🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

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Michael P. Snyder

Michael P. Snyder

Stanford Medicine

ORCID: 0000-0003-0784-7987

Also affiliated with Stanford University

MedicineBiochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

29.1Author DataRank

Indexed papers

20in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 20 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

Papers

Driven by 218 papers — median percentile 80. Top paper: “Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy”.

Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy

Cell(2020)10.1016/j.cell.2020.10.036

N/A

8.1DataRank · unranked

565 citations

Eric J. Jaehnig, Shankha Satpathy, Lili M. Blumenberg, Alla Y. Karpova, Meenakshi Anurag +85 more

Single-cell analyses define a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer

Nature Genetics(2022)10.1038/s41588-022-01088-x

N/A

7.5DataRank · unranked

331 citations

Stephanie Nevins, Derek C. Chen, Roxanne Chiu, Aaron M. Horning, Tuhin K. Guha +13 more

Physiological blood–brain transport is impaired with age by a shift in transcytosis

Nature(2020)10.1038/s41586-020-2453-z

N/A

7.2DataRank · unranked

482 citations

Marc Y. Stevens, Michelle B. Chen, Davis P. Lee, Daniel Stähli, David Gate +23 more

Transcriptome variation in human tissues revealed by long-read sequencing

Nature(2022)10.1038/s41586-022-05035-y

N/A

6.6DataRank · unranked

320 citations

Garrett Garborcauskas, Paul Hoffman, Nava Ehsan, Lihua Jiang, Alper Gokden +19 more

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution

Cell(2020)10.1016/j.cell.2020.03.053

Top 4%

5.6DataRank

Top 4%609 citations

Aviv Regev, Philipp Oberdoerffer, Tal Nawy, Anna Hupalowska, Jennifer E. Rood +92 more

Validation of biomarkers of aging

Nature Medicine(2024)10.1038/s41591-023-02784-9

N/A

5.4DataRank · unranked

316 citations

Chiara Herzog, Jesse R. Poganik, Kejun Ying, Jamie N. Justice, Daniel W. Belsky +24 more

Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks

Journal of the American Medical Informatics Association(2020)10.1093/jamia/ocz230

N/A

4.7DataRank · unranked

123 citations

Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael P. Snyder +2 more

An integrative ENCODE resource for cancer genomics

Nature Communications(2020)10.1038/s41467-020-14743-w

Top 5%

4.1DataRank

Top 5%190 citations

Donghoon Lee, Vineet K. Dhiman, Peng Jiang, Jie Xu, Patrick D. McGillivray +53 more

A high-stringency blueprint of the human proteome

Nature Communications(2020)10.1038/s41467-020-19045-9

Top 6%

3.9DataRank

Top 6%217 citations

Edouard C. Nice, Eric W. Deutsch, Lydie Lane, Gilbert S. Omenn, Stephen R. Pennington +41 more

Temporal dynamics of the multi-omic response to endurance exercise training

Nature(2024)10.1038/s41586-023-06877-w

Top 7%

3.4DataRank

Top 7%248 citations

Primary authors, Lead Analysts, David Amar, Nicole R. Gay, Pierre M. Jean Beltran +95 more

Integrated trajectories of the maternal metabolome, proteome, and immunome predict labor onset

Science Translational Medicine(2021)10.1126/scitranslmed.abd9898

N/A

3.1DataRank · unranked

147 citations

Mohammad Sajjad Ghaemi, Xiaoyuan Han, Kazuo Ando, Julien Hédou, Dorien Feyaerts +33 more

Anticoagulation and Antiplatelet Therapy for Prevention of Venous and Arterial Thrombotic Events in Critically Ill Patients With COVID-19: COVID-PACT

Circulation(2022)10.1161/circulationaha.122.061533

N/A

2.8DataRank · unranked

82 citations

David D. Berg, Mathew S. Lopes, Jean M. Connors, Ijlal Babar, Christopher F. Barnett +94 more

Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease

Cell Host & Microbe(2024)10.1016/j.chom.2024.02.012

N/A

2.5DataRank · unranked

147 citations

Xiaotao Shen, Jethro S. Johnson, Daniel Spakowicz, Melissa Agnello, Wenyu Zhou +33 more

Remodeling of active endothelial enhancers is associated with aberrant gene-regulatory networks in pulmonary arterial hypertension

Nature Communications(2020)10.1038/s41467-020-15463-x

N/A

2.1DataRank · unranked

87 citations

Mingxia Gu, Fabian Grubert, Ivan Berest, Silin Sa, Maya Kasowski +9 more

Deep learning-based detection of COVID-19 using wearables data

medRxiv(2021)10.1101/2021.01.08.21249474

Top 10%

2.1DataRank

Top 10%50 citations

Michael P. Snyder, Gireesh K. Bogu

Leveraging physiology and artificial intelligence to deliver advancements in health care

Physiological Reviews(2023)10.1152/physrev.00033.2022

N/A

1.4DataRank · unranked

35 citations

Zhenqin Wu, Eric Q. Wu, Matthew J. Wu, Michael P. Snyder, James Zou +2 more

Transcriptome variation in human tissues revealed by long-read sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.22.427687

Top 15%

1.4DataRank

Top 15%34 citations

Garrett Garborcauskas, Paul Hoffman, Nava Ehsan, Lihua Jiang, Alper Gokden +19 more

