Francesca Finotello

MedicineBiochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.5Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8

Top 4%

5.4DataRank

Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

Papers

Driven by 26 papers — median percentile 95. Top paper: “The scverse project provides a computational ecosystem for single-cell omics data analysis”.

The scverse project provides a computational ecosystem for single-cell omics data analysis

Nature Biotechnology(2023)10.1038/s41587-023-01733-8

Top 4%

5.4DataRank

Top 4%353 citations

Danila Bredikhin, Lukas Heumos, Giovanni Palla, Gregor Sturm, Adam Gayoso +29 more

Machine learning for perturbational single-cell omics

Cell Systems(2021)10.1016/j.cels.2021.05.016

N/A

3.6DataRank · unranked

136 citations

Mohammad Lotfollahi, Francesca Finotello, Fabian Joachim Theis, Florian Wolf, Yuge Ji

anndata: Access and store annotated data matrices

Journal of Open Source Software(2024)10.21105/joss.04371

Top 7%

3.1DataRank

Top 7%203 citations

Sergei Rybakov, Fabian Joachim Theis, Philipp Angerer, Francesca Finotello, Valeh Valiollah Pour Amiri

Conditional out-of-distribution generation for unpaired data using transfer VAE

Bioinformatics(2020)10.1093/bioinformatics/btaa800

N/A

3.1DataRank · unranked

139 citations

Mohsen Naghipourfar, Fabian Joachim Theis, Francesca Finotello, Florian Wolf, Mohammad Lotfollahi

Graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/208819

N/A

2.5DataRank · unranked

48 citations

Fiona Hamey, Mireya Plass, Jordi Solana, Joakim S. Dahlin, Berthold Göttgens +4 more

Diffusion pseudotime robustly reconstructs lineage branching

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/041384

N/A

2.0DataRank · unranked

55 citations

Maren Büttner, Francesca Finotello, Florian Buettner, Fabian Joachim Theis, Florian Wolf +1 more

Learning interpretable cellular responses to complex perturbations in high-throughput screens

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.14.439903

N/A

1.9DataRank · unranked

52 citations

Anna Klimovskaia Susmelj, Carlo De Donno, Yuge Ji, Ignacio Ibarra Del Río, Francesca Finotello +5 more

Assessment of batch-correction methods for scRNA-seq data with a new test metric

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/200345

N/A

1.6DataRank · unranked

23 citations

Zhichao Miao, Francesca Finotello, Sarah A. Teichmann, Fabian Joachim Theis, Florian Wolf +1 more

Scanpy for analysis of large-scale single-cell gene expression data

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/174029

N/A

1.4DataRank · unranked

21 citations

Philipp Angerer, Fabian Joachim Theis, Francesca Finotello

Learning interpretable latent autoencoder representations with annotations of feature sets

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.02.401182

N/A

1.2DataRank · unranked

24 citations

Mohammad Lotfollahi, Fabian Joachim Theis, Francesca Finotello, Sergei Rybakov

Generalizing RNA velocity to transient cell states through dynamical modeling

Nature Biotechnology(2020)10.1038/s41587-020-0591-3

N/A

1.2DataRank · unranked

3016 citations

Marius Lange, Stefan Peidli, Francesca Finotello, Fabian Joachim Theis, Volker Bergen

PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

Genome Biology(2019)10.1186/s13059-019-1663-x

N/A

1.1DataRank · unranked

1780 citations

Mireya Plass, Jordi Solana, Joakim S. Dahlin, Berthold Göttgens, Nikolaus Rajewsky +4 more

Model-based branching point detection in single-cell data by K-branches clustering

Bioinformatics(2017)10.1093/bioinformatics/btx325

N/A

1.0DataRank · unranked

17 citations

Francesca Finotello, Fabian Joachim Theis, Florian Wolf, Nikolaos K. Chlis

scGen predicts single-cell perturbation responses

Nature Methods(2019)10.1038/s41592-019-0494-8

N/A

0.975DataRank · unranked

666 citations

Francesca Finotello, Fabian Joachim Theis, Mohammad Lotfollahi

A test metric for assessing single-cell RNA-seq batch correction

Nature Methods(2018)10.1038/s41592-018-0254-1

N/A

0.940DataRank · unranked

527 citations

Zhichao Miao, Francesca Finotello, Sarah A. Teichmann, Fabian Joachim Theis, Maren Büttner

Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics

Science(2018)10.1126/science.aaq1723

N/A

0.938DataRank · unranked

518 citations

Jordi Solana, Francesca Finotello, Salah Ayoub, Aristotelis Misios, Petar Glažar +5 more

Reconstructing cell cycle and disease progression using deep learning

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/081364

N/A

0.869DataRank · unranked

21 citations

Niklas D. Köhler, Thomas Blasi, Andrew Filby, Anne E. Carpenter, Paul Rees +4 more

anndata: Annotated data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.16.473007

N/A

0.859DataRank · unranked

306 citations

Sergei Rybakov, Fabian Joachim Theis, Philipp Angerer, Francesca Finotello, Valeh Valiollah Pour Amiri

Reconstructing cell cycle and disease progression using deep learning

Nature Communications(2017)10.1038/s41467-017-00623-3

N/A

0.858DataRank · unranked

304 citations

Niklas D. Köhler, Thomas Blasi, Andrew Filby, Anne E. Carpenter, Paul Rees +3 more

Single cells make big data: New challenges and opportunities in transcriptomics

Current Opinion in Systems Biology(2017)10.1016/j.coisb.2017.07.004

N/A

0.833DataRank · unranked

257 citations

Sophie Tritschler, Francesca Finotello, Fabian Joachim Theis, Lukas M. Simon, Florian Wolf +2 more

Predicting cellular responses to complex perturbations in high‐throughput screens

Molecular Systems Biology(2023)10.15252/msb.202211517

N/A

0.832DataRank · unranked

256 citations

Anna Klimovskaia Susmelj, Carlo De Donno, Leon Hetzel, Yuge Ji, Ignacio Ibarra Del Río +16 more

Generative modeling and latent space arithmetics predict single-cell perturbation response across cell types, studies and species

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/478503

N/A

0.396DataRank · unranked

13 citations

Francesca Finotello, Fabian Joachim Theis, Mohammad Lotfollahi, Florian Wolf

Model-based branching point detection in single-cell data by K-Branches clustering

bioRxiv (Cold Spring Harbor Laboratory)(2016)10.1101/094532

N/A

0.165DataRank · unranked

2 citations

Francesca Finotello, Fabian Joachim Theis, Florian Wolf, Nikolaos K. Chlis

Neoantigen prediction and computational perspectives towards clinical benefit: recommendations from the ESMO Precision Medicine Working Group

Annals of Oncology(2020)10.1016/j.annonc.2020.05.008

N/A

0DataRank · unranked

157 citations

Miguél Vázquez, Francesca Finotello, Rosalba Lepore, E. Porta, Jasreet Hundal +10 more

Inferring causal molecular networks: empirical assessment through a community-based effort

UNC Libraries(2020)10.17615/j5nb-5n89

N/A

0DataRank · unranked

0 citations

Steven M. Hill, Daoud Meerzaman, Venkateshan Kannan, Bahman Afsari, Takeshi Hase +95 more

A Community Challenge to Predict Clinical Outcomes After Immune Checkpoint Blockade in Non-Small Cell Lung Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.05.518667

N/A

0DataRank · unranked

6 citations

Óscar Lapuente-Santana, Anni S. Halkola, Wenyu Wang, Raghvendra Mall, Xu Xiao +40 more

Francesca Finotello

Indexed papers

Top data-sharing exemplar

Papers