Hashim M. Al‐Hashimi

Columbia University Irving Medical Center

Also affiliated with Columbia University

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 42 papers. Top paper: “DNA mismatches reveal conformational penalties in protein–DNA recognition”.

DNA mismatches reveal conformational penalties in protein–DNA recognition

Nature(2020)10.1038/s41586-020-2843-2

N/A

0.753DataRank · unranked

150 citations

Honglue Shi, Atul Rangadurai, Harshit Sahay, Alon Senitzki, Suela Xhani +10 more

Measuring thermodynamic preferences to form non-native conformations in nucleic acids using ultraviolet melting

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2112496119

N/A

0.661DataRank · unranked

20 citations

Honglue Shi, Yu Xu, Bei Liu, Hala Abou Assi, John D. Boom +4 more

Revealing A-T and G-C Hoogsteen base pairs in stressed protein-bound duplex DNA

Nucleic Acids Research(2021)10.1093/nar/gkab936

N/A

0.500DataRank · unranked

27 citations

Isaac J. Kimsey, Stephanie Gu, Hsuan-Fu Liu, Uyen Pham, Maria A. Schumacher +2 more

Rapid measurement of Watson-Crick to Hoogsteen exchange in unlabeled DNA duplexes using high-power SELOPE imino 1 H CEST

(2021)10.5194/mr-2021-58

N/A

0.165DataRank · unranked

2 citations

Atul Rangadurai, Honglue Shi, Hashim M. Al‐Hashimi, Bei Liu

Revealing hidden protonated conformational states in RNA dynamic ensembles

Nucleic Acids Research(2025)10.1093/nar/gkaf1366

N/A

0.165DataRank · unranked

2 citations

Rohit Roy, Laura R. Ganser, Linshu Li, Hashim M. Al‐Hashimi, Ainan Geng

Anomalous reverse transcription through chemical modifications in polyadenosine stretches

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.07.897843

N/A

0.165DataRank · unranked

2 citations

Ved V. Topkar, Bei Liu, Tracy L. Hodges, Sarah C. Keane, Hashim M. Al‐Hashimi +2 more

Direct Measurement of 8OG syn-anti Flips in Mutagenic 8OG•A and Long-Range Damage-Dependent Hoogsteen Breathing Dynamics Using 1 H CEST NMR

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.15.575532

N/A

0.165DataRank · unranked

2 citations

Hashim M. Al‐Hashimi, Stephanie Gu

Revealing the high propensity of RNAs to non-specifically bind drug-like small molecules

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.02.074336

N/A

0DataRank · unranked

0 citations

Chia-Chieh Chu, Honglue Shi, Laura R. Ganser, Hal P. Bogerd, Kelly Huynh +4 more

Slowdown of Interhelical Motions Induces a Glass Transition in RNA

UNC Libraries(2020)10.17615/tw9y-s348

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0DataRank · unranked

0 citations

Ioan Andricioaei, Hashim M. Al‐Hashimi, Aaron T. Frank, Qi Zhang

Invisible RNA state dynamically couples distant motifs

UNC Libraries(2020)10.17615/zb34-n979

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0DataRank · unranked

0 citations

Elizabeth A. Dethoff, Jang Hyun Lee, Hashim M. Al‐Hashimi

Dynamic Motions of the HIV-1 Frameshift Site RNA

UNC Libraries(2020)10.17615/h77c-dw86

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0DataRank · unranked

0 citations

Marco Tonelli, Hashim M. Al‐Hashimi, Elizabeth A. Dethoff, Samuel E. Butcher, Kathryn D. Mouzakis

Engineering a Therapeutic Lectin by Uncoupling Mitogenicity from Antiviral Activity

UNC Libraries(2020)10.17615/9z66-ta09

N/A

0DataRank · unranked

0 citations

Michael D. Swanson, Hans‐Joachim Gabius, Irwin Goldstein, Donald F. Smee, Dominique Schols +21 more

Secondary structure encodes a cooperative tertiary folding funnel in the Azoarcus ribozyme

UNC Libraries(2020)10.17615/53ac-k047

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0DataRank · unranked

0 citations

Anthony M. Mustoe, Charles L. Brooks, Hashim M. Al‐Hashimi

Developments in solution-state NMR yield broader and deeper views of the dynamic ensembles of nucleic acids

Current Opinion in Structural Biology(2021)10.1016/j.sbi.2021.02.007

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0DataRank · unranked

58 citations

Honglue Shi, Hashim M. Al‐Hashimi, Bei Liu

Rapid assessment of Watson–Crick to Hoogsteen exchange in unlabeled DNA duplexes using high-power SELOPE imino 1 H CEST