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

Cell(2023)10.1016/j.cell.2023.02.018

Top 15%

1.4DataRank

Top 15%82 citations

Jiahao Gao, Beatrice Borsari, Yucheng T. Yang, Timur R. Galeev, Gamze Gürsoy +95 more

Biomonitoring and precision health in deep space supported by artificial intelligence

Nature Machine Intelligence(2023)10.1038/s42256-023-00617-5

N/A

1.3DataRank · unranked

57 citations

Lauren M. Sanders, Erik L. Antonsen, Jaden J. A. Hastings, Seung Min Park, Graham Mackintosh +51 more

A limited set of transcriptional programs define major cell types

Genome Research(2020)10.1101/gr.263186.120

Top 17%

1.2DataRank

Top 17%38 citations

Manuel Muñoz-Aguirre, Valentin Wucher, Carrie Davis, Diego Garrido-Martín, Sarah Djebali +13 more

Integrated platform for multiscale molecular imaging and phenotyping of the human brain

Science(2024)10.1126/science.adh9979

Top 17%

1.2DataRank

Top 17%52 citations

Ji Wang, Webster Guan, Lars Gjesteby, Dylan Pollack, Lee Kamentsky +24 more

iNetModels 2.0: an interactive visualization and database of multi-omics data

Nucleic Acids Research(2021)10.1093/nar/gkab254

Top 18%

1.2DataRank

Top 18%50 citations

Cheng Zhang, Xiangyü Li, Cem Güngör, Buğra Çakmak, Metin Arslantürk +14 more

Molecular Choreography of Acute Exercise

Cell(2020)10.1016/j.cell.2020.04.043

N/A

0.929DataRank · unranked

488 citations

Si Wu, Kegan Moneghetti, Daniel Hornburg, Sara Ahadi, Ming‐Shian Tsai +27 more

Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures

Cell Genomics(2024)10.1016/j.xgen.2023.100421

N/A

0.928DataRank · unranked

38 citations

Hanna Pinças, Gregory R. Smith, Elena Zaslavsky, Yongchao Ge, Mary Anne S. Amper +75 more

Pre-symptomatic detection of COVID-19 from smartwatch data

Nature Biomedical Engineering(2020)10.1038/s41551-020-00640-6

N/A

0.925DataRank · unranked

476 citations

Meng Wang, Ahmed A. Metwally, Gireesh K. Bogu, Andrew Brooks, Amir Bahmani +16 more

Personal aging markers and ageotypes revealed by deep longitudinal profiling

Nature Medicine(2020)10.1038/s41591-019-0719-5

N/A

0.899DataRank · unranked

399 citations

Wenyu Zhou, Sophia Miryam Schüssler-Fiorenza Rose, M. Reza Sailani, Kévin Contrepois, Monika Avina +4 more

Integrative multi-omic profiling of adult mouse brain endothelial cells and potential implications in Alzheimer’s disease

Cell Reports(2023)10.1016/j.celrep.2023.113392

Top 23%

0.883DataRank

Top 23%33 citations

Yage Nie, Jiawen Yang, Shilun Yang, Rui Li, Varsha Rao +11 more

Stem cell plasticity, acetylation of H3K14, and de novo gene activation rely on KAT7

Cell Reports(2023)10.1016/j.celrep.2022.111980

N/A

0.872DataRank · unranked

33 citations

Maria Bergamasco, Anna Quaglieri, Belinda Phipson, Connie S.N. Li Wai Suen, Ingrid Lönnstedt +12 more

Structured elements drive extensive circular RNA translation

Molecular Cell(2021)10.1016/j.molcel.2021.07.042

N/A

0.869DataRank · unranked

328 citations

Ran Cheng, János Demeter, Jin Chen, Shira Weingarten-Gabbay, Lihua Jiang +6 more

Advancing translational exposomics: bridging genome, exposome and personalized medicine

Human Genomics(2025)10.1186/s40246-025-00761-6

N/A

0.864DataRank · unranked

41 citations

Spyros Karakitsios, Ourania Anesti, Arthur Stem, Damaskini Valvi, Susan Sumner +5 more

Systematic identification of silencers in human cells

Nature Genetics(2020)10.1038/s41588-020-0578-5

N/A

0.798DataRank · unranked

203 citations

Michael P. Snyder, Baoxu Pang

Multi-faceted epigenetic dysregulation of gene expression promotes esophageal squamous cell carcinoma

Nature Communications(2020)10.1038/s41467-020-17227-z

N/A

0.765DataRank · unranked

163 citations

Hayan Lee, Wei Wu, Aubhishek Zaman, S. McCorkle, Ming Yan +25 more

Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

Genome Research(2021)10.1101/gr.265058.120

N/A

0.702DataRank · unranked

107 citations

Benjamin H. Good, Nandita R. Garud, Stephen Martis, Mohan Avula, Wenyu Zhou +7 more

Chromosome-level de novo assembly of the pig-tailed macaque genome using linked-read sequencing and HiC proximity scaffolding

GigaScience(2020)10.1093/gigascience/giaa069

Top 28%

0.702DataRank

Top 28%17 citations

Afshin Babveyh, Lan Huong Nguyen, Wenyu Zhou, Rahul Sinha, Hayan Lee +15 more

Integration of spatial and single-cell data across modalities with weakly linked features

Nature Biotechnology(2023)10.1038/s41587-023-01935-0

N/A

0.698DataRank · unranked

104 citations

Bokai Zhu, Sijia Huang, John W. Hickey, Kevin Lin, Michael P. Snyder +5 more

The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

Genome Biology(2023)10.1186/s13059-023-02915-y

N/A

0.692DataRank · unranked

17 citations

Carles B. Adsera, Jin wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang +46 more

