Kaifu Chen

Also affiliated with Harvard University, Dana-Farber/Harvard Cancer Center, Boston Children's Museum, Bose (United States)

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 46 papers. Top paper: “Robust differentiation of human pluripotent stem cells into mural progenitor cells via transient activation of NKX3.1”.

Robust differentiation of human pluripotent stem cells into mural progenitor cells via transient activation of NKX3.1

Nature Communications(2024)10.1038/s41467-024-52678-8

N/A

0.661DataRank · unranked

15 citations

Yadong Zhang, Yonglin Zhu, Allen Chilun Luo, Liyan Gong, Daniel M. Tremmel +11 more

Reprogramming of bivalent chromatin states in NRAS mutant melanoma suggests PRC2 inhibition as a therapeutic strategy

Cell Reports(2021)10.1016/j.celrep.2021.109410

N/A

0.520DataRank · unranked

31 citations

Ming Tang, Mayinuer Maitituoheti, Ayush T. Raman, Archit K. Ghosh, Jonathan E. Schulz +21 more

Dynamic changes in P300 enhancers and enhancer-promoter contacts control mouse cardiomyocyte maturation

Developmental Cell(2023)10.1016/j.devcel.2023.03.020

N/A

0.515DataRank · unranked

30 citations

Nathan J. VanDusen, Yanchun Zhang, Yangpo Cao, Isha Sethi, Rong Hu +16 more

Fli1 + cells transcriptional analysis reveals an Lmo2–Prdm16 axis in angiogenesis

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2008559118

N/A

0.470DataRank · unranked

22 citations

Bo Xia, Kaifu Chen, Martin A. Denvir, Andrew H. Baker, John P. Cooke +1 more

EZH2 directly methylates PARP1 and regulates its activity in cancer

Science Advances(2024)10.1126/sciadv.adl2804

N/A

0.434DataRank · unranked

17 citations

Jiangchuan Shen, Yanan Ren, Qi Liu, Rui Wang, Qiaqia Li +18 more

Embryonic alcohol exposure in zebrafish predisposes adults to cardiomyopathy and diastolic dysfunction

Cardiovascular Research(2024)10.1093/cvr/cvae139

N/A

0.427DataRank · unranked

10 citations

Xinlei Gao, S. Basu, Jennifer Galdieri, Kaifu Chen, C. Geoffrey Burns +2 more

Role of Endothelial and Mesenchymal Cell Transitions in Heart Failure and Recovery Thereafter

Frontiers in Genetics(2021)10.3389/fgene.2020.609262

N/A

0.416DataRank · unranked

15 citations

Ana Sofia Cruz, Keith A. Youker, Hernan G. Marcos-Abdala, Rajarajan A. Thandavarayan, John P. Cooke +4 more

Defective efferocytosis of vascular cells in heart disease

Frontiers in Cardiovascular Medicine(2022)10.3389/fcvm.2022.1031293

N/A

0.406DataRank · unranked

14 citations

Kathryn Li, Kui Cui, Qianman Peng, Douglas B. Cowan, Da‐Zhi Wang +3 more

Heterozygous Kmt2d loss diminishes enhancers to render medulloblastoma cells vulnerable to combinatory inhibition of LSD1 and OXPHOS

Cell Reports(2025)10.1016/j.celrep.2025.115619

N/A

0.330DataRank · unranked

8 citations

Calena Brown, Ali A. Rizvi, Lauren A. Reed, Sivareddy Kotla, Constantin Zod +6 more

SCIG: Machine learning uncovers cell identity genes in single cells by genetic sequence codes

Nucleic Acids Research(2025)10.1093/nar/gkaf431

N/A

0.208DataRank · unranked

3 citations

Bo Xia, Yang Yu, Hong Chen, William T. Pu, Lili Zhang +2 more

Transcriptional inhibition after irradiation occurs preferentially at highly expressed genes in a manner dependent on cell cycle progression

eLife(2024)10.7554/elife.94001

N/A

0.165DataRank · unranked

2 citations

Xin Wang, Xinlei Gao, Nina Arslanovic, Kaifu Chen, Jessica K. Tyler +1 more

Epigenetic landscape reveals MECOM as an endothelial lineage regulator

Nature Communications(2023)10.1038/s41467-023-38002-w

N/A

0DataRank · unranked

49 citations

Shu Meng, Qilin Gu, Rongbin Zheng, Xinlei Gao, Jun‐Dae Kim +15 more

Low RNA stability signifies increased post-transcriptional regulation of cell identity genes

Nucleic Acids Research(2023)10.1093/nar/gkad300

N/A

0DataRank · unranked

43 citations

Yi Yang, Jie Lv, Xinlei Gao, Yang Yu, Sahana Suresh Babu +10 more

Early hyperlipidemia triggers metabolomic reprogramming with increased SAH, increased acetyl-CoA-cholesterol synthesis, and decreased glycolysis

Redox Biology(2023)10.1016/j.redox.2023.102771

N/A

0DataRank · unranked

20 citations

Fatma Saaoud, Ying Shao, Yifan Lu, Sheng Wu, Huaqing Zhao +6 more

Comprehensive analysis of intercellular communication in the thermogenic adipose niche

