Yongmei Zhao

Institut thématique Génétique, génomique et bioinformatique

Also affiliated with Frederick National Laboratory for Cancer Research, National Cancer Institute

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

5.9Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing

Nature Biotechnology(2021)10.1038/s41587-021-00993-6

Top 8%

2.7DataRank

Top 8%153 citations

Bin Zhu, Yongmei Zhao, Wanqiu Chen, Zhaowei Yang, Liz Kerrigan +88 more

Papers

Driven by 51 papers — median percentile 83. Top paper: “Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing”.

Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing

Nature Biotechnology(2021)10.1038/s41587-021-00994-5

N/A

3.8DataRank · unranked

215 citations

Luyao Ren, Zhong Chen, Li Tai Fang, Yongmei Zhao, Justin Lack +85 more

Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing

Nature Biotechnology(2021)10.1038/s41587-021-00993-6

Top 8%

2.7DataRank

Top 8%153 citations

Bin Zhu, Yongmei Zhao, Wanqiu Chen, Zhaowei Yang, Liz Kerrigan +88 more

Urine Single-Cell RNA Sequencing in Focal Segmental Glomerulosclerosis Reveals Inflammatory Signatures

Kidney International Reports(2021)10.1016/j.ekir.2021.11.005

N/A

1.8DataRank · unranked

69 citations

Jurgen Heymann, Joseph Jessee, Avi Z. Rosenberg, Céline C. Berthier, Arnon Arazi +20 more

Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study

Scientific Data(2021)10.1038/s41597-021-01077-5

Top 12%

1.7DataRank

Top 12%60 citations

Li Tai Fang, Tsai-Wei Shen, Sulbha Choudhari, Keyur Talsania, Xiongfong Chen +33 more

A multi-center cross-platform single-cell RNA sequencing reference dataset

Scientific Data(2021)10.1038/s41597-021-00809-x

Top 21%

0.957DataRank

Top 21%32 citations

Zhaowei Yang, Wanqiu Chen, Yongmei Zhao, Andrew J. Farmer, Bao Tran +5 more

Whole Genome and Exome Sequencing Reference Datasets from A Multi-center and Cross-platform Benchmark Study

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.27.433136

Top 33%

0.603DataRank

Top 33%10 citations

Li Tai Fang, Tsai-Wei Shen, Sulbha Choudhari, Keyur Talsania, Xiongfong Chen +31 more

Tumor biology and immune infiltration define primary liver cancer subsets linked to overall survival after immunotherapy

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101052

N/A

0.520DataRank · unranked

31 citations

Erica C. Pehrsson, Aiwu Ruth He, Lipika Goyal, Robin Kate Kelley, Hien Dang +26 more

Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

Nature Biotechnology(2025)10.1038/s41587-025-02618-8

N/A

0.505DataRank · unranked

28 citations

Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky +36 more

Pan-viral serology uncovers distinct virome patterns as risk predictors of hepatocellular carcinoma and intrahepatic cholangiocarcinoma

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101328

N/A

0.406DataRank · unranked

14 citations

Limin Wang, Marshonna Forgues, Jinping Liu, Siritida Rabibhadana, Benjarath Pupacdi +20 more

Expression of LIM domain-binding 3 (LDB3), a striated muscle Z-band alternatively spliced PDZ-motif protein in the nervous system

Scientific Reports(2023)10.1038/s41598-023-27531-5

N/A

0.385DataRank · unranked

12 citations

Kalpana Subedi, Maya Silver, Leah Jensen, Stephen Coscia, Malcolm M. Kates +8 more

A germline 1;3 translocation disrupting the VHL gene: a novel genetic cause for von Hippel-Lindau

Journal of Medical Genetics(2020)10.1136/jmedgenet-2020-107308

N/A

0.385DataRank · unranked

12 citations

Cathy D. Vocke, Martin Lang, Xiongfong Chen, Yongmei Zhao, Bao Tran +5 more

NF-κB Signaling Modulates miR-452-5p and miR-335-5p Expression to Functionally Decrease Epithelial Ovarian Cancer Progression in Tumor-Initiating Cells

International Journal of Molecular Sciences(2023)10.3390/ijms24097826

N/A

0.330DataRank · unranked

8 citations

Brittney S. Harrington, Emma Attar, Soumya Korrapati, Jyoti Shetty, Yongmei Zhao +5 more

