Inanc Birol

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

19.0Author DataRank

Indexed papers

6in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Comprehensive genomic characterization of squamous cell lung cancers

Nature(2012)10.1038/nature11404

Top 1%

11.0DataRank

Top 1%4036 citations

Gad Getz, Stephen E. Schumacher, Petar Stojanov, Chang‐Jiun Wu, Hailei Zhang +326 more

Papers

Driven by 39 papers — median percentile 92. Top paper: “Comprehensive genomic characterization of squamous cell lung cancers”.

Comprehensive genomic characterization of squamous cell lung cancers

Nature(2012)10.1038/nature11404

Top 1%

11.0DataRank

Top 1%4036 citations

Gad Getz, Stephen E. Schumacher, Petar Stojanov, Chang‐Jiun Wu, Hailei Zhang +326 more

The North American bullfrog draft genome provides insight into hormonal regulation of long noncoding RNA

Nature Communications(2017)10.1038/s41467-017-01316-7

Top 7%

3.3DataRank

Top 7%121 citations

René L. Warren, Benjamin P. Vandervalk, Erdi Kucuk, Hamza Khan, Ewan A. Gibb +15 more

Tigmint: correcting assembly errors using linked reads from large molecules

BMC Bioinformatics(2018)10.1186/s12859-018-2425-6

N/A

3.3DataRank · unranked

138 citations

Lauren Coombe, Justin Chu, Rene L. Warren, Benjamin P. Vandervalk, Sarah Yeo +6 more

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Nature Methods(2024)10.1038/s41592-024-02298-3

Top 8%

2.8DataRank

Top 8%216 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +80 more

Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2

Nature Communications(2023)10.1038/s41467-023-38553-y

N/A

1.2DataRank · unranked

50 citations

Saber Hafezqorani, Kristina Gagalova, Readman Chiu, Chen Yang, René L. Warren +2 more

ntLink: A Toolkit for De Novo Genome Assembly Scaffolding and Mapping Using Long Reads

Current Protocols(2023)10.1002/cpz1.733

N/A

1.0DataRank · unranked

58 citations

René L. Warren, Johnathan Wong, Vladimir Nikolić, Inanc Birol, Lauren Coombe

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.25.550582

Top 20%

0.991DataRank

Top 20%28 citations

Dingjie Wang, Fairlie Reese, Mark Diekhans, Sílvia Carbonell Sala, Brian A. Williams +78 more

HLA alleles measured from COVID-19 patient transcriptomes reveal associations with disease prognosis in a New York cohort

PeerJ(2021)10.7717/peerj.12368

Top 21%

0.962DataRank

Top 21%21 citations

Inanc Birol, René L. Warren

Konnector v2.0: pseudo-long reads from paired-end sequencing data

BMC Medical Genomics(2015)10.1186/1755-8794-8-s3-s1

N/A

0.730DataRank · unranked

23 citations

Chen Yang, Zhuyi Xue, Karthika Raghavan, Justin Chu, Hamid Mohamadi +5 more

LongStitch: high-quality genome assembly correction and scaffolding using long reads

BMC Bioinformatics(2021)10.1186/s12859-021-04451-7

N/A

0.666DataRank · unranked

84 citations

Janet X. Li, Theodora Lo, Johnathan Wong, Vladimir Nikolić, René L. Warren +2 more

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

Bioinformatics(2020)10.1093/bioinformatics/btaa253

N/A

0.571DataRank · unranked

44 citations

Vladimir Nikolić, Justin Chu, Inanc Birol, René L. Warren, Lauren Coombe

Trans-NanoSim characterizes and simulates nanopore RNA-sequencing data

GigaScience(2020)10.1093/gigascience/giaa061

N/A

0.542DataRank · unranked

36 citations

Chen Yang, Theodora Lo, Ka Ming Nip, René L. Warren, Inanc Birol +1 more

HLA predictions from the bronchoalveolar lavage fluid and blood samples of eight COVID-19 patients at the pandemic onset

Bioinformatics(2020)10.1093/bioinformatics/btaa756

N/A

0.529DataRank · unranked

33 citations

Inanc Birol, René L. Warren

aaHash: recursive amino acid sequence hashing

Bioinformatics Advances(2023)10.1093/bioadv/vbad162

N/A

0.104DataRank · unranked

1 citations

Parham Kazemi, Lauren Coombe, René L. Warren, Inanc Birol, Johnathan Wong

Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.19.469328

N/A

0.104DataRank · unranked

1 citations

Theodora Lo, Ka Ming Nip, Saber Hafezqorani, René L. Warren, Inanc Birol +1 more

LongStitch: High-quality genome assembly correction and scaffolding using long reads

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.17.448848

N/A

0DataRank · unranked

4 citations

Janet X. Li, Theodora Lo, Johnathan Wong, Vladimir Nikolić, René L. Warren +2 more

Interactive SARS-CoV-2 mutation timemaps

F1000Research(2021)10.12688/f1000research.50857.1

N/A

0DataRank · unranked

0 citations

Inanc Birol, René L. Warren

Characterization and Simulation of Metagenomic Nanopore Sequencing Data with Meta-NanoSim

Research Square(2021)10.21203/rs.3.rs-1125389/v1

N/A

0DataRank · unranked

0 citations

Theodora Lo, Ka Ming Nip, Saber Hafezqorani, René L. Warren, Inanc Birol +1 more

ntHash2: recursive spaced seed hashing for nucleotide sequences

Bioinformatics(2022)10.1093/bioinformatics/btac564

N/A

0DataRank · unranked

23 citations

Johnathan Wong, Vladimir Nikolić, Hamid Mohamadi, René L. Warren, Inanc Birol +1 more

btllib: A C++ library with Python interface forefficient genomic sequence processing

