🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Marcus Hooper

Allen Institute

ORCID: 0000-0003-1228-5958

Biochemistry, Genetics and Molecular BiologyNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 15 papers. Top paper: “Single-cell ATAC-seq of fetal human retina and stem-cell-derived retinal organoids shows changing chromatin landscapes during cell fate acquisition”.

Single-cell ATAC-seq of fetal human retina and stem-cell-derived retinal organoids shows changing chromatin landscapes during cell fate acquisition

Cell Reports(2022)10.1016/j.celrep.2021.110294

N/A

0.691DataRank · unranked

99 citations

Isabel Ortuño-Lizarán, Akshayalakshmi Sridhar, Marcus Hooper, Sidnee Petter, Thomas A. Reh +1 more

A suite of enhancer AAVs and transgenic mouse lines for genetic access to cortical cell types

Cell(2025)10.1016/j.cell.2025.05.002

N/A

0.604DataRank · unranked

55 citations

Marcus Hooper, Sujatha Narayan, Tanya L. Daigle, Deepanjali Dwivedi, Sharon W. Way +95 more

Enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits

Neuron(2025)10.1016/j.neuron.2025.04.035

N/A

0.568DataRank · unranked

43 citations

Morgan Wirthlin, Gursajan Gill, Nelson Johansen, Marcus Hooper, Victoria Omstead +95 more

Evaluating methods for the prediction of cell-type-specific enhancers in the mammalian cortex

Cell Genomics(2025)10.1016/j.xgen.2025.100879

N/A

0.425DataRank · unranked

16 citations

Niklas Kempynck, Nathan R. Zemke, Saroja Somasundaram, Seppe De Winter, Marcus Hooper +29 more

A multiplexed, single-cell sequencing screen identifies compounds that increase neurogenic reprogramming of murine Muller glia

eLife(2023)10.7554/elife.92091

N/A

0.322DataRank · unranked

7 citations

Marcus Hooper, Levi Todd, Faith Kierney, Nicolai Blasdel, Cole Trapnell +2 more

Evaluating Methods for the Prediction of Cell Type-Specific Enhancers in the Mammalian Cortex

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.21.609075

N/A

0.241DataRank · unranked

4 citations

Niklas Kempynck, Nathan R. Zemke, Saroja Somasundaram, Seppe De Winter, Marcus Hooper +29 more

A multiplexed, single-cell sequencing screen identifies compounds that increase neurogenic reprogramming of murine Muller glia

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.26.559569

N/A

0.104DataRank · unranked

1 citations

Marcus Hooper, Levi Todd, Faith Kierney, Nicolai Blasdel, Cole Trapnell +2 more

Reviewer #1 (Public Review): A multiplexed, single-cell sequencing screen identifies compounds that increase neurogenic reprogramming of murine Muller glia

(2024)10.7554/elife.92091.2.sa1

N/A

0DataRank · unranked

0 citations

Marcus Hooper, Levi Todd, Faith Kierney, Nicolai Blasdel, Cole Trapnell +2 more

A multiplexed, single-cell sequencing screen identifies compounds that increase neurogenic reprogramming of murine Muller glia

(2023)10.7554/elife.92091.1

N/A

0DataRank · unranked

0 citations

Marcus Hooper, Levi Todd, Faith Kierney, Nicolai Blasdel, Cole Trapnell +2 more

Developmental changes in the accessible chromatin, transcriptome and Ascl1-binding correlate with the loss in Müller Glial regenerative potential

Scientific Reports(2020)10.1038/s41598-020-70334-1

N/A

0DataRank · unranked

41 citations

Stefanie G. Wohl, Matthew S. Wilken, Marcus Hooper, Connor Finkbeiner, Kristin E. Cox +3 more

Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues

eLife(2023)10.7554/elife.91979

N/A

0DataRank · unranked

21 citations

Jayaram Chandrashekar, Sonya Vasquez, Cameron Arshadi, Rajvi Javeri, Naveen Ouellette +29 more

Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.08.544277

N/A

0DataRank · unranked

13 citations

Jayaram Chandrashekar, Sonya Vasquez, Cameron Arshadi, Rajvi Javeri, Naveen Ouellette +29 more

Reviewer #1 (Public Review): A multiplexed, single-cell sequencing screen identifies compounds that increase neurogenic reprogramming of murine Muller glia

(2023)10.7554/elife.92091.1.sa1

N/A

0DataRank · unranked

0 citations

Marcus Hooper, Levi Todd, Faith Kierney, Nicolai Blasdel, Cole Trapnell +2 more

STAT Signaling Modifies Ascl1 Chromatin Binding and Limits Neural Regeneration from Muller Glia in Adult Mouse Retina

Cell Reports(2020)10.1016/j.celrep.2020.01.075

N/A

0DataRank · unranked

138 citations

Matthew S. Wilken, Levi Todd, Connor Finkbeiner, Paul A. Nakamura, Nicholas Radulovich +6 more

Enhancer AAV toolbox for accessing and perturbing striatal cell types and circuits

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.27.615553

N/A

0DataRank · unranked

14 citations

Morgan Wirthlin, Gursajan Gill, Nelson Johansen, Marcus Hooper, Victoria Omstead +95 more