PKR activation-induced mitochondrial dysfunction in HIV-transgenic mice with nephropathy

eLife(2023)10.7554/elife.91260

N/A

0.259DataRank · unranked

4 citations

Khun Zaw Latt, Avi Z. Rosenberg, Briana A. Santo, Komuraiah Myakala, Yu Ishimoto +12 more

NAD deficiency contributes to progressive kidney disease in HIV-nephropathy mice

American Journal of Physiology-Renal Physiology(2024)10.1152/ajprenal.00061.2024

N/A

0.208DataRank · unranked

3 citations

Komuraiah Myakala, Bryce A. Jones, Xiaoxin X. Wang, Shashi Shrivastav, Briana A. Santo +9 more

Nanoparticles may influence mast cells gene expression profiles without affecting their degranulation function

Nanomedicine Nanotechnology Biology and Medicine(2025)10.1016/j.nano.2025.102818

N/A

0.208DataRank · unranked

3 citations

Edward Cedrone, Jason William Grunberger, Shaojun Xie, Yongmei Zhao, Bao Tran +6 more

Single-cell transcriptional analysis of murine norovirus infection in a human intestinal cell line

Journal of Virology(2024)10.1128/jvi.01617-24

N/A

0.169DataRank · unranked

2 citations

Eric A. Levenson, Natthawan Chaimongkol, L. D. Harris, Yongmei Zhao, Sevilay Turan +7 more

Structure-guided bifunctional molecules hit a DEUBAD-lacking hRpn13 species upregulated in multiple myeloma

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.16.452547

N/A

0.165DataRank · unranked

2 citations

Venkata R. Sabbasani, Vasty Osei-Amponsa, Christine N. Evans, Julianna C. King, Sergey G. Tarasov +15 more

PKR activation-induced mitochondrial dysfunction in HIV-transgenic mice with nephropathy

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.03.510678

N/A

0.104DataRank · unranked

1 citations

Khun Zaw Latt, Avi Z. Rosenberg, Briana A. Santo, Komuraiah Myakala, Yu Ishimoto +12 more

PKR activation-induced mitochondrial dysfunction in HIV-transgenic mice with nephropathy

(2023)10.7554/elife.91260.1

N/A

0DataRank · unranked

1 citations

Khun Zaw Latt, Avi Z. Rosenberg, Briana A. Santo, Komuraiah Myakala, Yu Ishimoto +12 more

HIV viral protein R induces loss of DCT1-type renal tubules

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.02.526686

N/A

0DataRank · unranked

0 citations

Teruhiko Yoshida, Shashi Shrivastav, Amin Abedini, Jeff Reece, Zeguo Sun +17 more

Reviewer #1 (Public Review): PKR activation-induced mitochondrial dysfunction in HIV-transgenic mice with nephropathy

(2023)10.7554/elife.91260.1.sa1

N/A

0DataRank · unranked

0 citations

Khun Zaw Latt, Avi Z. Rosenberg, Briana A. Santo, Komuraiah Myakala, Yu Ishimoto +12 more

Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

Genome biology(2024)10.1186/s13059-024-03294-8

N/A

0DataRank · unranked

40 citations

Luyao Ren, Cu Nguyen, Francesco Brundu, Lily Zheng, Yongmei Zhao +21 more

Mismatch repair protein MLH1 suppresses replicative stress in BRCA2-deficient breast tumors

Journal of Clinical Investigation(2024)10.1172/jci173718

N/A

0DataRank · unranked

11 citations

Xiaoju Hu, Vaishnavi Peddibhotla, Kuppusamy Balamurugan, Alexander Y. Mitrophanov, Lois McKennett +12 more

Toward a CRISPR-based mouse model of Vhl -deficient clear cell kidney cancer: Initial experience and lessons learned

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2408549121

N/A

0DataRank · unranked

10 citations

Wenhua Gao, Laura S. Schmidt, Kevin Bi, C. Ricketts, Vijyendra Ramesh +28 more

Serum microRNA Profiles and Pathways in Hepatitis B-Associated Hepatocellular Carcinoma: A South African Study

International Journal of Molecular Sciences(2024)10.3390/ijms25020975

N/A

0DataRank · unranked

7 citations

Benn Sartorius, Cheryl A. Winkler, Anil A. Chuturgoon, Tsai-Wei Shen, Yongmei Zhao +2 more

Single-Nucleus RNA Sequencing Reveals Loss of Distal Convoluted Tubule 1 Renal Tubules in HIV Viral Protein R Transgenic Mice