Challenges and recommendations for the translation of biomarkers of aging

Nature Aging(2024)10.1038/s43587-024-00683-3

N/A

0.686DataRank · unranked

96 citations

Ludger J.E. Goeminne, Jesse R. Poganik, Nir Barzilai, Daniel W. Belsky, Joe Betts-LaCroix +29 more

Reduced FOXF1 links unrepaired DNA damage to pulmonary arterial hypertension

Nature Communications(2023)10.1038/s41467-023-43039-y

N/A

0.681DataRank · unranked

25 citations

Ramesh V. Nair, Helen Kang, Lingli Wang, Jan-Renier Moonen, Tsutomu Shinohara +13 more

Multiomic immune clockworks of pregnancy

Seminars in Immunopathology(2020)10.1007/s00281-019-00772-1

N/A

0.666DataRank · unranked

84 citations

Ina A. Stelzer, Amy S. Tsai, Mohammad Sajjad Ghaemi, Xiaoyuan Han, Kazuo Ando +15 more

Serine biosynthesis as a novel therapeutic target for dilated cardiomyopathy

European Heart Journal(2022)10.1093/eurheartj/ehac305

N/A

0.641DataRank · unranked

71 citations

Timon Seeger, Arne A.N. Bruyneel, Vittavat Termglinchan, Emma Monte, Esther W. Lim +17 more

A scalable, secure, and interoperable platform for deep data-driven health management

Nature Communications(2021)10.1038/s41467-021-26040-1

N/A

0.614DataRank · unranked

59 citations

Arash Alavi, Thore Buergel, Sushil Upadhyayula, Qiwen Wang, Srinath Krishna Ananthakrishnan +29 more

Early prediction and longitudinal modeling of preeclampsia from multiomics

Patterns(2022)10.1016/j.patter.2022.100655

N/A

0.612DataRank · unranked

58 citations

Kévin Contrepois, Mira N. Moufarrej, Ina A. Stelzer, Dorien Feyaerts, Xiaoyuan Han +28 more

Multiomic analysis reveals cell-type-specific molecular determinants of COVID-19 severity

Cell Systems(2022)10.1016/j.cels.2022.05.007

N/A

0.546DataRank · unranked

37 citations

Johnathan Cooper‐Knock, Annika K. Weimer, Minyi Shi, Lina Kozhaya, Derya Unutmaz +15 more

Multiomic signals associated with maternal epidemiological factors contributing to preterm birth in low- and middle-income countries

Science Advances(2023)10.1126/sciadv.ade7692

N/A

0.538DataRank · unranked

35 citations

Waqasuddin Khan, Rasheda Khanam, Sayan Das, Javairia Khalid, Jesmin Pervin +52 more

Immunologic effects of forest fire exposure show increases in IL‐1β and CRP

Allergy(2020)10.1111/all.14251

N/A

0.500DataRank · unranked

27 citations

Christopher Dant, Shu Cao, Holden T. Maecker, Francois Haddad, Juyong Brian Kim +4 more

Long-read assays shed new light on the transcriptome complexity of a viral pathogen

Scientific Reports(2020)10.1038/s41598-020-70794-5

N/A

0.500DataRank · unranked

27 citations

István Prazsák, Zsolt Csabai, Norbert Moldován, Béla Dénes, Michael P. Snyder +2 more

Network biology bridges the gaps between quantitative genetics and multi-omics to map complex diseases

Current Opinion in Chemical Biology(2021)10.1016/j.cbpa.2021.102101

N/A

0.489DataRank · unranked

25 citations

Dijun Chen, Michael P. Snyder, Si Wu

Molecular Transducers of Physical Activity Consortium (MoTrPAC): human studies design and protocol

Journal of Applied Physiology(2024)10.1152/japplphysiol.00102.2024

Top 40%

0.483DataRank

Top 40%21 citations

John M. Jakicic, Wendy M. Kohrt, Joseph A. Houmard, Michael E. Miller, Shlomit Radom‐Aizik +89 more

Oxidative stress is a shared characteristic of ME/CFS and Long COVID

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2426564122

N/A

0.477DataRank · unranked

23 citations

Julie Wilhelmy, Ellis J. Curtis, Basil Michael, Layla Cervantes, Vamsee Mallajosyula +9 more

Spatial mapping of protein composition and tissue organization: a primer for multiplexed antibody-based imaging

Nature Methods(2021)10.1038/s41592-021-01316-y

N/A

0.470DataRank · unranked

22 citations

Elizabeth K. Neumann, Andrea J. Radtke, Jeannie M. Camarillo, Rebecca T. Beuschel, Alexandre Albanese +19 more

Temporal changes in soluble angiotensin-converting enzyme 2 associated with metabolic health, body composition, and proteome dynamics during a weight loss diet intervention: a randomized trial with implications for the COVID-19 pandemic

American Journal of Clinical Nutrition(2021)10.1093/ajcn/nqab243

N/A

0.467DataRank · unranked

10 citations

Mary Prunicki, František Sabovčik, Dalia Perelman, Kévin Contrepois, Xiao Li +6 more

Segmentation of human functional tissue units in support of a Human Reference Atlas

Communications Biology(2023)10.1038/s42003-023-04848-5

Top 41%

0.462DataRank

Top 41%14 citations

Leah L. Godwin, Yingnan Ju, Naveksha Sood, Ellen M. Quardokus, Andreas Bueckle +10 more

