Se Jin Song

Biochemistry, Genetics and Molecular BiologyMedicineEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

9.0Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Greengenes2 unifies microbial data in a single reference tree

Nature Biotechnology(2023)10.1038/s41587-023-01845-1

Top 5%

4.4DataRank

Top 5%629 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Papers

Driven by 23 papers — median percentile 93. Top paper: “Greengenes2 unifies microbial data in a single reference tree”.

Greengenes2 unifies microbial data in a single reference tree

Nature Biotechnology(2023)10.1038/s41587-023-01845-1

Top 5%

4.4DataRank

Top 5%629 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Nature Microbiology(2022)10.1038/s41564-022-01266-x

Top 7%

3.0DataRank

Top 7%191 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +89 more

Greengenes2 enables a shared data universe for microbiome studies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.19.520774

Top 13%

1.6DataRank

Top 13%44 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Evaluation of the Effect of Storage Methods on Fecal, Saliva, and Skin Microbiome Composition

mSystems(2021)10.1128/msystems.01329-20

N/A

0.661DataRank · unranked

81 citations

Kellen Cavagnero, Se Jin Song, Daniel McDonald, Stephen Wandro, Greg Humphrey +5 more

Robustness of cancer microbiome signals over a broad range of methodological variation

Oncogene(2024)10.1038/s41388-024-02974-w

N/A

0.628DataRank · unranked

65 citations

Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, George I. Austin +16 more

Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.17.238444

N/A

0.546DataRank · unranked

37 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Clarisse Marotz, Se Jin Song +31 more

Author Correction: Greengenes2 unifies microbial data in a single reference tree

Nature Biotechnology(2023)10.1038/s41587-023-02026-w

N/A

0.470DataRank · unranked

22 citations

Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González +20 more

Temporal nutrition analysis associates dietary regularity and quality with gut microbiome diversity: insights from the Food & You digital cohort

Nature Communications(2025)10.1038/s41467-025-63799-z

N/A

0.464DataRank · unranked

17 citations

Daniel McDonald, Alejandra Rios Hernandez, Se Jin Song, Andrew Bartko, Robert J. Knight +2 more

Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References

mSystems(2022)10.1128/msystems.00758-22

N/A

0.457DataRank · unranked

20 citations

Stephen Wandro, Karsten Zengler, Lívia S. Zaramela, Brent Nowinski, Austin D. Swafford +6 more

Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies

mSystems(2024)10.1128/msystems.00985-24

N/A

0.434DataRank · unranked

17 citations

Pedro Belda‐Ferre, Simone Zuffa, Vincent Charron‐Lamoureux, Ipsita Mohanty, Gail Ackermann +13 more

Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.04.446988

N/A

0.330DataRank · unranked

8 citations

Louis‐Félix Nothias, Luke Thompson, Jon G. Sanders, Rodolfo A. Salido, Sneha Couvillion +45 more

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

mBio(2025)10.1128/mbio.04015-24

N/A

0.208DataRank · unranked

3 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia +60 more

Feasibility of Home Collection for Urogenital Microbiome Samples

Urogynecology(2024)10.1097/spv.0000000000001544

N/A

0.208DataRank · unranked

3 citations

Cynthia S. Fok, MacKenzie Bryant, Dulce P. Rodriguez-Ponciano, Melanie Meister, Margaret G. Mueller +14 more

Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes

Microbiology Spectrum(2025)10.1128/spectrum.01912-25

N/A

0.104DataRank · unranked

1 citations

Justin P. Shaffer, Pedro Belda‐Ferre, Ipsita Mohanty, Yuhan Weng, Kalen Cantrell +17 more

Naturalization of the microbiota developmental trajectory of Cesarean-born neonates after vaginal seeding

Med(2021)10.1016/j.medj.2021.05.003

N/A

0DataRank · unranked

93 citations

Jincheng Wang, Cameron Martino, Lingjing Jiang, Wesley K. Thompson, Liat Shenhav +22 more

The impact of breastfeeding on the preterm infant’s microbiome and metabolome: a pilot study

Pediatric Research(2024)10.1038/s41390-024-03440-9

N/A

0DataRank · unranked

11 citations

Shiyu S. Bai-Tong, Sarah M. Allard, Gertrude Ecklu-Mensah, Concepcion Sanchez, Se Jin Song +8 more

Effects of variation in sample storage conditions and swab order on 16S vaginal microbiome analyses

Microbiology Spectrum(2023)10.1128/spectrum.03712-23

N/A

0DataRank · unranked

4 citations

MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M. Tubb +6 more

Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.05.498913

N/A

0DataRank · unranked

0 citations

MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M. Tubb +5 more

Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype

mSystems(2022)10.1128/msystems.00050-22

N/A

0DataRank · unranked

25 citations

Daniel McDonald, Kalen Cantrell, Amanda Hazel Dilmore, Yoshiki Vázquez‐Baeza, Liat Shenhav +7 more

Calculating fast differential genome coverages among metagenomic sources using micov

Communications Biology(2025)10.1038/s42003-025-09007-6

N/A

0DataRank · unranked

5 citations

Caitlin Guccione, Daniel McDonald, Renee Oles, Suzanne Devkota, Evguenia Kopylova +10 more

Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention

Advanced Biology(2022)10.1002/adbi.202101313

N/A

0DataRank · unranked

6 citations

Julia M. Gauglitz, Stephen Wandro, Kelly C. Weldon, Megan M. Doty, Kristina Stillwell +11 more

ChIP provides 10-fold microbial DNA enrichment from tissue while minimizing bias

Molecular Biology Reports(2025)10.1007/s11033-025-10330-8

N/A

0DataRank · unranked

4 citations

Jon G. Sanders, Se Jin Song, Sydney Lavoie, Austin D. Swafford, Caitlin Guccione +6 more

Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses

mSystems(2022)10.1128/msystems.01029-22

N/A

0DataRank · unranked

6 citations

MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M. Tubb +5 more

Se Jin Song

Indexed papers

Top data-sharing exemplar

Papers