Michael Baym

Also affiliated with Center for Systems Biology

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “Perfect as the enemy of good: tracing transmissions with low-sensitivity tests to mitigate SARS-CoV-2 outbreaks”.

Perfect as the enemy of good: tracing transmissions with low-sensitivity tests to mitigate SARS-CoV-2 outbreaks

The Lancet Microbe(2021)10.1016/s2666-5247(21)00004-5

N/A

0.434DataRank · unranked

17 citations

Michael Baym, William P. Hanage, Lee Kennedy‐Shaffer

Efficient and Robust Search of Microbial Genomes via Phylogenetic Compression

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.15.536996

N/A

0.416DataRank · unranked

15 citations

Leandro Lima, Simone Pignotti, Natalia Quinones-Olvera, Kamil Salikhov, Rayan Chikhi +4 more

Diverse and abundant phages exploit conjugative plasmids

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.19.532758

N/A

0.345DataRank · unranked

9 citations

Siân V. Owen, Lucy M. McCully, Maximillian G. Marin, Eleanor A. Rand, Alice C. Fan +7 more

The gut bacterial natural product colibactin triggers induction of latent viruses in diverse bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.24.445430

N/A

0.208DataRank · unranked

3 citations

Joel W. H. Wong, Siân V. Owen, Michael Baym, Emily P. Balskus, Justin E. Silpe

Prophages encode phage-defense systems with cognate self-immunity

Cell Host & Microbe(2021)10.1016/j.chom.2021.09.002

N/A

0DataRank · unranked

137 citations

Nicolas Wenner, Charles L. Dulberger, Ella V. Rodwell, Arthur Bowers-Barnard, Natalia Quinones-Olvera +6 more

Simplitigs as an efficient and scalable representation of de Bruijn graphs

Genome biology(2021)10.1186/s13059-021-02297-z

N/A

0DataRank · unranked

49 citations

Michael Baym, Grégory Kucherov, Karel Břinda

Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification

medRxiv(2021)10.1101/2021.08.31.21262938

N/A

0DataRank · unranked

37 citations

Alessandro Zulli, Isabel M. Ott, Mary E. Petrone, Tara Alpert, Joseph R. Fauver +21 more

Decreased thermal tolerance as a trade-off of antibiotic resistance

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.05.438396

N/A

0DataRank · unranked

2 citations

Michael Baym, Cristina M. Herren

The gut bacterial natural product colibactin triggers induction of latent viruses in diverse bacteria

Research Square(2021)10.21203/rs.3.rs-574343/v1

N/A

0DataRank · unranked

1 citations

Joel W. H. Wong, Siân V. Owen, Michael Baym, Emily P. Balskus, Justin E. Silpe

The bacterial toxin colibactin triggers prophage induction

Nature(2022)10.1038/s41586-022-04444-3

N/A

0DataRank · unranked

128 citations

Joel W. H. Wong, Siân V. Owen, Michael Baym, Emily P. Balskus, Justin E. Silpe

Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques

Genome biology(2022)10.1186/s13059-022-02805-9

N/A

0DataRank · unranked

55 citations

Alessandro Zulli, Isabel M. Ott, Ioanna Nika, Mart J. van der Lugt, Mary E. Petrone +48 more

Decreased thermal niche breadth as a trade-off of antibiotic resistance

The ISME Journal(2022)10.1038/s41396-022-01235-6

N/A

0DataRank · unranked

48 citations

Michael Baym, Cristina M. Herren

Resolving deleterious and near-neutral effects requires different pooled fitness assay designs

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.19.504558

N/A

0DataRank · unranked

2 citations

Michael Baym, Anurag Limdi

A swapped genetic code prevents viral infections and gene transfer

Nature(2023)10.1038/s41586-023-05824-z

N/A

0DataRank · unranked

96 citations

Svenja Vinke, Regan Flynn, Siân V. Owen, Eleanor A. Rand, Bogdan Budnik +11 more

Mycobacterial nucleoid-associated protein Lsr2 is required for productive mycobacteriophage infection

Nature Microbiology(2023)10.1038/s41564-023-01333-x

N/A

0DataRank · unranked

28 citations

Carlos A. Guerrero-Bustamante, Siân V. Owen, Sean Wilson, Michael Wuo, Rebecca A. Garlena +11 more

Changing fitness effects of mutations through long-term bacterial evolution

Science(2024)10.1126/science.add1417

N/A

0DataRank · unranked

76 citations

Anurag Limdi, Mélanie Magnan, Siân V. Owen, Cristina M. Herren, Richard E. Lenski +3 more

Diverse and abundant phages exploit conjugative plasmids

Nature Communications(2024)10.1038/s41467-024-47416-z

N/A

0DataRank · unranked

59 citations

Siân V. Owen, Lucy M. McCully, Maximillian G. Marin, Eleanor A. Rand, Alice C. Fan +7 more

From Petri Dishes to Patients to Populations: Scales and Evolutionary Mechanisms Driving Antibiotic Resistance

Annual Review of Microbiology(2024)10.1146/annurev-micro-041522-102707

N/A

0DataRank · unranked

24 citations

Indra González Ojeda, Michael Baym, Célia Souque

Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing

Nature Microbiology(2020)10.1038/s41564-019-0656-6

N/A

0DataRank · unranked

109 citations

Alanna Callendrello, C. Kevin, Derek R. MacFadden, Themoula Charalampous, Robyn S Lee +8 more

Efficient and robust search of microbial genomes via phylogenetic compression

Nature Methods(2025)10.1038/s41592-025-02625-2

N/A

0DataRank · unranked

13 citations

Leandro Lima, Simone Pignotti, Natalia Quinones-Olvera, Kamil Salikhov, Rayan Chikhi +4 more

Escape mutations circumvent a tradeoff between resistance to a beta-lactam and resistance to a beta-lactamase inhibitor

Nature Communications(2020)10.1038/s41467-020-15666-2

N/A

0DataRank · unranked

42 citations

Fabian Glaser, Einat Shaer Tamar, Idan Yelin, Michael Baym, Eric D. Kelsic +4 more

Prophage-encoded phage defense proteins with cognate self-immunity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.13.199331

N/A

0DataRank · unranked

15 citations

Nicolas Wenner, Charles L. Dulberger, Ella V. Rodwell, Arthur Bowers-Barnard, Natalia Quinones-Olvera +6 more

Simplitigs as an efficient and scalable representation of de Bruijn graphs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.12.903443

N/A

0DataRank · unranked

13 citations

Michael Baym, Grégory Kucherov, Karel Břinda