Arup K. Chakraborty

Also affiliated with Massachusetts Institute of Technology

Immunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 28 papers. Top paper: “A model for organization and regulation of nuclear condensates by gene activity”.

A model for organization and regulation of nuclear condensates by gene activity

Nature Communications(2023)10.1038/s41467-023-39878-4

N/A

1.1DataRank · unranked

49 citations

Pradeep Natarajan, Arup K. Chakraborty, Krishna Shrinivas, Halima H. Schede

RNA-Mediated Feedback Control of Transcriptional Condensates

Cell(2020)10.1016/j.cell.2020.11.030

N/A

0.960DataRank · unranked

602 citations

Ozgur Oksuz, Krishna Shrinivas, Ido Sagi, Gary LeRoy, Ming Zheng +10 more

Learning from HIV-1 to predict the immunogenicity of T cell epitopes in SARS-CoV-2

iScience(2021)10.1016/j.isci.2021.102311

N/A

0.868DataRank · unranked

16 citations

Zhilin Chen, Assaf Amitai, Julia Doelger, Vamsee Mallajosyula, Emily Sundquist +7 more

Roadmap on biology in time varying environments

Physical Biology(2021)10.1088/1478-3975/abde8d

N/A

0.561DataRank · unranked

41 citations

Kabir Husain, Michael J. Rust, Chelsea Hepler, Joseph Bass, Julian MJ Pietsch +16 more

Predominance of positive epistasis among drug resistance-associated mutations in HIV-1 protease

PLoS Genetics(2020)10.1371/journal.pgen.1009009

N/A

0.553DataRank · unranked

39 citations

Lei Dai, John P. Barton, Yushen Du, Yuxiang Tan, Wenwen Pang +4 more

Proteolethargy is a pathogenic mechanism in chronic disease

Cell(2024)10.1016/j.cell.2024.10.051

N/A

0.494DataRank · unranked

26 citations

Ming Zheng, Shannon Moreno, Jesse M. Platt, An T. Hoang, Deepti Kannan +10 more

Design of immunogens for eliciting antibody responses that may protect against SARS-CoV-2 variants

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010563

N/A

0.330DataRank · unranked

8 citations

Arup K. Chakraborty, Eric Wang

Two-dose “extended priming” immunization amplifies humoral immune responses by synchronizing vaccine delivery with the germinal center response

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.20.563479

N/A

0.269DataRank · unranked

5 citations

Leerang Yang, Laura Maiorino, Elana Ben‐Akiva, Kristen A. Rodrigues, Anna Romanov +7 more

Repeated vaccination with homologous influenza hemagglutinin broadens human antibody responses to unmatched flu viruses

eLife(2025)10.7554/elife.107042

N/A

0.104DataRank · unranked

1 citations

Melbourne Tang, Ted M. Ross, Aaron G. Schmidt, Arup K. Chakraborty, Daniel Lingwood +1 more

Repeated vaccination with homologous influenza hemagglutinin broadens human antibody responses to unmatched flu viruses

medRxiv(2024)10.1101/2024.03.27.24303943

N/A

0.104DataRank · unranked

1 citations

Melbourne Tang, Ted M. Ross, Aaron G. Schmidt, Arup K. Chakraborty, Daniel Lingwood +1 more

Inferring the intrinsic mutational fitness landscape of influenzalike evolving antigens from temporally ordered sequence data

Physical review. E(2022)10.1103/physreve.105.024401

N/A

0DataRank · unranked

1 citations

Mehran Kardar, Arup K. Chakraborty, Julia Doelger

Mechanisms that promote the evolution of cross-reactive antibodies upon vaccination with designed influenza immunogens

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.02.518838

N/A

0DataRank · unranked

1 citations

Timothy M. Caradonna, Aaron G. Schmidt, Arup K. Chakraborty, Leerang Yang

Antigen presentation dynamics shape the antibody response to variants like SARS-CoV-2 Omicron after multiple vaccinations with the original strain

Cell Reports(2023)10.1016/j.celrep.2023.112256

N/A

0DataRank · unranked

51 citations

Matthew Van Beek, Zijun Wang, Frauke Muecksch, Marie Canis, Théodora Hatziioannou +4 more

Mechanisms that promote the evolution of cross-reactive antibodies upon vaccination with designed influenza immunogens