Global loss of promoter–enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis

Nature Cancer(2024)10.1038/s43018-024-00823-z

N/A

0.457DataRank · unranked

20 citations

Hayan Lee, Shannon White, Annika K. Weimer, Emma Monte, Aaron M. Horning +21 more

In-depth triacylglycerol profiling using MS3 Q-Trap mass spectrometry

Analytica Chimica Acta(2021)10.1016/j.aca.2021.339023

N/A

0.434DataRank · unranked

17 citations

Josefina Priotti, Pablo Domizi, Katharina Papsdorf, Deanna L. Kroetz, Anne Brunet +3 more

Regulation of protein abundance in normal human tissues

medRxiv(2025)10.1101/2025.01.10.25320181

Top 44%

0.427DataRank

Top 44%10 citations

Lihua Jiang, Felipe da Veiga Leprevost, Ruiqi Jian, Joanne Chan, Dafni A. Glinos +6 more

Longitudinal profiling of the microbiome at four body sites reveals core stability and individualized dynamics during health and disease

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.01.577565

N/A

0.419DataRank · unranked

7 citations

Xiaotao Shen, Jethro S. Johnson, Daniel Spakowicz, Melissa Agnello, Wenyu Zhou +33 more

Multiomic analysis of familial adenomatous polyposis reveals molecular pathways associated with early tumorigenesis

Nature Cancer(2024)10.1038/s43018-024-00831-z

N/A

0.416DataRank · unranked

15 citations

Casey Hanson, Si Wu, Aaron M. Horning, Nasim Barapour, Stephanie Nevins +30 more

An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.26.629296

Top 45%

0.416DataRank

Top 45%12 citations

Henry Pratt, Kaili Fan, Nishigandha Phalke, Jonathan Fisher, Shaimae I. Elhajjajy +37 more

Detection and analysis of complex structural variation in human genomes across populations and in brains of donors with psychiatric disorders

Cell(2024)10.1016/j.cell.2024.09.014

N/A

0.399DataRank · unranked

8 citations

Joseph G. Arthur, Hanmin Guo, Taeyoung Kim, Yi‐Ling Huang, Reenal Pattni +32 more

Integrated platform for multi-scale molecular imaging and phenotyping of the human brain

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.13.484171

N/A

0.396DataRank · unranked

13 citations

Ji Wang, Webster Guan, Lars Gjesteby, Dylan Pollack, Lee Kamentsky +24 more

High-resolution lifestyle profiling and metabolic subphenotypes of type 2 diabetes

npj Digital Medicine(2025)10.1038/s41746-025-01728-6

N/A

0.370DataRank · unranked

8 citations

Ahmed A. Metwally, Alireza Delfarah, Yue Wu, Dalia Perelman, Caleb Mayer +7 more

VISTA-induced tumor suppression by a four amino acid intracellular motif

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.05.631401

N/A

0.369DataRank · unranked

7 citations

T Andoh, Fatima Charles, Priyanka Reddy, Kristina Paul, Harsh Goar +22 more

Predicting Type 2 Diabetes Metabolic Phenotypes Using Continuous Glucose Monitoring and a Machine Learning Framework

medRxiv(2024)10.1101/2024.07.20.24310737

N/A

0.360DataRank · unranked

10 citations

Dalia Perelman, Heyjun Park, Yue Wu, Alokkumar Jha, Seth A. Sharp +7 more

Acetyl-Click Screening Platform Identifies Small-Molecule Inhibitors of Histone Acetyltransferase 1 (HAT1)

Journal of Medicinal Chemistry(2023)10.1021/acs.jmedchem.3c00039

N/A

0.360DataRank · unranked

10 citations

Tristan Chou, Benjamin S. Geller, Amithvikram Rangarajan, Tarun A. Swaminathan, D.J. Dixon +9 more

Robust and generalizable segmentation of human functional tissue units

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.09.467810

Top 51%

0.346DataRank

Top 51%4 citations

Yingnan Ju, Naveksha Sood, Yashvardhan Jain, Ellen M. Quardokus, Andreas Bueckle +10 more

Prediction of gestational age using urinary metabolites in term and preterm pregnancies

Scientific Reports(2022)10.1038/s41598-022-11866-6

N/A

0.345DataRank · unranked

9 citations

Songjie Chen, Mohammad Sajjad Ghaemi, Ronald J. Wong, Fyezah Jehan, Sunil Sazawal +45 more

Invigorating discovery and clinical translation of aging biomarkers

Nature Aging(2025)10.1038/s43587-025-00838-w

N/A

0.330DataRank · unranked

6 citations

Chiara Herzog, Kejun Ying, Alan Tomusiak, Jessica Kasamoto, Raghav Sehgal +41 more

Lipidomic profiling reveals age-dependent changes in complex plasma membrane lipids that regulate neural stem cell aging

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.18.503095

N/A

0.330DataRank · unranked

6 citations

Xin Yan, Kévin Contrepois, Francesco Vallania, Mathew Ellenberger, Chloe M. Kashiwagi +11 more

Real-time Alerting System for COVID-19 Using Wearable Data

medRxiv(2021)10.1101/2021.06.13.21258795

N/A

0.330DataRank · unranked

8 citations

Gireesh K. Bogu, Meng Wang, Ekanath Rangan, Andrew Brooks, Qiwen Wang +21 more

Swarm: A federated cloud framework for large-scale variant analysis

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008977

N/A

0.330DataRank · unranked

8 citations

Kyle Ferriter, Vandhana Krishnan, Arash Alavi, Amir Alavi, Philip S. Tsao +3 more

