Matthew L. Bootsma

Also affiliated with University of Wisconsin Carbone Cancer Center, William S. Middleton Memorial Veterans Hospital

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer”.

Integrated analyses highlight interactions between the three-dimensional genome and DNA, RNA and epigenomic alterations in metastatic prostate cancer

Nature Genetics(2024)10.1038/s41588-024-01826-3

N/A

0.561DataRank · unranked

41 citations

Matthew L. Bootsma, Stanley Zhou, Raunak Shrestha, Thaidy Moreno-Rodriguez, Arian Lundberg +41 more

High-Purity CTC RNA Sequencing Identifies Prostate Cancer Lineage Phenotypes Prognostic for Clinical Outcomes

Cancer Discovery(2025)10.1158/2159-8290.cd-24-1509

N/A

0.425DataRank · unranked

16 citations

Jamie M. Sperger, Amy K. Taylor, Katharine E. Tippins, Shannon R. Reese, V. Carreño +31 more

Identification of phenocopies improves prediction of targeted therapy response over DNA mutations alone

npj Genomic Medicine(2022)10.1038/s41525-022-00328-7

N/A

0.411DataRank · unranked

8 citations

Kyle T. Helzer, Yeonhee Park, Yi Chen, Nicholas R. Rydzewski, Matthew L. Bootsma +8 more

Adverse prognosis gene expression patterns in metastatic castration‐resistant prostate cancer

Molecular Oncology(2025)10.1002/1878-0261.70001

N/A

0.280DataRank · unranked

4 citations

Eric Feng, Nicholas R. Rydzewski, Amy K. Taylor, Jamie M. Sperger, Yue Shi +22 more

A phenocopy signature of TP53 loss predicts response to chemotherapy

npj Precision Oncology(2024)10.1038/s41698-024-00722-7

N/A

0.208DataRank · unranked

3 citations

Marina N. Sharifi, Kyle T. Helzer, Yue Shi, Matthew L. Bootsma, Tianfu Andy Shang +11 more

A platform-independent AI tumor lineage and site (ATLAS) classifier

Communications Biology(2024)10.1038/s42003-024-05981-5

N/A

0.165DataRank · unranked

2 citations

Yue Shi, Chenxuan Li, Matthew R. Chrostek, Hamza Bakhtiar, Kyle T. Helzer +15 more

Transcriptomic Signatures of Monocyte‐Derived Macrophages Associate With Androgen Receptor Pathway Inhibitor Progression in Prostate Cancer

The Prostate(2025)10.1002/pros.70000

N/A

0DataRank · unranked

2 citations

Erika Héninger, Matthew L. Bootsma, Emma E. Recchia, Matthew T. Breneman, Amy K. Taylor +4 more

Circulating tumor cell (CTC) expression patterns of cell surface targets in metastatic prostate cancer.

Journal of Clinical Oncology(2025)10.1200/jco.2025.43.5_suppl.232

N/A

0DataRank · unranked

1 citations

Jamie M. Sperger, Amy K. Taylor, Katharine E. Tippins, Shannon R. Reese, Kyle T. Helzer +10 more

Intrinsic Molecular Subtypes of Metastatic Castration-Resistant Prostate Cancer

Clinical Cancer Research(2022)10.1158/1078-0432.ccr-22-2567

N/A

0DataRank · unranked

26 citations

Nicholas R. Rydzewski, Meng Zhang, Arian Lundberg, Matthew L. Bootsma, Kyle T. Helzer +7 more

Live Cell Sorting of Differentiated Primary Human Osteoclasts Allows Generation of Transcriptomic Signature Matrix

Research Square(2025)10.21203/rs.3.rs-6157400/v1

N/A

0DataRank · unranked

0 citations

Adeline B. Ding, Erika Héninger, Shannon R. Reese, Kyle T. Helzer, Xavier Hazelberg +7 more

Single cell phenotyping of PDL1 and HLA1 on circulating tumor cells (CTC) in clear cell renal cell carcinoma (ccRCC) on systemic treatment with immunotherapy (IO) and vascular endothelial growth factor receptor tyrosine kinase inhibitors (TKI).

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.6_suppl.381

N/A

0DataRank · unranked

0 citations

Matthew C. Mannino, Matthew L. Bootsma, Rory M. Bade, Meghan Wells, Jennifer L. Schehr +5 more

Fragmentomic analysis of circulating tumor DNA-targeted cancer panels

Annals of Oncology(2023)10.1016/j.annonc.2023.06.001

N/A

0DataRank · unranked

67 citations

Marina N. Sharifi, Jamie M. Sperger, Yue Shi, Matti Annala, Matthew L. Bootsma +29 more

Machine Learning & Molecular Radiation Tumor Biomarkers

Seminars in Radiation Oncology(2023)10.1016/j.semradonc.2023.03.002

N/A

0DataRank · unranked

9 citations

Kyle T. Helzer, Matthew L. Bootsma, Yue Shi, Hamza Bakhtiar, Martin Sjöström +2 more

Using microfluidic models to evaluate whether monocyte preconditioning plays a role in tumor-associated macrophage mediated resistance to hormone therapy in men with prostate cancer.

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.6_suppl.228

N/A

0DataRank · unranked

0 citations

Matthew L. Bootsma, Shuang G. Zhao, Emma E. Recchia, Matthew T. Breneman, David Kosoff

Analysis of cfDNA fragmentomics metrics and commercial targeted sequencing panels

Nature Communications(2025)10.1038/s41467-025-64153-z

N/A

0DataRank · unranked

8 citations

Marina N. Sharifi, Jamie M. Sperger, Matthew R. Chrostek, Matthew L. Bootsma, Shannon R. Reese +22 more