Ryan L. Hayes

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 11 papers. Top paper: “A strategy for proline and glycine mutations to proteins with alchemical free energy calculations”.

A strategy for proline and glycine mutations to proteins with alchemical free energy calculations

Journal of Computational Chemistry(2021)10.1002/jcc.26525

N/A

0.500DataRank · unranked

27 citations

Charles L. Brooks, Ryan L. Hayes

BLaDE: A Basic Lambda Dynamics Engine for GPU-Accelerated Molecular Dynamics Free Energy Calculations

Journal of Chemical Theory and Computation(2021)10.1021/acs.jctc.1c00833

N/A

0DataRank · unranked

52 citations

Joshua Buckner, Charles L. Brooks, Ryan L. Hayes

Generalizing the Discrete Gibbs Sampler-Based λ-Dynamics Approach for Multisite Sampling of Many Ligands

Journal of Chemical Theory and Computation(2021)10.1021/acs.jctc.1c00176

N/A

0DataRank · unranked

15 citations

Xinqiang Ding, Ryan L. Hayes, Charles L. Brooks, Jonah Z. Vilseck

Optimizing Multisite λ-Dynamics Throughput with Charge Renormalization

Journal of Chemical Information and Modeling(2022)10.1021/acs.jcim.2c00047

N/A

0DataRank · unranked

16 citations

Luis F. Cervantes, Ryan L. Hayes, Charles L. Brooks, Jonah Z. Vilseck

Addressing Intersite Coupling Unlocks Large Combinatorial Chemical Spaces for Alchemical Free Energy Methods

Journal of Chemical Theory and Computation(2022)10.1021/acs.jctc.1c00948

N/A

0DataRank · unranked

15 citations

Jonah Z. Vilseck, Charles L. Brooks, Ryan L. Hayes

Fast free energy estimates from λ-dynamics with bias-updated Gibbs sampling

Nature Communications(2023)10.1038/s41467-023-44208-9

N/A

0DataRank · unranked

26 citations

Ryan L. Hayes, Xinqiang Ding, Brian Pulawski, Jonah Z. Vilseck, Michael T. Robo

CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed

The Journal of Physical Chemistry B(2024)10.1021/acs.jpcb.4c04100

N/A

0DataRank · unranked

116 citations

Steven L. Austin, Arnaud Blondel, Eric D. Boittier, Stefan Boresch, Matthias Buck +68 more

Selection pressures on evolution of ribonuclease H explored with rigorous free–energy–based design

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2312029121

N/A

0DataRank · unranked

10 citations

Charlotte Nixon, Susan Marqusee, Charles L. Brooks, Ryan L. Hayes

Accurate in silico predictions of modified RNA interactions to a prototypical RNA-binding protein with λ-dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.10.627848

N/A

0DataRank · unranked

0 citations

Yash Bhargava, Elzbieta Kierzek, Ryszard Kierzek, Ryan L. Hayes, Wen Zhang +3 more

Automated, Accurate, and Scalable Relative Protein–Ligand Binding Free-Energy Calculations Using Lambda Dynamics

Journal of Chemical Theory and Computation(2020)10.1021/acs.jctc.0c00830

N/A

0DataRank · unranked

79 citations

Thomas J. Paul, Ryan L. Hayes, Charles L. Brooks, E. Prabhu Raman

Multiple Molecule λ-Dynamics: Probing Drug Resistance with Concurrent Protein and Ligand Perturbations

ChemRxiv(2025)10.26434/chemrxiv-2025-m0129

N/A

0DataRank · unranked

0 citations

Ryan L. Hayes, Charles L. Brooks, Jonah Z. Vilseck, Michael P. Liesen