🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Qingrong Chen

University of Nottingham

ORCID: 0000-0003-1325-6147

Also affiliated with National Cancer Institute, Institute of Infection and Immunity

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 2%percentile
3.4Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing

Nature Biotechnology(2021)10.1038/s41587-021-00993-6
Top 8%
2.7DataRank
Top 8%153 citations

Bin Zhu, Yongmei Zhao, Wanqiu Chen, Zhaowei Yang, Liz Kerrigan +88 more

Papers

Driven by 36 papers — median percentile 45. Top paper: “Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing”.

Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing

Nature Biotechnology(2021)10.1038/s41587-021-00994-5
N/A
3.8DataRank · unranked
215 citations

Luyao Ren, Zhong Chen, Li Tai Fang, Yongmei Zhao, Justin Lack +85 more

Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing

Nature Biotechnology(2021)10.1038/s41587-021-00993-6
Top 8%
2.7DataRank
Top 8%153 citations

Bin Zhu, Yongmei Zhao, Wanqiu Chen, Zhaowei Yang, Liz Kerrigan +88 more

Evaluation of somatic copy number variation detection by NGS technologies and bioinformatics tools on a hyper-diploid cancer genome

Genome biology(2024)10.1186/s13059-024-03294-8
N/A
1.0DataRank · unranked
40 citations

Luyao Ren, Cu Nguyen, Francesco Brundu, Lily Zheng, Yongmei Zhao +21 more

Cross-Site Concordance Evaluation of Tumor DNA and RNA Sequencing Platforms for the CIMAC-CIDC Network

Clinical Cancer Research(2020)10.1158/1078-0432.ccr-20-3251
Top 32%
0.613DataRank
Top 32%15 citations

Jingxin Fu, Carrie Cibulskis, Aashna Jhaveri, Curtis Gumbs, Biswajit Das +41 more

Cellular fate of a plant virus immunotherapy candidate

Communications Biology(2024)10.1038/s42003-024-06982-0
N/A
0.481DataRank · unranked
19 citations

Jessica Fernanda Affonso de Oliveira, Lucas Sutorus, Sweta Karan, Zhongchao Zhao, Barry W. Neun +9 more

Ten challenges and opportunities in computational immuno-oncology

Journal for ImmunoTherapy of Cancer(2024)10.1136/jitc-2024-009721
N/A
0.471DataRank · unranked
11 citations

Alan D. Hutson, Mohammadhadi Khorrami, Vanessa D. Jönsson, Spencer R. Rosario, Jill S. Barnholtz‐Sloan +21 more

Comprehensive Assessment of Somatic Copy Number Variation Calling Using Next-Generation Sequencing Data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.18.431906
N/A
0.360DataRank · unranked
10 citations

Fayaz Seifuddin, Cu Nguyen, Zhaowei Yang, Wanqiu Chen, Chunhua Yan +6 more

A benchmarking study of copy number variation inference methods using single-cell RNA-sequencing data

Precision Clinical Medicine(2025)10.1093/pcmedi/pbaf011
N/A
0.312DataRank · unranked
7 citations

Li Tai Fang, Zhong Chen, Wanqiu Chen, Hongjin Wu, Bin Zhu +11 more

Proteogenomic characterization of invasive breast tumors in young women

npj Breast Cancer(2025)10.1038/s41523-025-00793-0
N/A
0.269DataRank · unranked
5 citations

Jianfang Liu, Anthony R. Soltis, Nicholas W. Bateman, Qingrong Chen, Lori A. Sturtz +70 more

TRAIL-induced cytokine production via NFKB2 pathway promotes neutrophil chemotaxis and immune suppression in triple negative breast cancers

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.19.604341
N/A
0.208DataRank · unranked
3 citations

Yoshimi Endo Greer, Alexei Lobanov, Lisa A. Ridnour, Renee N. Donahue, Yeap Ng +11 more

The ESCRT protein CHMP5 promotes T cell leukemia by enabling BRD4-p300-dependent transcription

Nature Communications(2025)10.1038/s41467-025-59504-9
N/A
0.165DataRank · unranked
2 citations

Shashikala Ratnayake, Qianzi Tang, Rui Wang, Sneha Ghosh Chaudhary, Devaiah N Ballachanda +8 more

Analysis of cancer cell line and tissue RNA sequencing data reveals an essential and dark matrisome