A single-cell, long-read, isoform-resolved case-control study of FTD reveals cell-type-specific and broad splicing dysregulation in human brain

Cell Reports(2025)10.1016/j.celrep.2025.116198

N/A

0.295DataRank · unranked

6 citations

Wen Hu, Li Fan, Anoushka Joglekar, Yi He, Careen Foord +25 more

Low expression of EXOSC2 protects against clinical COVID-19 and impedes SARS-CoV-2 replication

Life Science Alliance(2022)10.26508/lsa.202201449

N/A

0.284DataRank · unranked

4 citations

Valerie Odon, Calum Harvey, Mark O. Collins, Andrew A. Peden, John Franklin +15 more

Antisense oligonucleotide depletion of CCDC146 is a broad-spectrum therapeutic strategy for ALS

medRxiv(2024)10.1101/2024.03.30.24305115

N/A

0.278DataRank · unranked

5 citations

Tobias Moll, Jasper Rubin-Sigler, Sharon Tu, Shuya Li, Enming Yuan +29 more

California Stress, Trauma, and Resilience Study (CalSTARS) protocol: A multiomics-based cross-sectional investigation and randomized controlled trial to elucidate the biology of ACEs and test a precision intervention for reducing stress and enhancing resilience

Stress(2024)10.1080/10253890.2024.2401788

N/A

0.269DataRank · unranked

5 citations

Sophia Miryam Schüssler-Fiorenza Rose, Summer Mengelkoch, Daniel P. Moriarity, Jeffrey Gassen, Jenna C. Alley +24 more

Mutation, selection, and the prevalence of the Caenorhabditis elegans heat-sensitive mortal germline phenotype

G3 Genes Genomes Genetics(2022)10.1093/g3journal/jkac063

N/A

0.269DataRank · unranked

5 citations

Michael P. Snyder, Moein Rajaei, Charles F. Baer, Sayran Saber

Multiomics Longitudinal Modeling of Preeclamptic Pregnancies

Research Square(2021)10.21203/rs.3.rs-138586/v1

N/A

0.269DataRank · unranked

5 citations

Kévin Contrepois, Mira N. Moufarrej, Ina A. Stelzer, Dorien Feyaerts, Xiaoyuan Han +28 more

Wireless closed-loop smart bandage for chronic wound management and accelerated tissue regeneration

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.16.476432

N/A

0.241DataRank · unranked

4 citations

Artem A. Trotsyuk, Simiao Niu, Dominic Henn, Kellen Chen, Chien‐Chung Shih +35 more

Preconception Genetic Carrier Screening for Miscarriage Risk Assessment: A Bioinformatic Approach to Identifying Candidate Lethal Genes and Variants

medRxiv(2023)10.1101/2023.05.25.23290518

N/A

0.208DataRank · unranked

3 citations

Jia-Hua Qu, Shweta Belur, Hakan Çakmak, Eleni A. Greenwood, Ruth B. Lathi +5 more

Identification of end‐stage renal disease metabolic signatures from human perspiration

Natural Sciences(2023)10.1002/ntls.20220048

N/A

0.208DataRank · unranked

3 citations

Basil Michael, Alessandra Celli, Zhenpeng Zhou, Melanie Ashland, Robert Tibshirani +3 more

Evolution of the rate, molecular spectrum, and fitness effects of mutation under minimal selection in Caenorhabditis elegans

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.24.678306

N/A

0.182DataRank · unranked

2 citations

Md. Monjurul Islam Rifat, Fahimeh Rahimi, Michael P. Snyder, Amber Singh, Benjamin Eickwort +9 more

Metabolomic Profiles During and After a Hypertensive Disorder of Pregnancy: The EPOCH Study

International Journal of Molecular Sciences(2025)10.3390/ijms26136150

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0.165DataRank · unranked

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.13.905349

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bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.08.426001

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0.165DataRank · unranked

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medRxiv(2025)10.64898/2025.12.14.25341915

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Cell Reports(2023)10.1016/j.celrep.2023.113466

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The Journal of Immunology(2023)10.4049/jimmunol.2300391

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arXiv (Cornell University)(2023)10.1145/3582515.3609559

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bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.10.523450

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Research Square(2023)10.21203/rs.3.rs-2631220/v2

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PubMed(2023)10.1109/isbi53787.2023.10230780

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Research Square(2023)10.21203/rs.3.rs-3270568/v1

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Nature Aging(2024)10.1038/s43587-024-00692-2

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Nutrients(2024)10.3390/nu16183079

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medRxiv(2024)10.1101/2024.09.05.24312545

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PLoS Genetics(2020)10.1371/journal.pgen.1009010

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medRxiv(2020)10.1101/2020.07.06.20147512

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.16.342857

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.10.195768

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.14.382606

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medRxiv(2020)10.1101/2020.11.24.20238063

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.04.077024

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bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.21.239954

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Nature Methods(2021)10.1038/s41592-021-01197-1

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Circulation(2021)10.1161/circulationaha.121.053575

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Nature Medicine(2021)10.1038/s41591-021-01593-2

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EBioMedicine(2021)10.1016/j.ebiom.2021.103397

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Analytical Chemistry(2021)10.1021/acs.analchem.1c02826

