James M. Berger

Also affiliated with Johns Hopkins Medicine

Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 25 papers. Top paper: “Redefine statistical significance”.

Redefine statistical significance

PsyArXiv (OSF Preprints)(2017)10.31234/osf.io/mky9j

N/A

6.5DataRank · unranked

243 citations

James Berger, Magnus Johannesson, Brian A. Nosek, Eric‐Jan Wagenmakers, Richard Berk +76 more

Modulated control of DNA supercoiling balance by the DNA-wrapping domain of bacterial gyrase

Nucleic Acids Research(2020)10.1093/nar/gkz1230

N/A

0DataRank · unranked

15 citations

Zev Bryant, James M. Berger, Matthew Hobson

A Primase-Induced Conformational Switch Controls the Stability of the Bacterial Replisome

Molecular Cell(2020)10.1016/j.molcel.2020.04.037

N/A

0DataRank · unranked

28 citations

Slobodan Jergic, Jacob S. Lewis, Zhi‐Qiang Xu, Allen T.Y. Lo, Valerie L. O’Shea +4 more

Structural and functional characterization of the Spo11 core complex

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.21.960211

N/A

0DataRank · unranked

11 citations

Sam E. Tischfield, Stephen Pu, Eleni P. Mimitou, Ernesto Arias‐Palomo, James M. Berger +2 more

Trapped Topoisomerase II initiates formation of de novo duplications via the nonhomologous end-joining pathway in yeast

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.03.075358

N/A

0DataRank · unranked

1 citations

Anna Rogojina, Matthew Gilbertson, Yilun Sun, Hannah N. Miles, Samantha Shaltz +5 more

Control of topoisomerase II activity and chemotherapeutic inhibition by TCA cycle metabolites

Cell chemical biology(2021)10.1016/j.chembiol.2021.08.014

N/A

0DataRank · unranked

16 citations

Eric P. Mosher, Young‐Sam Lee, Namandjé N. Bumpus, James M. Berger, Joyce H. Lee

Control of topoisomerase II activity and chemotherapeutic inhibition by TCA cycle metabolites

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.22.427624

N/A

0DataRank · unranked

0 citations

Eric P. Mosher, Young‐Sam Lee, Namandjé N. Bumpus, James M. Berger, Joyce H. Lee

Molecular determinants of phase separation for Drosophila DNA replication licensing factors

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.12.439485

N/A

0DataRank · unranked

0 citations

Jonchee A. Kao, Alvin Huang, James M. Berger, Michael R. Botchan, Matthew W Parker

Convergent evolution in two bacterial replicative helicase loaders

Trends in Biochemical Sciences(2022)10.1016/j.tibs.2022.02.005

N/A

0DataRank · unranked

15 citations

James M. Berger, David Jeruzalmi, Jillian Chase

Etoposide promotes DNA loop trapping and barrier formation by topoisomerase II

Nature Chemical Biology(2023)10.1038/s41589-022-01235-9

N/A

0DataRank · unranked

66 citations

Meiling Wu, Joyce H. Lee, Neti Bhatt, James T. Inman, James M. Berger +2 more

Chromatinization modulates topoisomerase II processivity

Nature Communications(2023)10.1038/s41467-023-42600-z

N/A

0DataRank · unranked

29 citations

Meiling Wu, James T. Inman, Gundeep Singh, Seong Ha Park, Joyce H. Lee +6 more

Using energy to go downhill—a genoprotective role for ATPase activity in DNA topoisomerase II

Nucleic Acids Research(2023)10.1093/nar/gkad1157

N/A

0DataRank · unranked

13 citations

Tim R. Blower, Karin C. Nitiss, Viraj Shah, John L. Nitiss, James M. Berger +1 more

Naturally mutagenic sequence diversity in a human type II topoisomerase

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2302064120

N/A

0DataRank · unranked

11 citations

Tim R. Blower, Karin C. Nitiss, Raveena Gupta, Albert Y. Lau, R. Guha +3 more

Single-molecule dynamics of DNA gyrase in evolutionarily distant bacteria Mycobacterium tuberculosis and Escherichia coli

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.103003

N/A

0DataRank · unranked

7 citations

Matthew Hobson, Jonathan X. Meng, Athena Ierokomos, Ivan E. Ivanov, James M. Berger +2 more

Using energy to go downhill – a genoprotective role for ATPase activity in DNA topoisomerase II

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.27.546777

N/A

0DataRank · unranked

2 citations

Tim R. Blower, Karin C. Nitiss, Viraj Shah, John L. Nitiss, James M. Berger +1 more

Chromatinization Modulates Topoisomerase II Processivity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.03.560726

N/A

0DataRank · unranked

1 citations

Meiling Wu, James T. Inman, Gundeep Singh, Seong ha Park, Joyce H. Lee +6 more

Dimensional Reduction for Single Molecule Imaging of DNA and Nucleosome Condensation by Polyamines, HP1α and Ki-67

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.04.522433

N/A

0DataRank · unranked

0 citations

Jacob Kæstel‐Hansen, Fahad Rashid, Sangwoo Park, Raquel Merino Urteaga, Ting‐Wei Liao +5 more

Total Synthesis and Structural Reassignment of the Antitubercular Natural Product Evybactin

Chemistry - A European Journal(2024)10.1002/chem.202403767

N/A

0DataRank · unranked

5 citations

Sangkeun Son, Monique Theriault, Cornelis J. Slingerland, Glenn Hauk, Laurence Cleenewerk +5 more

Human Topoisomerase IIα Promotes Chromatin Condensation Via a Phase Transition

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.15.618281

N/A

0DataRank · unranked

11 citations

Curtis Beck, Joyce H. Lee, Robert M. Fulbright, Joshua Jeong, James T. Inman +4 more

Chromatin Buffers Torsional Stress During Transcription

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.15.618270

N/A

0DataRank · unranked

5 citations

Lucyna Lubkowska, Shuming Zhang, Chuang Tan, Yifeng Hong, Robert K. Fulbright +8 more

A high throughput single molecule platform to study DNA supercoiling effect on protein-DNA interactions

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.24.620099

N/A

0DataRank · unranked

1 citations

Jihee Hwang, Fahad Rashid, James A. London, Richard Fishel, James M. Berger +3 more

A high-throughput single-molecule platform to study DNA supercoiling effect on protein–DNA interactions

Nucleic Acids Research(2025)10.1093/nar/gkaf581

N/A

0DataRank · unranked

6 citations

Fahad Rashid, Jihee Hwang, James A. London, Richard Fishel, James M. Berger +3 more

Torsion is a dynamic regulator of DNA replication stalling and reactivation

Nature Communications(2025)10.1038/s41467-025-65567-5

N/A

0DataRank · unranked

2 citations

Xiang Gao, Shuming Zhang, James T. Inman, Yifeng Hong, Anupam Singh +5 more

Chromatin buffers torsional stress during transcription

Science(2025)10.1126/science.adv0134

N/A

0DataRank · unranked

2 citations

Lucyna Lubkowska, Shuming Zhang, Chuang Tan, Yifeng Hong, Xiaomeng Jia +10 more

Mechanistic insights into direct DNA and RNA strand transfer and dynamic protein exchange of SSB and RPA

Nucleic Acids Research(2025)10.1093/nar/gkaf642

N/A

0DataRank · unranked

3 citations

I‐Ren Lee, Sushil Pangeni, Fahad Rashid, Olivia Yang, Edwin Antony +4 more