrobial Resistance(2024)10.1093/jacamr/dlae057

N/A

0DataRank · unranked

10 citations

Sarah Lohsen, Julia Van Riel, Karin Hjort, David S. Weiss, Dan I. Andersson +2 more

Carbapenem use in extended-spectrum cephalosporin-resistant Enterobacterales infections in US hospitals and influence of IDSA guidance: a retrospective cohort study

The Lancet Infectious Diseases(2024)10.1016/s1473-3099(24)00149-x

N/A

0DataRank · unranked

8 citations

Guoqing Diao, Sarah Warner, Ahmed Babiker, Maniraj Neupane, Jeffrey R. Strich +3 more

The Burden and Impact of Early Post-transplant Multidrug-Resistant Organism Detection Among Renal Transplant Recipients, 2005–2021

Open Forum Infectious Diseases(2024)10.1093/ofid/ofae060

N/A

0DataRank · unranked

6 citations

Geeta Karadkhele, Andrei Bombin, Rockford Watkins, Chad Robichaux, Gillian Smith +10 more

Associations between neighbourhood-level median household income and outpatients’ risk of antibiotic non-susceptible uropathogens in a major urban centre, USA

JAC-Antimicrobial Resistance(2024)10.1093/jacamr/dlae179

N/A

0DataRank · unranked

1 citations

Ahmed Babiker, Sarah W. Satola, Latania K. Logan, Maya Nadimpalli, Chanda M L Mwansa

Inappropriate empirical antibiotic therapy for bloodstream infections based on discordant in-vitro susceptibilities: a retrospective cohort analysis of prevalence, predictors, and mortality risk in US hospitals

The Lancet Infectious Diseases(2020)10.1016/s1473-3099(20)30477-1

N/A

0DataRank · unranked

272 citations

Yi Ling Lai, Sarah Warner, Jeffrey R. Strich, Ahmed Babiker, Emily Ricotta +11 more

Viral and host factors associated with SARS-CoV-2 disease severity in Georgia, USA

PLoS ONE(2025)10.1371/journal.pone.0317972

N/A

0DataRank · unranked

0 citations

Allison Dorothy Roebling, Dara Khosravi, Rose M. Langsjoen, Andrei Bombin, Bri Bixler +23 more

Effectiveness of adjunctive clindamycin in β-lactam antibiotic-treated patients with invasive β-haemolytic streptococcal infections in US hospitals: a retrospective multicentre cohort study

The Lancet Infectious Diseases(2020)10.1016/s1473-3099(20)30523-5

N/A

0DataRank · unranked

124 citations

Xiaobai Li, Yi Ling Lai, Jeffrey R. Strich, Sarah Warner, Sadia Sarzynski +4 more

Changing Epidemiology and Decreased Mortality Associated With Carbapenem-resistant Gram-negative Bacteria, 2000–2017

Clinical Infectious Diseases(2020)10.1093/cid/ciaa1464

N/A

0DataRank · unranked

67 citations

Lloyd Clarke, Melissa Saul, Julie Gealey, Cornelius J. Clancy, M. Hong Nguyen +2 more

Bioaerosol sampling of a ventilated patient with COVID-19

American Journal of Infection Control(2020)10.1016/j.ajic.2020.07.033

N/A

0DataRank · unranked

30 citations

Erik A. Brownsword, Jill S. Morgan, Ahmed Babiker, Sharon Vanairsdale, G. Marshall Lyon +5 more

Metagenomic Sequencing To Detect Respiratory Viruses in Persons under Investigation for COVID-19

Journal of Clinical Microbiology(2020)10.1128/jcm.02142-20

N/A

0DataRank · unranked

55 citations

Heath L. Bradley, Victoria Stittleburg, Jessica Ingersoll, Autum Key, Colleen S. Kraft +3 more

Clinical and Genomic Epidemiology of Carbapenem-Nonsusceptible Citrobacter spp. at a Tertiary Health Care Center over 2 Decades

Journal of Clinical Microbiology(2020)10.1128/jcm.00275-20

N/A

0DataRank · unranked

34 citations

Daniel R. Evans, M. Patrick Griffith, Christi L. McElheny, Mohamed Hassan, Lloyd Clarke +6 more

Bioaerosol Sampling for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in a Referral Center with Critically Ill Coronavirus Disease 2019 (COVID-19) Patients March–May 2020

Clinical Infectious Diseases(2020)10.1093/cid/ciaa1880

N/A

0DataRank · unranked

27 citations

Erik A. Brownsword, Ahmed Babiker, Jessica Ingersoll, Jesse J. Waggoner, Marie Ayers +5 more

Metagenomic sequencing to detect respiratory viruses in persons under investigation for COVID-19

medRxiv(2020)10.1101/2020.09.09.20178764

N/A

0DataRank · unranked

7 citations

Heath L. Bradley, Victoria Stittleburg, Autum Key, Colleen S. Kraft, Jesse J. Waggoner +2 more

Population-Level Burden of Delayed or In Vitro Discordant Empiric Antibiotics Among Bacteremic Patients at US Hospitals

Infection Control and Hospital Epidemiology(2020)10.1017/ice.2020.526

N/A

0DataRank · unranked

0 citations

Yi Ling Lai, Sarah Warner, Jeffrey R. Strich, Ahmed Babiker, Emily Ricotta +9 more