American Journal Of Pathology(2024)10.1016/j.ajpath.2024.06.006

N/A

0DataRank · unranked

1 citations

Teruhiko Yoshida, Shashi Shrivastav, Amin Abedini, Jeff Reece, Zeguo Sun +18 more

Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads

medRxiv(2024)10.1101/2024.03.22.24304756

N/A

0DataRank · unranked

21 citations

Asher Bryant, Tanveer Ahmad, Byunggil Yoo, Sergey Aganezov, Anton Goretsky +33 more

DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.16.608331

N/A

0DataRank · unranked

19 citations

Daniel E. Cook, Pi-Chuan Chang, Alexey Kolesnikov, Lucas Brambrink, Juan Carlos Mier +26 more

Preeclampsia in mice carrying fetuses with APOL1 risk variants

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.20.586039

N/A

0DataRank · unranked

4 citations

Khun Zaw Latt, Shashi Shrivastav, Huiyan Lü, Kimberly J. Reidy, Jennifer R. Charlton +6 more

Reviewer #1 (Public Review): PKR activation-induced mitochondrial dysfunction in HIV-transgenic mice with nephropathy

(2024)10.7554/elife.91260.2.sa1

N/A

0DataRank · unranked

0 citations

Khun Zaw Latt, Avi Z. Rosenberg, Briana A. Santo, Komuraiah Myakala, Yu Ishimoto +12 more

Self-amplifying NRF2–EZH2 epigenetic loop converts KRAS-initiated progenitors to invasive pancreatic cancer

Nature Cancer(2025)10.1038/s43018-025-01003-3

N/A

0DataRank · unranked

9 citations

Na Li, Ángeles Durán, Isidoro Cobo, Chiara Nicoletti, Kosuke Watari +37 more

Intrathecally expanded GZMK+/GZMH+ CD8 T cells targeting EBV antigens may reduce severity of Multiple Sclerosis

medRxiv(2025)10.1101/2025.08.05.25333071

N/A

0DataRank · unranked

2 citations

Péter Kósa, Francisco Otaizo‐Carrasquero, Dan E. Sturdevant, Amirhossein Shamsaddini, Yongmei Zhao +5 more

Mannose receptor (CD206) activation in tumor-associated macrophages enhances adaptive and innate antitumor immune responses

Science Translational Medicine(2020)10.1126/scitranslmed.aax6337

N/A

0DataRank · unranked

434 citations

Rushikesh Sable, Michael Ronzetti, Wendy Bautista, Zachary Knotts, Abisola Abisoye-Ogunniyan +37 more

Wakhan: reconstruction of chromosome-scale copy number profiles of tumor genomes with long-read sequencing

medRxiv(2025)10.64898/2025.12.11.25342098

N/A

0DataRank · unranked

0 citations

Ayse G. Keskus, Sergey Aganezov, Anton Goretsky, Isabel Rodriguez, Byunggil Yoo +23 more

A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples

Nature Biotechnology(2020)10.1038/s41587-020-00748-9

N/A

0DataRank · unranked

120 citations

Yongmei Zhao, Xin Chen, Zhaowei Yang, Xiaojiang Xu, Yingtao Bi +15 more

A Viral Exposure Signature Defines Early Onset of Hepatocellular Carcinoma

Cell(2020)10.1016/j.cell.2020.05.038

N/A

0DataRank · unranked

87 citations

Wei Tang, Anuradha Budhu, Marshonna Forgues, Maria O. Hernandez, Julián Candia +17 more

Optimization for Sequencing and Analysis of Degraded FFPE-RNA Samples

Journal of Visualized Experiments(2020)10.3791/61060

N/A

0DataRank · unranked

20 citations

Keyur Talsania, Bao Tran, Jyoti Shetty, Yongmei Zhao, Monika Mehta +1 more

Novel, abundant Drosha isoforms are deficient in miRNA processing in cancer cells

RNA Biology(2020)10.1080/15476286.2020.1813439

N/A

0DataRank · unranked

4 citations

Lillian Hallmark, Xavier Bofill-De Ros, Howard Crouch, Sean Chen, Tony Shi +6 more

Urine single cell RNA-sequencing in focal segmental glomerulosclerosis reveals inflammatory signatures in immune cells and podocytes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.18.343285

N/A

0DataRank · unranked

1 citations

Jurgen Heymann, Joseph Jessee, Avi Z. Rosenberg, Céline C. Berthier, Sean Eddy +13 more