Communications Biology(2023)10.1038/s42003-023-05140-2

N/A

0DataRank · unranked

19 citations

Rongbin Zheng, Li‐Lun Ho, Kaifu Chen, Yu‐Hua Tseng, Farnaz Shamsi

Low RNA stability signifies strong expression regulatability of tumor suppressors

Nucleic Acids Research(2023)10.1093/nar/gkad838

N/A

0DataRank · unranked

12 citations

Yi Yang, Jie Lv, Yanqiang Li, A. Kulandaisamy, Sahana Suresh Babu +5 more

mt‐Ty 5'tiRNA regulates skeletal muscle cell proliferation and differentiation

Cell Proliferation(2023)10.1111/cpr.13416

N/A

0DataRank · unranked

4 citations

Xin Wang, Vivek M. Advani, Yao Wei Lu, Andrea P. Malizia, Gurinder Bir Singh +8 more

Unveiling the non-canonical functions of EZH2 in prostate cancer

Oncotarget(2023)10.18632/oncotarget.28357

N/A

0DataRank · unranked

2 citations

Yanqiang Li, Kaifu Chen, Qi Cao, Yi Yang

Heterozygous Kmt2d loss diminishes enhancers to render medulloblastoma cells vulnerable to combinatory inhibition of lysine demethylation and oxidative phosphorylation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.29.564587

N/A

0DataRank · unranked

0 citations

Calena Brown, Ali A. Rizvi, Lauren A. Reed, Sivareddy Kotla, Constantin Zod +6 more

Targeting endothelial FOXO1 protects diabetic β-cells and improves wound healing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.04.569948

N/A

0DataRank · unranked

0 citations

Kui Cui, Bo Zhu, Yao Wei Lu, Liang Sun, Qianyi Ma +28 more

2′-O-methylation at internal sites on mRNA promotes mRNA stability

Molecular Cell(2024)10.1016/j.molcel.2024.04.011

N/A

0DataRank · unranked

68 citations

Yi Yang, Xinlei Gao, Xin Wang, Dongyu Zhao, Rui Wang +7 more

The detection, function, and therapeutic potential of RNA 2'-O-methylation

The Innovation Life(2024)10.59717/j.xinn-life.2024.100112

N/A

0DataRank · unranked

10 citations

Yanqiang Li, Yi Yang, Yang Yu, Yunxia Wang, Lili Zhang +3 more

The therapeutic potential of targeting the CHD protein family in cancer

Pharmacology & Therapeutics(2024)10.1016/j.pharmthera.2024.108610

N/A

0DataRank · unranked

5 citations

Kaiyuan Wu, Weijie Zhang, Xia Lin, Qi Cao, Lili Zhang +2 more

TNIK regulation of interferon signaling and endothelial cell response to virus infection

Frontiers in Cardiovascular Medicine(2024)10.3389/fcvm.2023.1213428

N/A

0DataRank · unranked

3 citations

Abishai Dominic, Eleanor L. Davis, Sivareddy Kotla, Estefani Turcios Berrios, Arsany Fahim +14 more

Transcriptional inhibition after irradiation occurs preferentially at highly expressed genes in a manner dependent on cell cycle progression

eLife(2024)10.7554/elife.94001.3

N/A

0DataRank · unranked

1 citations

Xin Wang, Xinlei Gao, Nina Arslanovic, Kaifu Chen, Jessica K. Tyler +1 more

Transcriptional inhibition after irradiation occurs preferentially at highly expressed genes in a manner dependent on cell cycle progression

eLife(2024)10.7554/elife.94001.1

N/A

0DataRank · unranked

1 citations

Xin Wang, Xinlei Gao, Nina Arslanovic, Kaifu Chen, Jessica K. Tyler +1 more

Novel Role of Endothelial CD45 in Regulating Endothelial-to-Mesenchymal Transition in Atherosclerosis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.03.610974

N/A

0DataRank · unranked

1 citations

A. Kulandaisamy, Yao Wei Lu, Bo Zhu, Bandana Singh, Kui Cui +11 more

Reviewer #1 (Public Review): Transcriptional inhibition after irradiation occurs preferentially at highly expressed genes in a manner dependent on cell cycle progression

(2024)10.7554/elife.94001.1.sa1

N/A

0DataRank · unranked

0 citations

Xin Wang, Xinlei Gao, Nina Arslanovic, Kaifu Chen, Jessica K. Tyler +1 more

Rapid generation of functional vascular organoids via simultaneous transcription factor activation of endothelial and mural lineages

Cell stem cell(2025)10.1016/j.stem.2025.05.014

N/A

0DataRank · unranked

51 citations

Yadong Zhang, Yonglin Zhu, Umji Lee, Allen Chilun Luo, Xiang Li +10 more

EZH2 crosstalk with RNA methylation promotes prostate cancer progression through modulation of m6A autoregulation pathway

