🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

James Borneman

University of California, Riverside

ORCID: 0000-0003-0661-4970

Also affiliated with Planta

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 11 papers. Top paper: “High Levels of Oxidative Stress Create a Microenvironment That Significantly Decreases the Diversity of the Microbiota in Diabetic Chronic Wounds and Promotes Biofilm Formation”.

High Levels of Oxidative Stress Create a Microenvironment That Significantly Decreases the Diversity of the Microbiota in Diabetic Chronic Wounds and Promotes Biofilm Formation

Frontiers in Cellular and Infection Microbiology(2020)10.3389/fcimb.2020.00259

N/A

2.0DataRank · unranked

71 citations

Paul R. Ruegger, Elyson Gavin Lebig, Samantha VanSchalkwyk, Daniel R. Jeske, Ansel Hsiao +3 more

An In Vitro Pipeline for Screening and Selection of Citrus-Associated Microbiota with Potential Anti-“ Candidatus Liberibacter asiaticus” Properties

Applied and Environmental Microbiology(2020)10.1128/aem.02883-19

N/A

0.581DataRank · unranked

47 citations

Nichole Ginnan, Tyler Dang, Sohrab Bodaghi, Georgios Vidalakis, Paul Ruegger +15 more

Autoimmune susceptibility gene PTPN2 is required for clearance of adherent-invasive Escherichia coli by integrating bacterial uptake and lysosomal defence

Gut(2021)10.1136/gutjnl-2020-323636

N/A

0.489DataRank · unranked

25 citations

Ali Shawki, Pritha Chatterjee, Vinicius Canale, Alina N. Santos, Anica Sayoc-Becerra +5 more

Intestinal epithelial PTPN2 limits pathobiont colonization by immune-directed antimicrobial responses

Gut Microbes(2025)10.1080/19490976.2025.2559029

N/A

0.104DataRank · unranked

1 citations

Marianne R. Spalinger, Charly Acevedo, Alina N. Santos, Casey M. Gries, Salomon Manz +9 more

Diet High in Soybean Oil Increases Susceptibility to Colitis in Mice

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.08.430328

N/A

0DataRank · unranked

2 citations

Paul Ruegger, Geoffrey D. Logan, Ali Shawki, Jiang Li, Jonathan Mitchell +11 more

Crohn’s disease in endoscopic remission, obesity, and cases of high genetic risk demonstrate overlapping shifts in the colonic mucosal-luminal interface microbiome

Genome Medicine(2022)10.1186/s13073-022-01099-7

N/A

0DataRank · unranked

31 citations

Maryam Goudarzi, Venu Lagishetty, Dalin Li, Tytus D. Mak, Maomeng Tong +14 more

Impact of various high fat diets on gene expression and the microbiome across the mouse intestines

Scientific Reports(2023)10.1038/s41598-023-49555-7

N/A

0DataRank · unranked

15 citations

Poonamjot Deol, Jonathan Deans, Tao Jiang, Paul Ruegger, James Borneman +2 more

Impact of Various High Fat Diets on Gene Expression and the Microbiome Across the Mouse Intestines

Research Square(2023)10.21203/rs.3.rs-3401763/v1

N/A

0DataRank · unranked

3 citations

Poonamjot Deol, Jonathan Deans, Tao Jiang, Paul Ruegger, James Borneman +2 more

The JAK inhibitor, Tofacitinib, Corrects the Overexpression of CEACAM6 and Limits Susceptibility to AIEC Caused by Reduced Activity of the IBD Associated Gene, PTPN2

medRxiv(2024)10.1101/2024.09.26.24314341

N/A

0DataRank · unranked

1 citations

Vinicius Canale, Stephanie King, Ali Shawki, Hillmin Lei, M. Haddad +5 more

Intestinal Epithelial PTPN2 Limits Pathobiont Colonization by Immune-Directed Antimicrobial Responses

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.24.614848

N/A

0DataRank · unranked

0 citations

Marianne R. Spalinger, Charly Acevedo, Casey M. Gries, Salomon Manz, Vinicius Canale +9 more

Early-life effects of juvenile Western diet and exercise on adult gut microbiome composition in mice

Journal of Experimental Biology(2021)10.1242/jeb.239699

N/A

0DataRank · unranked

63 citations

Jennifer M. Singleton, Marcell D. Cadney, Paul Ruegger, James Borneman, Theodore Garland +1 more