Magnetic Resonance(2021)10.5194/mr-2-715-2021

N/A

0DataRank · unranked

15 citations

Atul Rangadurai, Honglue Shi, Hashim M. Al‐Hashimi, Bei Liu

Revealing A-T and G-C Hoogsteen base pairs in stressed protein-bound duplex DNA

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.05.447203

N/A

0DataRank · unranked

9 citations

Issac J. Kimsey, Hsuan-Fu Liu, Uyen Pham, Maria A. Schumacher, Hashim M. Al‐Hashimi +1 more

delta-Melt: Nucleic acid conformational penalties from melting experiments

Research Square(2021)10.21203/rs.3.rs-136535/v1

N/A

0DataRank · unranked

0 citations

Atul Rangadurai, Honglue Shi, Yu Xu, Bei Liu, Hala Abou Assi +3 more

Comment on mr-2021-58

(2021)10.5194/mr-2021-58-rc2

N/A

0DataRank · unranked

0 citations

Atul Rangadurai, Honglue Shi, Hashim M. Al‐Hashimi, Bei Liu

Structural basis for impaired 5′ processing of a mutant tRNA associated with defects in neuronal homeostasis

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2119529119

N/A

0DataRank · unranked

16 citations

Stella M. Lai, Eric S. Szymanski, Mridu Kapur, Edric K. Choi, Hashim M. Al‐Hashimi +3 more

RNA conformational propensities determine cellular activity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.05.519207

N/A

0DataRank · unranked

3 citations

Rohit Roy, Ainan Geng, Laura R. Ganser, Akanksha Manghrani, Bryan R. Cullen +4 more

RNA conformational propensities determine cellular activity

Nature(2023)10.1038/s41586-023-06080-x

N/A

0DataRank · unranked

60 citations

Rohit Roy, Ainan Geng, Laura R. Ganser, Akanksha Manghrani, Bryan R. Cullen +4 more

An RNA excited conformational state at atomic resolution

Nature Communications(2023)10.1038/s41467-023-43673-6

N/A

0DataRank · unranked

19 citations

Laura R. Ganser, Rohit Roy, Honglue Shi, Supriya Pratihar, David A. Case +2 more

Kinetic Resolution of the Atomic 3D Structures Formed by Ground and Excited Conformational States in an RNA Dynamic Ensemble

Journal of the American Chemical Society(2023)10.1021/jacs.3c04614

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0DataRank · unranked

13 citations

Ainan Geng, Honglue Shi, Dawn K. Merriman, Elizabeth A. Dethoff, Loïc Salmon +2 more

Hydrogen bonding in duplex DNA probed by DNP enhanced solid-state NMR N-H bond length measurements

Frontiers in Molecular Biosciences(2023)10.3389/fmolb.2023.1286172

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0DataRank · unranked

13 citations

Justin K. Thomas, Daniel W. Conroy, Yu Xu, Hashim M. Al‐Hashimi, Christopher P. Jaroniec +1 more

mRNA interactions with disordered regions control protein activity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.18.529068

N/A

0DataRank · unranked

21 citations

Supriya Pratihar, Ellen Horste, Sibylle Mitschka, Antonia S. J. S. Mey, Hashim M. Al‐Hashimi +2 more

NMR measurements of transient low-populated tautomeric and anionic Watson-Crick-like G·T/U in RNA:DNA hybrids: Implications for the fidelity of transcription and CRISPR/Cas9 gene editing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.24.554670

N/A

0DataRank · unranked

1 citations

Atul Rangadurai, Stephanie Gu, Akanksha Manghrani, Serafima Guseva, Hashim M. Al‐Hashimi +1 more

NMR measurements of transient low-populated tautomeric and anionic Watson–Crick-like G·T/U in RNA:DNA hybrids: implications for the fidelity of transcription and CRISPR/Cas9 gene editing

Nucleic Acids Research(2024)10.1093/nar/gkae027

N/A

0DataRank · unranked

11 citations

Atul Rangadurai, Stephanie Gu, Akanksha Manghrani, Serafima Guseva, Hashim M. Al‐Hashimi +1 more

Direct Measurement of 8OG Syn-Anti Flips in Mutagenic 8OG·A and Long-Range Damage-Dependent Hoogsteen Breathing Dynamics Using 1H CEST NMR

The Journal of Physical Chemistry B(2024)10.1021/acs.jpcb.4c00316

N/A

0DataRank · unranked

6 citations

Hashim M. Al‐Hashimi, Stephanie Gu

Exploring the energetic and conformational properties of the sequence space connecting naturally occurring RNA tetraloop receptor motifs

RNA(2024)10.1261/rna.080039.124

N/A

0DataRank · unranked

0 citations

Lena M. Cuevas, Rohit Roy, Steve Bonilla, Hashim M. Al‐Hashimi, William J. Greenleaf +2 more

