Anthony T. Bogetti

Also affiliated with Stony Brook School, Stony Brook University

Biochemistry, Genetics and Molecular BiologyMedicineEngineeringPhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 22 papers. Top paper: “A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0]”.

A Suite of Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v2.0]

Living Journal of Computational Molecular Science(2023)10.33011/livecoms.5.1.1655

N/A

0.664DataRank · unranked

15 citations

Jeremy M. G. Leung, John D. Russo, She Zhang, Jeffrey P. Thompson, Ali Sinan Saglam +17 more

#COVIDisAirborne: AI-Enabled Multiscale Computational Microscopy of Delta SARS-CoV-2 in a Respiratory Aerosol

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.12.468428

N/A

0.505DataRank · unranked

28 citations

Lorenzo Casalino, Fiona L. Kearns, Mia A. Rosenfeld, Nicholas Wauer, Surl-Hee Ahn +47 more

LPATH: A Semiautomated Python Tool for Clustering Molecular Pathways

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c01318

N/A

0.442DataRank · unranked

18 citations

Jeremy M. G. Leung, Lillian T. Chong, Anthony T. Bogetti

InSty: A ProDy Module for Evaluating Protein Interactions and Stability

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169009

N/A

0.269DataRank · unranked

5 citations

James Krieger, Anupam Banerjee, Xin Cao, Gary D. Wu, Anthony T. Bogetti +5 more

WESTPA 2.0: High-performance upgrades for weighted ensemble simulations and analysis of longer-timescale applications

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.05.471280

N/A

0.104DataRank · unranked

1 citations

She Zhang, Jeremy M. G. Leung, Anthony T. Bogetti, Jeffrey P. Thompson, Alex J. DeGrave +11 more

Mechanistic Insights into Passive Membrane Permeability of Drug-Like Molecules from a Weighted Ensemble of Trajectories

ChemRxiv(2021)10.26434/chemrxiv-2021-mmv2k

N/A

0DataRank · unranked

2 citations

Jeffrey P. Thompson, Junchao Xia, Anthony T. Bogetti, Forrest York, Geoffrey Skillman +3 more

#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol

The International Journal of High Performance Computing Applications(2022)10.1177/10943420221128233

N/A

0DataRank · unranked

98 citations

Lorenzo Casalino, Fiona L. Kearns, Mia A. Rosenfeld, Nicholas Wauer, Surl-Hee Ahn +47 more

A Suite of Advanced Tutorials for the WESTPA 2.0 Rare-Events Sampling Software [Article v0.1]

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.04.510803

N/A

0DataRank · unranked

4 citations

Jeremy M. G. Leung, John D. Russo, She Zhang, Jeffrey P. Thompson, Ali Sinan Saglam +10 more

LPATH: A semi-automated Python tool for clustering molecular pathways

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.17.553774

N/A

0DataRank · unranked

3 citations

Jeremy M. G. Leung, Lillian T. Chong, Anthony T. Bogetti

Revisiting the classic azide-clock reaction: Direct simulation of pathways reveals a rate-limiting activation step

ChemRxiv(2023)10.26434/chemrxiv-2023-h3c60

N/A

0DataRank · unranked

0 citations

Matthew C. Zwier, Lillian T. Chong, Anthony T. Bogetti

Revisiting the classic azide-clock reaction: Direct simulation of pathways reveals a rate-limiting activation step

ChemRxiv(2023)10.26434/chemrxiv-2023-h3c60-v2

N/A

0DataRank · unranked

0 citations

Matthew C. Zwier, Lillian T. Chong, Anthony T. Bogetti

WatFinder: a ProDy tool for protein–water interactions

Bioinformatics(2024)10.1093/bioinformatics/btae516

N/A

0DataRank · unranked

6 citations

Frane Doljanin, Anthony T. Bogetti, Feng Zhang, Thiliban Manivarma, İvet Bahar +2 more

Revisiting textbook azide-clock reactions: A “propeller-crawling” mechanism explains differences in rates

ChemRxiv(2024)10.26434/chemrxiv-2023-h3c60-v3

N/A

0DataRank · unranked

1 citations

Matthew C. Zwier, Lillian T. Chong, Anthony T. Bogetti

Revisiting textbook azide-clock reactions: A “propeller-crawling” mechanism explains differences in rates

ChemRxiv(2024)10.26434/chemrxiv-2023-h3c60-v4

N/A

0DataRank · unranked

1 citations

Matthew C. Zwier, Lillian T. Chong, Anthony T. Bogetti

Revisiting textbook azide-clock reactions: A “propeller-crawling” mechanism explains differences in rates

ChemRxiv(2024)10.26434/chemrxiv-2023-h3c60-v5

N/A

0DataRank · unranked

0 citations

Matthew C. Zwier, Lillian T. Chong, Anthony T. Bogetti

Lessons Learned from a Ligand-Unbinding Stress Test for Weighted Ensemble Simulations

ACS Omega(2025)10.1021/acsomega.5c03809

N/A

0DataRank · unranked

5 citations

Darian T. Yang, Hannah E. Piston, David N. LeBard, Lillian T. Chong, Anthony T. Bogetti

A twist in the road less traveled: The AMBER ff15ipq-m force field for protein mimetics

The Journal of Chemical Physics(2020)10.1063/5.0019054

N/A

0DataRank · unranked

21 citations

Hannah E. Piston, Jeremy M. G. Leung, Chino C. Cabalteja, Darian T. Yang, Alex J. DeGrave +6 more

Lessons Learned from a Ligand-Unbinding Stress Test for Weighted Ensemble Simulations

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.23.650329

N/A

0DataRank · unranked

0 citations

Darian T. Yang, Hannah E. Piston, David N. LeBard, Lillian T. Chong, Anthony T. Bogetti

AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.19.390187

N/A

0DataRank · unranked

46 citations

Abigail C. Dommer, Zied Gaieb, Emília P. Barros, Terra Sztain, Surl-Hee Ahn +23 more

A Minimal, Adaptive Binning Scheme for Weighted Ensemble Simulations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.05.369744

N/A

0DataRank · unranked

2 citations

Anthony T. Bogetti, Lillian T. Chong, Paul A. Torrillo

A glycan gate controls opening of the SARS-CoV-2 spike protein

Nature Chemistry(2021)10.1038/s41557-021-00758-3

N/A

0DataRank · unranked

411 citations

Surl-Hee Ahn, Anthony T. Bogetti, Lorenzo Casalino, Jory A. Goldsmith, E. Seitz +12 more

A glycan gate controls opening of the SARS-CoV-2 spike protein

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.15.431212

N/A

0DataRank · unranked

70 citations

Surl-Hee Ahn, Anthony T. Bogetti, Lorenzo Casalino, Jory A. Goldsmith, E. Seitz +12 more