Cell Reports(2023)10.1016/j.celrep.2023.112160

N/A

0DataRank · unranked

6 citations

Timothy M. Caradonna, Aaron G. Schmidt, Arup K. Chakraborty, Leerang Yang

Two-dose priming immunization amplifies humoral immunity by synchronizing vaccine delivery with the germinal center response

Science Immunology(2024)10.1126/sciimmunol.adl3755

N/A

0DataRank · unranked

26 citations

Leerang Yang, Jonathan Lam, Laura Maiorino, Elana Ben‐Akiva, Kristen A. Rodrigues +8 more

Minimal framework for optimizing vaccination protocols targeting highly mutable pathogens

Physical review. E(2024)10.1103/physreve.110.064137

N/A

0DataRank · unranked

4 citations

Pranav Murugan, Arup K. Chakraborty, Mehran Kardar, Saeed Mahdisoltani

Designed mosaic nanoparticles enhance cross-reactive immune responses in mice

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.28.582544

N/A

0DataRank · unranked

4 citations

Alexander A. Cohen, Luis F. Caldera, Jennifer R. Keeffe, Annie V. Rorick, Yusuf M. Aida +4 more

Designed mosaic nanoparticles enhance cross-reactive immune responses in mice

Cell(2025)10.1016/j.cell.2024.12.015

N/A

0DataRank · unranked

25 citations

Alexander A. Cohen, Luis F. Caldera, Jennifer R. Keeffe, Annie V. Rorick, Yusuf M Adia +4 more

A unifying model of LAT condensates in reconstitution experiments

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.31.685772

N/A

0DataRank · unranked

0 citations

Simou Sun, Mehran Kardar, Jay T. Groves, Arup K. Chakraborty, Yannick A. D. Omar

Defining and Manipulating B Cell Immunodominance Hierarchies to Elicit Broadly Neutralizing Antibody Responses against Influenza Virus

Cell Systems(2020)10.1016/j.cels.2020.09.005

N/A

0DataRank · unranked

75 citations

Maya Sangesland, Ralston M. Barnes, Daniel Rohrer, Nils Lönberg, Daniel Lingwood +2 more

Partitioning of cancer therapeutics in nuclear condensates

Science(2020)10.1126/science.aaz4427

N/A

0DataRank · unranked

528 citations

Ann Boija, Lena K. Afeyan, Susana Wilson Hawken, Mengyang Fan, Alessandra Dall’Agnese +27 more

How the T cell signaling network processes information to discriminate between self and agonist ligands

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2008303117

N/A

0DataRank · unranked

64 citations

Wan‐Lin Lo, Darren B. McAffee, Jay T. Groves, Arthur Weiss, Arup K. Chakraborty +1 more

Predicting the Immunogenicity of T cell epitopes: From HIV to SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.14.095885

N/A

0DataRank · unranked

22 citations

Zhilin Chen, Florencia Segal, Mary Carrington, Hendrik Streeck, Arup K. Chakraborty +2 more

Mechanisms underlying vaccination protocols that may optimally elicit broadly neutralizing antibodies against highly mutable pathogens

Physical review. E(2021)10.1103/physreve.103.052408

N/A

0DataRank · unranked

17 citations

Arup K. Chakraborty, Raman Ganti

Design of immunogens to elicit broadly neutralizing antibodies against HIV targeting the CD4 binding site

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2018338118

N/A

0DataRank · unranked

16 citations

Kevin J. Kaczorowski, Ge Song, Katelyn Porter, Raiees Andrabi, Dennis R. Burton +3 more

Adenovirus-vectored vaccine containing multidimensionally conserved parts of the HIV proteome is immunogenic in rhesus macaques

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2022496118

N/A

0DataRank · unranked

8 citations

John P. Barton, Lauren Peter, Abishek Chandrashekar, Esther A. Bondzie, Ang Gao +3 more

A simple model for how the risk of pandemics from different virus families depends on viral and human traits

medRxiv(2021)10.1101/2021.03.17.21253813

N/A

0DataRank · unranked

0 citations

Arup K. Chakraborty, Mehran Kardar, Julia Doelger

Inferring the intrinsic mutational fitness landscape of influenza-like evolving antigens from temporally ordered sequence data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.454153

N/A

0DataRank · unranked

0 citations

Mehran Kardar, Arup K. Chakraborty, Julia Doelger