Matrix Biology Plus(2024)10.1016/j.mbplus.2024.100156
Top 78%
0.104DataRank
Top 78%1 citations

Yu Fan, Qingrong Chen, Daoud Meerzaman, William G. Stetler‐Stevenson, David Peeney +1 more

Glioblastoma survival is associated with distinct proteomic alteration signatures post chemoirradiation in a large-scale proteomic panel

Frontiers in Oncology(2023)10.3389/fonc.2023.1127645
N/A
0DataRank · unranked
11 citations

Michael Sierk, Trinh Nguyen, Qingrong Chen, Chunhua Yan, Ying Hu +9 more

Abundant binary promoter switches in lineage-determining transcription factors indicate a digital component of cell fate determination

Cell Reports(2023)10.1016/j.celrep.2023.113454
N/A
0DataRank · unranked
4 citations

Md Ahasanur Rahman, Michael Ruesch, Caprice D. Eisele, Erik Anderson, Paul W. Wright +9 more

Multi-omics Pathways Workflow (MOPAW): An Automated Multi-omics Workflow on the Cancer Genomics Cloud

Cancer Informatics(2023)10.1177/11769351231180992
N/A
0DataRank · unranked
2 citations

Xiaopeng Bian, David A. Roberson, Rakesh Khanna, Qingrong Chen, Chunhua Yan +4 more

Data from Credentialing a Preclinical Mouse Model of Alveolar Rhabdomyosarcoma

(2023)10.1158/0008-5472.c.6499367.v1
N/A
0DataRank · unranked
0 citations

Qingrong Chen, Lei Zhang, Amanda T. McCleish, A. Y. Rodriguez, Min Jung Cho +15 more

Supplementary Table S2 from Mitochondrial Matrix Protease ClpP Agonists Inhibit Cancer Stem Cell Function in Breast Cancer Cells by Disrupting Mitochondrial Homeostasis

(2023)10.1158/2767-9764.22545575
Top 100%
0DataRank
Top 100%0 citations

Lídia Hernandez, Emily M.J. Fennell, Manjari Kundu, Donna Voeller, Raj Chari +12 more

Phosphorylation by JNK switches BRD4 functions

Molecular Cell(2024)10.1016/j.molcel.2024.09.030
N/A
0DataRank · unranked
22 citations

Amit Kumar Singh, Jie Mu, Qingrong Chen, Daoud Meerzaman, Dinah S. Singer +1 more

Nitric oxide inhibits ten-eleven translocation DNA demethylases to regulate 5mC and 5hmC across the genome

Research Square(2024)10.21203/rs.3.rs-4131804/v1
N/A
0DataRank · unranked
3 citations

Marianne B. Palczewski, Hannah Petraitis Kuschman, Brian M. Hoffman, Hao Yang, Sharon A. Glynn +15 more

The ESCRT protein CHMP5 promotes T cell leukemia by controlling BRD4-p300-dependent transcription

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.29.577409
N/A
0DataRank · unranked
0 citations

Shashikala Ratnayake, Qianzi Tang, Rui Wang, Ballachanda N. Devaiah, Lan Zhou +5 more

TRAIL induces cytokine production via the NFkB2 pathway promoting neutrophil chemotaxis and neutrophil-mediated immune-suppression in triple negative breast cancer cells

Cancer Letters(2025)10.1016/j.canlet.2025.217692
N/A
0DataRank · unranked
10 citations

Yoshimi Endo Greer, Alexei Lobanov, Lisa A. Ridnour, Renee N. Donahue, Yeap Ng +12 more

Nitric oxide inhibits ten-eleven translocation DNA demethylases to regulate 5mC and 5hmC across the genome

Nature Communications(2025)10.1038/s41467-025-56928-1
N/A
0DataRank · unranked
12 citations

Hannah Petraitis Kuschman, Brian M. Hoffman, Venkatesan Kathiresan, Hao Yang, Sharon A. Glynn +16 more

A simple liquid 3D cell culture paradigm models oxidative mitochondrial metabolism of epithelial breast cancer cells with relevance for lung metastases

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.24.671623
N/A
0DataRank · unranked
0 citations

Melissa R. Mikolaj, Jonathan M. Weiss, Ronald J. Holewinski, Yu Fan, Xia Xu +13 more

Context-sensitive word frequency: A context constructivist account of contextual diversity and word frequency effects