Single-cell atlas of tumor cell evolution in response to therapy in hepatocellular carcinoma and intrahepatic cholangiocarcinoma

Journal of Hepatology(2021)10.1016/j.jhep.2021.06.028

N/A

0DataRank · unranked

387 citations

Limin Wang, Subreen A. Khatib, Ching-Wen Chang, S. Heinrich, Dana A. Dominguez +13 more

The tumour microenvironment shapes innate lymphoid cells in patients with hepatocellular carcinoma

Gut(2021)10.1136/gutjnl-2021-325288

N/A

0DataRank · unranked

116 citations

E. Michael Gertz, Alejandro A. Schäffer, Amanda J. Craig, Benjamin Ruf, Varun Subramanyam +22 more

Structure-guided bifunctional molecules hit a DEUBAD-lacking hRpn13 species upregulated in multiple myeloma

Nature Communications(2021)10.1038/s41467-021-27570-4

N/A

0DataRank · unranked

35 citations

Venkata R. Sabbasani, Vasty Osei-Amponsa, Christine N. Evans, Julianna C. King, Sergey G. Tarasov +16 more

T Cell–Mediated Antitumor Immunity Cooperatively Induced By TGFβR1 Antagonism and Gemcitabine Counteracts Reformation of the Stromal Barrier in Pancreatic Cancer

Molecular Cancer Therapeutics(2021)10.1158/1535-7163.mct-20-0620

N/A

0DataRank · unranked

18 citations

Nicholas P. Schaub, Theresa M. Guerin, Tashinga E. Bapiro, Frances M. Richards, Vicky Chen +17 more

Assessing reproducibility of inherited variants detected with short-read whole genome sequencing

Genome biology(2022)10.1186/s13059-021-02569-8

N/A

0DataRank · unranked

56 citations

Luyao Ren, Vitor Onuchic, Meijian Guan, Rebecca Kusko, Steve Bruinsma +50 more

Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

Genome biology(2022)10.1186/s13059-022-02816-6

N/A

0DataRank · unranked

46 citations

Tsai-Wei Shen, Xiongfong Chen, Erich Jaeger, Zhipan Li, Zhong Chen +34 more

IKKα-deficient lung adenocarcinomas generate an immunosuppressive microenvironment by overproducing Treg-inducing cytokines

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2120956119

N/A

0DataRank · unranked

19 citations

Xin Li, Buyong Ma, Jami Willette‐Brown, Feng Zhu, Chengfei Jiang +11 more

Serological responses to human virome define clinical outcomes of Italian patients infected with SARS-CoV-2

International Journal of Biological Sciences(2022)10.7150/ijbs.78002

N/A

0DataRank · unranked

7 citations

Julián Candia, Lichun Ma, Yongmei Zhao, Luisa Imberti, Alessandra Sottini +18 more

Epigenetic and Transcriptomic Programming of HSC Quiescence Signaling in Large for Gestational Age Neonates

International Journal of Molecular Sciences(2022)10.3390/ijms23137323

N/A

0DataRank · unranked

6 citations

Arnaud Carrier, Yongmei Zhao, Mickaël Canouil, Mehdi Derhourhi, Emmanuelle Durand +7 more

Extrachromosomal DNA Amplification Contributes to Small Cell Lung Cancer Heterogeneity and Is Associated with Worse Outcomes

Cancer Discovery(2023)10.1158/2159-8290.cd-22-0796

N/A

0DataRank · unranked

118 citations

Christopher W. Schultz, Lorenzo Rinaldi, Darawalee Wangsa, Christophe E. Redon, Nobuyuki Takahashi +32 more

hRpn13 shapes the proteome and transcriptome through epigenetic factors HDAC8, PADI4, and transcription factor NF-κB p50

Molecular Cell(2023)10.1016/j.molcel.2023.11.035

N/A

0DataRank · unranked

16 citations

Monika Chandravanshi, Xiuxiu Lu, Valentin Magidson, Sudipto Das, Þorkell Andrésson +10 more

APOL1 kidney risk variants in glomerular diseases modeled in transgenic mice

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.27.534273

N/A

0DataRank · unranked

4 citations

Khun Zaw Latt, Briana A. Santo, Shashi Shrivastav, Yongmei Zhao, Paride Fenaroli +8 more

Yongmei Zhao

Indexed papers

Top data-sharing exemplar

Papers