Raphael H. Valdivia

Immunology and MicrobiologyBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

An atlas of genetic variation for linking pathogen-induced cellular traits to human disease

10.1101/202325

Top 51%

0.345DataRank

Top 51%9 citations

Kelly J. Pittman, Jeffrey R. Barker, Raul E. Salinas, Ian B. Stanaway, Graham D. Williams +16 more

Papers

Driven by 25 papers — median percentile 49. Top paper: “Akkermansia in the gastrointestinal tract as a modifier of human health”.

Akkermansia in the gastrointestinal tract as a modifier of human health

Gut Microbes(2024)10.1080/19490976.2024.2406379

N/A

1.3DataRank · unranked

69 citations

Raphael H. Valdivia, María E. Panzetta

The bacterial effector GarD shields Chlamydia trachomatis inclusions from RNF213-mediated ubiquitylation and destruction

Cell Host & Microbe(2022)10.1016/j.chom.2022.08.008

N/A

0.635DataRank · unranked

68 citations

Jeffrey R. Reitano, Mary S Dickinson, Miriam Kutsch, Dulcemaria Hernandez, Alyson B. Barnes +8 more

Diet-derived metabolites and mucus link the gut microbiome to fever after cytotoxic cancer treatment

Science Translational Medicine(2022)10.1126/scitranslmed.abo3445

N/A

0.624DataRank · unranked

63 citations

Diana H. Wiesnoski, Chia‐Chi Chang, Wen-Bin Tsai, Dung Pham, Saira Ahmed +54 more

An endometrial organoid model of interactions between Chlamydia and epithelial and immune cells

Journal of Cell Science(2021)10.1242/jcs.252403

N/A

0.593DataRank · unranked

51 citations

Raphael H. Valdivia, Lee Dolat

The Chlamydia effector CpoS modulates the inclusion microenvironment and restricts the interferon response by acting on Rab35

mBio(2023)10.1128/mbio.03190-22

N/A

0.494DataRank · unranked

26 citations

Lana H. Jachmann, Gözde Türköz, Mohammed Rizwan Babu Sait, Lucía Peña‐Pérez, Oliver Kepp +4 more

Mechanism of 2′-fucosyllactose degradation by human-associated Akkermansia

Journal of Bacteriology(2024)10.1128/jb.00334-23

N/A

0.425DataRank · unranked

16 citations

Ashwana D. Fricker, Estefani Luna, Biswa Choudhury, Elizabeth R. Hughes, María E. Panzetta +3 more

An atlas of genetic variation for linking pathogen-induced cellular traits to human disease

10.1101/202325

Top 51%

0.345DataRank

Top 51%9 citations

Kelly J. Pittman, Jeffrey R. Barker, Raul E. Salinas, Ian B. Stanaway, Graham D. Williams +16 more

Mucin foraging enables Akkermansia muciniphila to compete against other microbes in the gut and to modulate host sterol biosynthesis

Research Square(2022)10.21203/rs.3.rs-1475049/v1

N/A

0.208DataRank · unranked

3 citations

Per Malkus, Max M. Villa, Lee Dolat, Zachary Holmes, Jeffrey Letourneau +5 more

Mechanism of 2’-Fucosyllactose degradation by Human-Associated Akkermansia

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.17.562767

N/A

0.104DataRank · unranked

1 citations

Ashwana D. Fricker, Estefani Luna, Biswa Choudhury, Elizabeth R. Hughes, María E. Panzetta +3 more

Spontaneous episodic inflammation in the intestines of mice lacking HNF4A is driven by microbiota and associated with early life microbiota alterations

mBio(2023)10.1128/mbio.01504-23

N/A

0DataRank · unranked

12 citations

Jayanth Jawahar, Lauren Davey, Jeffrey I. Everitt, Joseph A. Galanko, Chelsea Anderson +6 more

The acetylase activity of Cdu1 regulates bacterial exit from infected cells by protecting Chlamydia effectors from degradation

eLife(2023)10.7554/elife.87386

N/A

0DataRank · unranked

9 citations

Mateusz Kędzior, Robert K. Davidson, Stephen C. Walsh, Lee Dolat, Barbara S. Sixt +4 more

The acetylase activity of Cdu1 regulates bacterial exit from infected cells by protecting Chlamydia effectors from degradation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.28.530337