˜The œPsychology of learning and motivation/˜The œpsychology of learning and motivation(2025)10.1016/bs.plm.2025.07.004
N/A
0DataRank · unranked
0 citations

Shaorong Yan, Francis Mollica, Qingrong Chen, Michael K. Tanenhaus

Oncopacket: integration of cancer research data using GA4GH phenopackets

Bioinformatics(2025)10.1093/bioinformatics/btaf546
N/A
0DataRank · unranked
0 citations

Daniel Danis, Sagar Patil, Nobal Kishor, Rajdeep Mondal, Abhishek Jha +7 more

The Molecular Epidemiology and Clinical Phylogenetics of Rhinoviruses among Paediatric Cases in Sydney, Australia.

(2020)10.22541/au.160614561.14239652/v1
N/A
0DataRank · unranked
0 citations

Qingrong Chen, Matthew Scotch, C. Raina MacIntyre, Dominic E. Dwyer, Jen Kok +1 more

Epidermal progenitors suppress GRHL3-mediated differentiation through intronic polyadenylation promoted by CPSF-HNRNPA3 collaboration

Nature Communications(2021)10.1038/s41467-020-20674-3
N/A
0DataRank · unranked
29 citations

Sarah M. Lloyd, Junghun Kweon, Giovanni M. Gamalong, Xiaomin Bao, Qingrong Chen

Butanol Purified Food Allergy Herbal Formula-2 Has an Immunomodulating Effect ex-vivo in Pediatric Crohn's Disease Subjects

Frontiers in Medicine(2021)10.3389/fmed.2021.782859
N/A
0DataRank · unranked
2 citations

Joanne Lai, Ying Song, Nan Yang, Sacha Gnjatic, Virginia Gillespie +9 more

gcMECM: graph clustering of mutual exclusivity of cancer mutations

BMC Bioinformatics(2021)10.1186/s12859-021-04505-w
N/A
0DataRank · unranked
2 citations

Chunhua Yan, Qingrong Chen, Daoud Meerzaman, Ying Hu

Molecular characterization of the highest risk adult patients with acute myeloid leukemia (AML) through multi-omics clustering

Research Square(2021)10.21203/rs.3.rs-138491/v1
N/A
0DataRank · unranked
0 citations

John Pepper, Cu Nguyen, Fan Yu, Ying Hu, Qingrong Chen +3 more

Mitochondrial Matrix Protease ClpP Agonists Inhibit Cancer Stem Cell Function in Breast Cancer Cells by Disrupting Mitochondrial Homeostasis

Cancer Research Communications(2022)10.1158/2767-9764.crc-22-0142
N/A
0DataRank · unranked
31 citations

Lídia Hernandez, Emily M.J. Fennell, Manjari Kundu, Donna Voeller, Raj Chari +12 more

Flotillin-2 regulates epidermal growth factor receptor activation, degradation by Cbl-mediated ubiquitination, and cancer growth

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.102766
N/A
0DataRank · unranked
8 citations

Mariya Liyasova, Soumya Korrapati, Xu Zhang, Shashikala Ratnayake, Qingrong Chen +9 more

Engineering human Mucosal Associated Invariant T (MAIT) cells with chimeric antigen receptors for cancer immunotherapy 1

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.28.501764
N/A
0DataRank · unranked
2 citations

Ece Karhan, Lina Kozhaya, Lindsey Placek, Qingrong Chen, Mesut Yiğit +2 more

Modulation of glucose metabolism by 2-Deoxy-D-Glucose (2DG) promotes IL-17 producing human T cell subsets

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.13.484135
N/A
0DataRank · unranked
0 citations

Lina Kozhaya, Chuxi Wang, Lindsey Placek, Ece Karhan, Derya Unutmaz +1 more

Evidence for the digital programming of cellular differentiation: characterization of binary switches in lineage-determining transcription factors

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.22.497234
N/A
0DataRank · unranked
0 citations

Md Ahasanur Rahman, Paul W. Wright, Jennie J. Cao, Shashikala Ratnayake, Qingrong Chen +5 more

Cohesin regulates alternative splicing

Science Advances(2023)10.1126/sciadv.ade3876
N/A
0DataRank · unranked
25 citations

Qingrong Chen, Cu Nguyen, Daoud Meerzaman, Dinah S. Singer, Amit Kumar Singh