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Nature Communications(2021)10.1038/s41467-021-25872-1

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EMBO Reports(2021)10.15252/embr.202153968

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41 citations

Hou‐Yu Chiang, David Martin, Michael P. Snyder, Julien Sage, Renee A. Reijo Pera +2 more

Master lineage transcription factors anchor trans mega transcriptional complexes at highly accessible enhancer sites to promote long-range chromatin clustering and transcription of distal target genes

Nucleic Acids Research(2021)10.1093/nar/gkab1105

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18 citations

Michael P. Snyder, Chunling Yi, Shannon M. White

Precision medicine in women with epilepsy: The challenge, systematic review, and future direction

Epilepsy & Behavior(2021)10.1016/j.yebeh.2021.107928

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18 citations

Sai Zhang, Michael P. Snyder, Kimford J. Meador, Yi Li

Combined nanopore and single-molecule real-time sequencing survey of human betaherpesvirus 5 transcriptome

Scientific Reports(2021)10.1038/s41598-021-93593-y

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11 citations

Dóra Tombácz, Zsolt Balázs, Norbert Moldován, Zsolt Csabai, Gábor Torma +4 more

AdaTiSS: a novel data-Adaptive robust method for identifyingTissueSpecificityScores

Bioinformatics(2021)10.1093/bioinformatics/btab460

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10 citations

Lihua Jiang, Michael P. Snyder, Meng Wang

Divergent patterns of selection on metabolite levels and gene expression

BMC Ecology and Evolution(2021)10.1186/s12862-021-01915-5

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6 citations

Grace Xiaolu Yang, Neil M. Khosla, Roy Moh Lik Ang, Michael P. Snyder, Hunter B. Fraser +1 more

Five-year pediatric use of a digital wearable fitness device: lessons from a pilot case study

JAMIA Open(2021)10.1093/jamiaopen/ooab054

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5 citations

Amir Bahmani, Atul Janardhan Butte, Xiao Li, Michael P. Snyder, Syzygy Butte

Hummingbird: efficient performance prediction for executing genomic applications in the cloud

Bioinformatics(2021)10.1093/bioinformatics/btab161

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0DataRank · unranked

5 citations

Ziye Xing, Vandhana Krishnan, Utsab Ray, Frank Mueller, Amir Alavi +4 more

Annotation of Spatially Resolved Single-cell Data with STELLAR

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469947

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21 citations

Kaidi Cao, John W. Hickey, Yuqi Tan, Michael P. Snyder, Garry P. Nolan +2 more

High Resolution Single Cell Maps Reveals Distinct Cell Organization and Function Across Different Regions of the Human Intestine

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.25.469203

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17 citations

Winston R. Becker, Stephanie Nevins, Aaron M. Horning, Almudena Espín Pérez, Roxanne Chiu +20 more

Single-cell analyses reveal a continuum of cell state and composition changes in the malignant transformation of polyps to colorectal cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.24.436532

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12 citations

Stephanie Nevins, Derek C. Chen, Roxanne Chiu, Aaron M. Horning, Rozelle Laquindanum +12 more

Precision environmental health monitoring by longitudinal exposome and multi-omics profiling

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.05.442855

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9 citations

Xiaotao Shen, Xinyue Zhang, Chao Jiang, Sai Zhang, Xin Zhou +3 more

Common and rare variant analyses combined with single-cell multiomics reveal cell-type-specific molecular mechanisms of COVID-19 severity

medRxiv(2021)10.1101/2021.06.15.21258703

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7 citations

Johnathan Cooper‐Knock, Annika K. Weimer, Calum Harvey, Thomas Julian, Cheng Wang +18 more

Robust Identification of Temporal Biomarkers in Longitudinal Omics Studies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.19.469350

N/A

0DataRank · unranked

4 citations

Tom Zhang, Si Wu, Ryan Kellogg, Wenyu Zhou, Hua Tang +2 more

A cancer-associated RNA polymerase III identity drives robust transcription and expression of SNAR-A noncoding RNA

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.21.440535

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3 citations

David Marciano, Qing Liu, Andrew M. Lipchik, Sanjay Gollapudi, Benjamin S. Geller +4 more

An acetyl-click screening platform identifies a small molecule inhibitor of Histone Acetyltransferase 1 (HAT1) with anti-tumor activity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.25.449993

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2 citations

Amithvikram Rangarajan, Tristan Chou, Benjamin S. Geller, Selene Banuelos, Robert Greenhouse +3 more

A lipid droplet-peroxisome network drives longevity by monounsaturated fatty acids via modulating ether lipid synthesis and ferroptosis

Research Square(2021)10.21203/rs.3.rs-740521/v1

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2 citations

Katharina Papsdorf, Amir Hosseini, Jason W. Miklas, Matías Cabruja, Yong Yu +8 more

KMT2D-NOTCH Mediates Coronary Abnormalities in Hypoplastic Left Heart Syndrome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.30.457716

N/A

0DataRank · unranked

0 citations

Xin Zhou, Ziyi Liu, Victor Pastrana-Gomez, Yu Liu, Minzhe Guo +12 more

Mutation, selection, and the prevalence of the C. elegans heat-sensitive mortal germline phenotype

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.29.470498

N/A

0DataRank · unranked

0 citations

Michael P. Snyder, Moein Rajaei, Charles F. Baer, Sayran Saber

Phosphorylation of γ-Tubulin Regulates Microtubule Organization in Budding Yeast

UNC Libraries(2021)10.17615/phyb-qy83

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0DataRank · unranked

0 citations

Jacalyn M. Vogel, Jamina Oomen, Dale L. Beach, Kerry Bloom, Michael P. Snyder +1 more