Kinetic Dissection of Proton-Coupled Conformational Transitions in Nucleic Acids by Integrating pH-Dependent NMR and Chemical Modifications

Journal of the American Chemical Society(2025)10.1021/jacs.5c01663

N/A

0DataRank · unranked

8 citations

Rohit Roy, Stephanie Gu, S. Shetty, Atul Rangadurai, Hashim M. Al‐Hashimi +1 more

Quantitative and Systematic NMR Measurements of Sequence-Dependent A–T Hoogsteen Dynamics in the DNA Double Helix

Biochemistry(2025)10.1021/acs.biochem.4c00820

N/A

0DataRank · unranked

6 citations

Atul Rangadurai, Or Szekely, Bei Liu, Serafima Guseva, Hashim M. Al‐Hashimi +1 more

Insight into the Conformational Ensembles Formed by U–U and T–T Mismatches in RNA and DNA Duplexes From a Structure-based Survey, NMR, and Molecular Dynamics Simulations

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169197

N/A

0DataRank · unranked

5 citations

Rohit Roy, Stephanie Gu, Serafima Guseva, Supriya Pratihar, Yeongjoon Lee +5 more

An A‐T Hoogsteen Base Pair in a Naked DNA Hairpin Motif: A Protein‐Recognized Conformation

Angewandte Chemie International Edition(2025)10.1002/anie.202425067

N/A

0DataRank · unranked

1 citations

Or Szekely, Ainan Geng, Kai Smith, Supriya Pratihar, Yeongjoon Lee +5 more

An A‐T Hoogsteen Base Pair in a Naked DNA Hairpin Motif: A Protein‐Recognized Conformation

Angewandte Chemie(2025)10.1002/ange.202425067

N/A

0DataRank · unranked

0 citations

Or Szekely, Ainan Geng, Kai Smith, Supriya Pratihar, Yeongjoon Lee +5 more

Probing rare and short-lived conformational states in nucleic acids using off-resonance carbonyl and guanidino carbon R1ρ relaxation dispersion

Journal of Magnetic Resonance(2025)10.1016/j.jmr.2025.107910

N/A

0DataRank · unranked

0 citations

Yeongjoon Lee, Ainan Geng, Shibani Bhattacharya, Hashim M. Al‐Hashimi, Supriya Pratihar

Assessing the contribution of rare DNA states to cancer mutational signatures using sequence-specific conformational fingerprinting

Research Square(2025)10.21203/rs.3.rs-8012102/v1

N/A

0DataRank · unranked

0 citations

Or Szekely, Yeongjoon Lee, Atul Rangadurai, Serafima Guseva, Joshua Cooksey +5 more

2′-O-Methylation can increase the abundance and lifetime of alternative RNA conformational states

Nucleic Acids Research(2020)10.1093/nar/gkaa928

N/A

0DataRank · unranked

113 citations

Atul Rangadurai, Honglue Shi, Bei Liu, Mary C. Clay, Kevin Erharter +4 more

Probing RNA Conformational Equilibria within the Functional Cellular Context

Cell Reports(2020)10.1016/j.celrep.2020.02.004

N/A

0DataRank · unranked

39 citations

Chia-Chieh Chu, Hal P. Bogerd, Megan L. Kelly, Bryan R. Cullen, Hashim M. Al‐Hashimi +1 more

Understanding the characteristics of nonspecific binding of drug-like compounds to canonical stem–loop RNAs and their implications for functional cellular assays

RNA(2020)10.1261/rna.076257.120

N/A

0DataRank · unranked

35 citations

Chia-Chieh Chu, Honglue Shi, Laura R. Ganser, Hal P. Bogerd, Kelly Huynh +4 more

Probing conformational transitions towards mutagenic Watson–Crick-like G·T mismatches using off-resonance sugar carbon R1ρ relaxation dispersion

Journal of Biomolecular NMR(2020)10.1007/s10858-020-00337-7

N/A

0DataRank · unranked

25 citations

Eric S. Szymanski, Isaac J. Kimsey, Honglue Shi, Hashim M. Al‐Hashimi, Atul Rangadurai

2’- O -methylation alters the RNA secondary structural ensemble

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.121996

N/A

0DataRank · unranked

2 citations

Honglue Shi, Bei Liu, Mary C. Clay, Kevin Erharter, Christopher Kreutz +3 more

Measuring thermodynamic preferences to form non-native conformations in nucleic acids using melting experiments reveals a rich sequence-specific DNA conformational landscape

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.26.424438

N/A

0DataRank · unranked

2 citations

Honglue Shi, Yu Xu, Bei Liu, Hala Abou Assi, John D. Boom +4 more