N/A

0DataRank · unranked

2 citations

Mateusz Kędzior, Robert K. Davidson, Stephen C. Walsh, Lee Dolat, Barbara S. Sixt +4 more

The acetylase activity of Cdu1 regulates bacterial exit from infected cells by protecting Chlamydia effectors from degradation

eLife(2024)10.7554/elife.87386.3

N/A

0DataRank · unranked

9 citations

Mateusz Kędzior, Robert K. Davidson, Stephen C. Walsh, Lee Dolat, Barbara S. Sixt +4 more

The Biology of Akkermansia

Annual Review of Microbiology(2025)10.1146/annurev-micro-051524-032131

N/A

0DataRank · unranked

9 citations

María E. Panzetta, Agastya Sharma, Raphael H. Valdivia, Elizabeth R. Hughes

Pathobiont-triggered induction of epithelial IDO1 drives regional susceptibility to Inflammatory Bowel Disease

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.04.630951

N/A

0DataRank · unranked

0 citations

Jiawei Wang, Erin P. Smith, Luisella Spiga, Alan J. Simmons, Tae Woo Kim +27 more

The Chlamydia effector Dre1 binds dynactin to reposition host organelles during infection

Cell Reports(2025)10.1016/j.celrep.2025.115509

N/A

0DataRank · unranked

0 citations

Komal Ishwar Pawar, Lee Dolat, Erin P. Smith, I-Chang Chang, Khavong Pha +12 more

A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expression

Nature Microbiology(2023)10.1038/s41564-023-01407-w

N/A

0DataRank · unranked

132 citations

Per Malkus, Max M. Villa, Lee Dolat, Zachary C. Holmes, Jeffrey Letourneau +5 more

Bacterial genetics and molecular pathogenesis in the age of high throughput DNA sequencing

Current Opinion in Microbiology(2020)10.1016/j.mib.2020.01.007

N/A

0DataRank · unranked

12 citations

Raphael H. Valdivia, Lauren Davey

An endometrial organoid model of Chlamydia -epithelial and immune cell interactions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.29.226969

N/A

0DataRank · unranked

4 citations

Raphael H. Valdivia, Lee Dolat

The Chlamydia Protease CPAF Regulates Host and Bacterial Proteins to Maintain Pathogen Vacuole Integrity and Promote Virulence

UNC Libraries(2020)10.17615/nnmh-5k60

N/A

0DataRank · unranked

0 citations

Vishar Amin, Raphael H. Valdivia, Ine Jørgensen, Beckley K. Davis, Dewey G. McCafferty +2 more

Human genetic diversity regulating the TLR10/TLR1/TLR6 locus confers increased cytokines in response to Chlamydia trachomatis

Human Genetics and Genomics Advances(2021)10.1016/j.xhgg.2021.100071

N/A

0DataRank · unranked

3 citations

Rachel M. Keener, Benjamin H. Schott, Liuyang Wang, Raphael H. Valdivia, Dennis C. Ko +1 more

Chlamydia repurposes the actin-binding protein EPS8 to disassemble epithelial tight junctions and promote infection

Cell Host & Microbe(2022)10.1016/j.chom.2022.10.013

N/A

0DataRank · unranked

23 citations

Victoria K. Carpenter, Yi-Shan Chen, Michitaka Suzuki, Erin P. Smith, Ozge S Kuddar +2 more

Chlamydia trachomatis effector Dre1 interacts with dynactin to reposition host organelles during infection

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.15.488217

N/A

0DataRank · unranked

10 citations

Lee Dolat, Eleanor McMahon, Danielle L. Swaney, Robert J. Bastidas, Jeffrey R. Johnson +5 more

The Chlamydia protein CpoS modulates the inclusion microenvironment and restricts the interferon response by acting on Rab35

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.18.481055

N/A

0DataRank · unranked

9 citations

Lana H. Jachmann, Lucía Peña‐Pérez, Oliver Kepp, Raphael H. Valdivia, Guido Kroemer +2 more

Modeling of variables in cellular infection reveals CXCL10 levels are regulated by human genetic variation and the Chlamydia-encoded CPAF protease

Scientific Reports(2020)10.1038/s41598-020-75129-y

N/A

0DataRank · unranked

17 citations

Alejandro L. Antonia, Liuyang Wang, Kelly J. Pittman, Barbara S. Sixt, Alyson B. Barnes +3 more

Raphael H. Valdivia

Indexed papers

Top data-sharing exemplar

Papers