Exerkines in health, resilience and disease

Nature Reviews Endocrinology(2022)10.1038/s41574-022-00641-2

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0DataRank · unranked

877 citations

Robert E. Gerszten, Joan M. Taylor, Bente Klarlund Pedersen, Henriette van Praag, Scott Trappe +20 more

An exercise-inducible metabolite that suppresses feeding and obesity

Nature(2022)10.1038/s41586-022-04828-5

N/A

0DataRank · unranked

324 citations

Yang He, Kévin Contrepois, Hailan Liu, Joon T Kim, Amanda L. Wiggenhorn +24 more

Genome-wide identification of the genetic basis of amyotrophic lateral sclerosis

Neuron(2022)10.1016/j.neuron.2021.12.019

N/A

0DataRank · unranked

124 citations

Johnathan Cooper‐Knock, Annika K. Weimer, Minyi Shi, Tobias Moll, Jack N.G. Marshall +48 more

Global, distinctive, and personal changes in molecular and microbial profiles by specific fibers in humans

Cell Host & Microbe(2022)10.1016/j.chom.2022.03.036

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117 citations

Brittany Lee‐McMullen, Charles W. Abbott, Jeniffer Quijada, Daniel Hornburg, Heyjun Park +14 more

Recurrent repeat expansions in human cancer genomes

Nature(2022)10.1038/s41586-022-05515-1

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0DataRank · unranked

89 citations

Gamze Gürsoy, Rashid Al-Abri, Ashwini Suriyaprakash, Egor Dolzhenko, Kevin Zhu +19 more

TidyMass an object-oriented reproducible analysis framework for LC–MS data

Nature Communications(2022)10.1038/s41467-022-32155-w

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88 citations

Hong Yan, Chuchu Wang, Peng Gao, Caroline H. Johnson, Michael P. Snyder +1 more

KLF4 recruits SWI/SNF to increase chromatin accessibility and reprogram the endothelial enhancer landscape under laminar shear stress

Nature Communications(2022)10.1038/s41467-022-32566-9

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74 citations

James Chappell, Minyi Shi, Tsutomu Shinohara, Dan Li, Maxwell R. Mumbach +12 more

Endogenous Retroviral Elements Generate Pathologic Neutrophils in Pulmonary Arterial Hypertension

American Journal of Respiratory and Critical Care Medicine(2022)10.1164/rccm.202102-0446oc

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0DataRank · unranked

45 citations

Sarasa Isobe, Aiqin Cao, Kévin Contrepois, Bérénice A. Benayoun, Lihua Jiang +25 more

A method for intelligent allocation of diagnostic testing by leveraging data from commercial wearable devices: a case study on COVID-19

npj Digital Medicine(2022)10.1038/s41746-022-00672-z

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0DataRank · unranked

41 citations

Peter Cho, Ali R. Roghanizad, Karnika Singh, Will Wang, Oana M. Enache +19 more

Leveraging Mobile Technology for Public Health Promotion: A Multidisciplinary Perspective

Annual Review of Public Health(2022)10.1146/annurev-publhealth-060220-041643

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36 citations

Melissa A. Boswell, Tim Althoff, Alia J. Crum, Joy P. Ku, James A. Landay +6 more

Performance effectiveness of vital parameter combinations for early warning of sepsis—an exhaustive study using machine learning

JAMIA Open(2022)10.1093/jamiaopen/ooac080

N/A

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25 citations

Rahul Krishnan Pathinarupothi, Kanwaljeet J. S. Anand, Michael P. Snyder, Ekanath Rangan

Robust identification of temporal biomarkers in longitudinal omics studies

Bioinformatics(2022)10.1093/bioinformatics/btac403

N/A

0DataRank · unranked

31 citations

Tom Zhang, Si Wu, Ryan Kellogg, Wenyu Zhou, Kévin Contrepois +3 more

A cancer-associated RNA polymerase III identity drives robust transcription and expression of snaR-A noncoding RNA

Nature Communications(2022)10.1038/s41467-022-30323-6

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0DataRank · unranked

28 citations

David Marciano, Qing Liu, Tristan Chou, Andrew M. Lipchik, Sanjay Gollapudi +5 more

Phenotypic characteristics of peripheral immune cells of Myalgic encephalomyelitis/chronic fatigue syndrome via transmission electron microscopy: A pilot study

PLoS ONE(2022)10.1371/journal.pone.0272703

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21 citations

Rajan Douglas Maynard, Justin Sing, Shaghayegh Jahanbani, John Perrino, Damek V. Spacek +3 more

Unbiased metabolome screen leads to personalized medicine strategy for amyotrophic lateral sclerosis

Brain Communications(2022)10.1093/braincomms/fcac069

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20 citations

Mahjabin Islam, Tobias Moll, Julian Kurz, David Burrows, Alexander McGown +15 more

Whole transcriptome profiling of prospective endomyocardial biopsies reveals prognostic and diagnostic signatures of cardiac allograft rejection

The Journal of Heart and Lung Transplantation(2022)10.1016/j.healun.2022.01.1377

N/A

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18 citations

Alexa K. Dowdell, Mengqi Zhang, Bao‐Li Loza, David O. Walls, Hui Gao +15 more

Chimpanzee and pig-tailed macaque iPSCs: Improved culture and generation of primate cross-species embryos