Journal of Clinical Investigation(2025)10.1172/jci195840

N/A

0DataRank · unranked

3 citations

Joshua Fry, Chaehyun Yum, Rui Wang, Siqi Wu, Sharath Narayan +20 more

O-GlcNAcylation promotes angiogenic transdifferentiation to reverse vascular ischemia

Nature Cardiovascular Research(2025)10.1038/s44161-025-00673-7

N/A

0DataRank · unranked

3 citations

Angqi Lu, Eric S Nagueh, Yanqiang Li, Michael Graber, K. Carter +8 more

Deficits in mitochondrial dynamics and iron balance result in templated insertions

Nature Communications(2025)10.1038/s41467-025-60546-2

N/A

0DataRank · unranked

2 citations

Yang Yu, Pilendra Kumar Thakre, Chloe Fox, Qian Li, Yunxia Wang +5 more

Protocol for mapping 2′-O-methylation using nanopore direct RNA-seq data with NanoNm

STAR Protocols(2025)10.1016/j.xpro.2025.104003

N/A

0DataRank · unranked

2 citations

Jiayi Chen, Yunxia Wang, D. M. Li, Jiahan Li, Yi Yang +4 more

The chemokine receptor CXCR4 and its ligand CXCL12 (SDF-1) localize to ependymal cilia in brain ventricles

Vascular Pharmacology(2025)10.1016/j.vph.2025.107546

N/A

0DataRank · unranked

2 citations

A. Kulandaisamy, Kui Cui, Hao Wu, Beibei Wang, Kaifu Chen +2 more

Reservoir of Fibroblasts Promotes Recovery From Limb Ischemia

Circulation(2020)10.1161/circulationaha.120.046872

N/A

0DataRank · unranked

64 citations

Jie Lv, Palas K. Chanda, Iris Owusu, Kaifu Chen, John P. Cooke +1 more

Dosage-sensitive RBFOX2 autoregulation promotes cardiomyocyte differentiation by maturing the transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.28.685214

N/A

0DataRank · unranked

0 citations

Feria A. Ladha, Yunxia Wang, Michael A. Trembley, Huimin Yin, Rongbin Zheng +14 more

Machine learning uncovers cell identity regulator by histone code

Nature Communications(2020)10.1038/s41467-020-16539-4

N/A

0DataRank · unranked

49 citations

Dongyu Zhao, Guangyu Wang, Min Zhang, Jie Lv, Alin S. Tomoiaga +8 more

Broad genic repression domains signify enhanced silencing of oncogenes

Nature Communications(2020)10.1038/s41467-020-18913-8

N/A

0DataRank · unranked

24 citations

Lili Zhang, Min Zhang, Bo Xia, Jie Lv, Xinlei Gao +10 more

TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcription

Genome biology(2020)10.1186/s13059-020-01992-7

N/A

0DataRank · unranked

8 citations

Qingshu Meng, Bo Xia, Shuo Zhang, Jie Lv, Dongyu Zhao +7 more

MACMIC Reveals Dual Role of CTCF in Epigenetic Regulation of Cell Identity Genes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.12.247361

N/A

0DataRank · unranked

1 citations

Bo Xia, Man Zhou, Jie Lv, Dongyu Zhao, Yanqiang Li +8 more

MACMIC Reveals a Dual Role of CTCF in Epigenetic Regulation of Cell Identity Genes

Genomics Proteomics & Bioinformatics(2021)10.1016/j.gpb.2020.10.008

N/A

0DataRank · unranked

8 citations

Bo Xia, Man Zhou, Jie Lv, Dongyu Zhao, Yanqiang Li +8 more

CHD6 promotes broad nucleosome eviction for transcriptional activation in prostate cancer cells

Nucleic Acids Research(2022)10.1093/nar/gkac1090

N/A

0DataRank · unranked

10 citations

Min Zhang, Shaodong Huang, Qi Liu, Sen Zhu, Yanqiang Li +6 more

Mutation of mutator genes marks immunotherapy efficacy

Research Square(2022)10.21203/rs.3.rs-1541499/v1

N/A

0DataRank · unranked

0 citations

Xin Wang, Dongyu Zhao, Yanqiang Li, Yu Yang, Grzegorz Ira +2 more

Comprehensive analysis of intercellular communication in thermogenic adipose niche

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.28.509990

N/A

0DataRank · unranked

0 citations

Rongbin Zheng, Li‐Lun Ho, Kaifu Chen, Yu‐Hua Tseng, Farnaz Shamsi

Comprehensive analysis of intercellular communication in thermogenic adipose niche

Research Square(2022)10.21203/rs.3.rs-2298724/v1

N/A

0DataRank · unranked

0 citations

Rongbin Zheng, Li‐Lun Ho, Kaifu Chen, Yu‐Hua Tseng, Farnaz Shamsi

Epigenetic Induction of Smooth Muscle Cell Phenotypic Alterations in Aortic Aneurysms and Dissections

Circulation(2023)10.1161/circulationaha.123.063332

N/A

0DataRank · unranked

144 citations

Yanming Li, Chen Zhang, Yang Li, Kimberly R. Rebello, Shengyu Li +10 more