The Journal of Open Source Software(2022)10.21105/joss.04720

N/A

0DataRank · unranked

12 citations

Parham Kazemi, Lauren Coombe, Johnathan Wong, Amirhossein Afshinfard, Justin Chu +3 more

ntEdit+Sealer: Efficient Targeted Error Resolution and Automated Finishing of Long‐Read Genome Assemblies

Current Protocols(2022)10.1002/cpz1.442

N/A

0DataRank · unranked

11 citations

Lauren Coombe, Johnathan Wong, Inanc Birol, René L. Warren, Janet X. Li

Physlr: Next-Generation Physical Maps

DNA(2022)10.3390/dna2020009

N/A

0DataRank · unranked

7 citations

Shaun D. Jackman, Johnathan Wong, Lauren Coombe, Justin Chu, Vladimir Nikolić +5 more

RResolver: efficient short-read repeat resolution within ABySS

BMC Bioinformatics(2022)10.1186/s12859-022-04790-z

N/A

0DataRank · unranked

1 citations

Amirhossein Afshinfard, Justin Chu, Johnathan Wong, Lauren Coombe, Ka Ming Nip +3 more

Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.07.503110

N/A

0DataRank · unranked

7 citations

Saber Hafezqorani, Kristina Gagalova, Readman Chiu, Chen Yang, René L. Warren +2 more

GoldRush: A de novo long read genome assembler with linear time complexity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.25.513734

N/A

0DataRank · unranked

1 citations

Lauren Coombe, Vladimir Nikolić, Emily Zhang, Ka Ming Nip, Puneet Sidhu +3 more

Integrated genomic characterization of endometrial carcinoma

Carolina Digital Repository (University of North Carolina at Chapel Hill)(2020)10.17615/9sp1-1d11

N/A

0DataRank · unranked

0 citations

Stacey Gabriel, Elaine R. Mardis, Joelle Kalicki-Veizer, David J. Dooling, Rebecca Carlsen +27 more

The Somatic Genomic Landscape of Chromophobe Renal Cell Carcinoma

UNC Libraries(2020)10.17615/bd0j-6b91

N/A

0DataRank · unranked

0 citations

Kristen M. Leraas, Angela B. Smith, Michael J. Seiler, A. B. Clarke, Mark A. Jensen +95 more

Linear time complexity de novo long read genome assembly with GoldRush

Nature Communications(2023)10.1038/s41467-023-38716-x

N/A

0DataRank · unranked

39 citations

Lauren Coombe, Vladimir Nikolić, Emily Zhang, Ka Ming Nip, Puneet Sidhu +3 more

Models and data of AMPlify: a deep learning tool for antimicrobial peptide prediction

BMC Research Notes(2023)10.1186/s13104-023-06279-1

N/A

0DataRank · unranked

23 citations

René L. Warren, Inanc Birol, Chenkai Li

Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim

GigaScience(2023)10.1093/gigascience/giad013

N/A

0DataRank · unranked

20 citations

Theodora Lo, Ka Ming Nip, Saber Hafezqorani, René L. Warren, Inanc Birol +1 more

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.13.905240

N/A

0DataRank · unranked

1 citations

Vladimir Nikolić, Justin Chu, Inanc Birol, René L. Warren, Lauren Coombe

ntLink: a toolkit for de novo genome assembly scaffolding and mapping using long reads

arXiv (Cornell University)(2023)10.48550/arxiv.2301.08785

N/A

0DataRank · unranked

0 citations

René L. Warren, Johnathan Wong, Vladimir Nikolić, Inanc Birol, Lauren Coombe

aaHash: recursive amino acid sequence hashing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.08.539909

N/A

0DataRank · unranked

0 citations

Parham Kazemi, Lauren Coombe, René L. Warren, Inanc Birol, Johnathan Wong

AMPlify: attentive deep learning model for discovery of novel antimicrobial peptides effective against WHO priority pathogens

Research Square(2020)10.21203/rs.3.rs-120780/v1

N/A

0DataRank · unranked

14 citations

Darcy Sutherland, S. Austin Hammond, Chen Yang, Figali Taho, Lauren C. Bergman +8 more

ntRoot: Computational Inference of Human Ancestry at Scale from Genomic Data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.26.586646

N/A

0DataRank · unranked

2 citations

Lauren Coombe, Johnathan Wong, Parham Kazemi, Inanc Birol, René L. Warren

ntEmbd: Deep learning embedding for nucleotide sequences

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.30.591806

N/A

0DataRank · unranked

2 citations

Ka Ming Nip, Inanc Birol, Saber Hafezqorani

GapPredict – A Language Model for Resolving Gaps in Draft Genome Assemblies

IEEE/ACM Transactions on Computational Biology and Bioinformatics(2021)10.1109/tcbb.2021.3109557

N/A

0DataRank · unranked

7 citations

Justin Chu, Jessica Zhang, René L. Warren, Inanc Birol, Eric Chen

RNA-Bloom enables reference-free and reference-guided sequence assembly for single-cell transcriptomes

Genome Research(2020)10.1101/gr.260174.119

N/A

0DataRank · unranked

104 citations

Readman Chiu, Chen Yang, Justin Chu, Hamid Mohamadi, René L. Warren +2 more

RNA-Scoop: interactive visualization of transcripts in single-cell transcriptomes

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqab105

N/A

0DataRank · unranked

1 citations

Ka Ming Nip, Saber Hafezqorani, Kristina Gagalova, Chen Yang, René L. Warren +2 more

Inanc Birol

Indexed papers

Top data-sharing exemplar

Papers