Cell Reports(2022)10.1016/j.celrep.2022.111264

N/A

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17 citations

Fabian Suchy, Lan Huong Nguyen, Vivek K. Bajpai, Rahul Sinha, José G. Vilches-Moure +16 more

Adverse childhood experiences, diabetes and associated conditions, preventive care practices and health care access: A population-based study

Preventive Medicine(2022)10.1016/j.ypmed.2022.107044

N/A

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13 citations

Michael P. Snyder, George M. Slavich, Sophia Miryam Schüssler-Fiorenza Rose

Systems analysis of de novo mutations in congenital heart diseases identified a protein network in the hypoplastic left heart syndrome

Cell Systems(2022)10.1016/j.cels.2022.09.001

N/A

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12 citations

Xicheng Zhang, Chi Keung Lam, Hongchao Guo, Cheng Wang, Sai Zhang +4 more

Effects of an immersive psychosocial training program on depression and well-being: A randomized clinical trial

Journal of Psychiatric Research(2022)10.1016/j.jpsychires.2022.02.034

N/A

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6 citations

Benjamin Rolnik, Meenakshi Chakraborty, Jacob Wilson, Cyrus Tau, Matthew Sharp +4 more

Exploring disease interrelationships in patients with lymphatic disorders: A single center retrospective experience

Clinical and Translational Medicine(2022)10.1002/ctm2.760

N/A

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20 citations

Xin Zhou, Lan Zhao, Davood K. Hosseini, Xinguo Jiang, Andrew J. Sweatt +5 more

DSIF modulates RNA polymerase II occupancy according to template G + C content

NAR Genomics and Bioinformatics(2022)10.1093/nargab/lqac054

N/A

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5 citations

Yue Zhang, Zhihai Ma, Richard Lin, Tzu‐Hao Cheng, Hua Tang +3 more

Challenging obesity and sex based differences in resting energy expenditure using allometric modeling, a sub-study of the DIETFITS clinical trial

Clinical Nutrition ESPEN(2022)10.1016/j.clnesp.2022.11.015

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6 citations

Xiao Li, Dalia Perelman, Everton J. Santana, Tatiana Kuznetsova, Nicholas Cauwenberghs +6 more

Wnt Signaling Interactor WTIP (Wilms Tumor Interacting Protein) Underlies Novel Mechanism for Cardiac Hypertrophy

Circulation Genomic and Precision Medicine(2022)10.1161/circgen.121.003563

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3 citations

Frederick E. Dewey, Pablo Cordero, Andreas A. Werdich, Anna Kirillova, Yong Huang +23 more

Precision environmental health monitoring by longitudinal exposome and multi-omics profiling

Genome Research(2022)10.1101/gr.276521.121

N/A

0DataRank · unranked

71 citations

Xiaotao Shen, Xinyue Zhang, Chao Jiang, Sai Zhang, Xin Zhou +3 more

PRC2 clock: a universal epigenetic biomarker of aging and rejuvenation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.03.494609

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27 citations

Andrea Cipriano, Daniel Nachun, Tara Murty, Guilherme De Sena Brandine, Sajede Rasouli +11 more

Axon Tracing and Centerline Detection using Topologically-Aware 3D U-Nets

2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC)(2022)10.1109/embc48229.2022.9870879

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7 citations

Lars Gjesteby, Michael P. Snyder, David Chavez, Lee Kamentsky, Kwanghun Chung +2 more

Low expression of EXOSC2 protects against clinical COVID-19 and impedes SARS-CoV-2 replication

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483172

N/A

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2 citations

Valerie Odon, Calum Harvey, Mark O. Collins, Andrew A. Peden, John Franklin +13 more

Post-GWAS multiomic functional investigation of the TNIP1 locus in Alzheimer’s disease implicates mediation through GPX3

medRxiv(2022)10.1101/2022.11.04.22277162

N/A

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2 citations

Lianne M. Reus, Muhammad Ali, Jihua Liu, Yuetiva Deming, Qiongshi Lu +18 more

TidyMass: An Object-oriented Reproducible Analysis Framework for LC-MS Data

Research Square(2022)10.21203/rs.3.rs-1455891/v1

N/A

0DataRank · unranked

1 citations

Xiaotao Shen, Hong Yan, Chuchu Wang, Peng Gao, Caroline H. Johnson +1 more

A genome-wide atlas of recurrent repeat expansions in human cancer

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.24.505159

N/A

0DataRank · unranked

1 citations

Gamze Gürsoy, Rashid Al-Abri, Ashwini Suriyaprakash, Egor Dolzhenko, Kevin Zhu +19 more

Global loss of promoter-enhancer connectivity and rebalancing of gene expression during early colorectal cancer carcinogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.26.505505

N/A

0DataRank · unranked

1 citations

Hayan Lee, Shannon White, Annika K. Weimer, Emma Monte, Aaron Horning +21 more

Global loss of fine-scale chromatin architecture and rebalancing of gene expression during early colorectal cancer development

Research Square(2022)10.21203/rs.3.rs-2003187/v1

N/A

0DataRank · unranked

0 citations

Yizhou Zhu, Hayan Lee, Annika K. Weimer, Aaron M. Horning, Stephanie Nevins +17 more

Multi-Omics Profiling for Health

Molecular & Cellular Proteomics(2023)10.1016/j.mcpro.2023.100561

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373 citations

Michael P. Snyder, Mohan Babu