🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

K. Vijay‐Shanker

University of Delaware

ORCID: 0000-0003-0958-3073
Computer ScienceBiochemistry, Genetics and Molecular BiologyPharmacology, Toxicology and Pharmaceutics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile
0.396Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts

Glycobiology(2025)10.1093/glycob/cwaf030
Top 56%
0.292DataRank
Top 56%4 citations

Urnisha Bhuiyan, Cyrus Chun Hong Au, Nathan Edwards, Luke R. Johnson, Sujeet Kulkarni +8 more

Papers

Driven by 8 papers — median percentile 33. Top paper: “GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts”.

GlycoSiteMiner: an ML/AI-assisted literature mining-based pipeline for extracting glycosylation sites from PubMed abstracts

Glycobiology(2025)10.1093/glycob/cwaf030
Top 56%
0.292DataRank
Top 56%4 citations

Urnisha Bhuiyan, Cyrus Chun Hong Au, Nathan Edwards, Luke R. Johnson, Sujeet Kulkarni +8 more

eMIND: Enabling automatic collection of protein variation impacts in Alzheimer’s disease from the literature

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.07.556602
Top 78%
0.104DataRank
Top 78%1 citations

Xihan Qin, Qinghua Wang, Julie Cowart, Hongzhan Huang, Cathy Wu +3 more

Investigation of improving the pre-training and fine-tuning of BERT model for biomedical relation extraction

BMC Bioinformatics(2022)10.1186/s12859-022-04642-w
N/A
0DataRank · unranked
56 citations

K. Vijay‐Shanker, Peng Su

Text mining of CHO bioprocess bibliome: Topic modeling and document classification

PLoS ONE(2023)10.1371/journal.pone.0274042
N/A
0DataRank · unranked
3 citations

Jonathan Olshin, K. Vijay‐Shanker, Cathy Wu, Qinghua Wang

KSMoFinder—knowledge graph embedding of proteins and motifs for predicting kinases of human phosphosites

Bioinformatics Advances(2024)10.1093/bioadv/vbaf289
N/A
0DataRank · unranked
1 citations

Karen Ross, Chuming Chen, K. Vijay‐Shanker, Cathy Wu, Manju Anandakrishnan

Improving BERT Model Using Contrastive Learning for Biomedical Relation Extraction

(2021)10.18653/v1/2021.bionlp-1.1
N/A
0DataRank · unranked
40 citations

Yifan Peng, K. Vijay‐Shanker, Peng Su

Predicting Behavioral Determinants of Health from Clinical Text Using Transformer Models and BiLSTM

medRxiv(2025)10.1101/2025.10.13.25337944
N/A
0DataRank · unranked
0 citations

Chuming Chen, Cathy Wu, K. Vijay‐Shanker, Saad Althabiti

Investigation of Improving The Pre-Training And Fine-Tuning of BERT Model For Biomedical Relation Extraction

Research Square(2021)10.21203/rs.3.rs-640112/v1
N/A
0DataRank · unranked
2 citations

K. Vijay‐Shanker, Peng Su