🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Anna Kreshuk

European Bioinformatics Institute

ORCID: 0000-0003-1334-6388

Also affiliated with European Molecular Biology Organization, European Molecular Biology Laboratory, European Molecular Biology Laboratory

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile
0.395Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A spatiotemporal atlas of mouse gastrulation and early organogenesis to explore axial patterning and project in vitro models onto in vivo space

Cell Reports(2025)10.1016/j.celrep.2025.116047
Top 46%
0.395DataRank
Top 46%8 citations

Tim Lohoff, Noushin Koulena, Nico Pierson, Constantin Pape, Farhan Ameen +11 more

Papers

Driven by 14 papers — median percentile 54. Top paper: “Metrics reloaded: recommendations for image analysis validation”.

Metrics reloaded: recommendations for image analysis validation

Nature Methods(2024)10.1038/s41592-023-02151-z
N/A
9.2DataRank · unranked
411 citations

Annika Reinke, Patrick Godau, Minu D. Tizabi, Florian Buettner, Evangelia Christodoulou +68 more

Developing open-source software for bioimage analysis: opportunities and challenges

F1000Research(2021)10.12688/f1000research.52531.1
N/A
1.3DataRank · unranked
37 citations

Anne E. Carpenter, Kevin W. Eliceiri, Anna Kreshuk, Peter Bankhead, Robert Haase +1 more

How to build the virtual cell with artificial intelligence: Priorities and opportunities

Cell(2024)10.1016/j.cell.2024.11.015
N/A
0.861DataRank · unranked
310 citations

Yusuf Roohani, Yanay Rosen, Ankit Gupta, Xikun Zhang, Marcel Roed +37 more

Volume electron microscopy

Nature Reviews Methods Primers(2022)10.1038/s43586-022-00131-9
N/A
0.822DataRank · unranked
239 citations

Christel Genoud, Anna Kreshuk, Kimberly Meechan, Kristina D. Micheva, Kedar Narayan +9 more

Profiling cellular diversity in sponges informs animal cell type and nervous system evolution

Science(2021)10.1126/science.abj2949
N/A
0.821DataRank · unranked
238 citations

Klaske J. Schippers, Michael Nickel, Giulia Mizzon, Andrea B. Kohn, Constantin Pape +32 more

Understanding metric-related pitfalls in image analysis validation

Nature Methods(2024)10.1038/s41592-023-02150-0
N/A
0.783DataRank · unranked
184 citations

Minu D. Tizabi, Michael Baumgartner, Matthias Eisenmann, Doreen Heckmann-Nötzel, Ali Emre Kavur +65 more

Metrics reloaded: Recommendations for image analysis validation

arXiv (Cornell University)(2022)10.48550/arxiv.2206.01653
N/A
0.621DataRank · unranked
62 citations

Annika Reinke, Patrick Godau, Minu D. Tizabi, Florian Buettner, Evangelia Christodoulou +69 more

The crucial role of bioimage analysts in scientific research and publication

Journal of Cell Science(2024)10.1242/jcs.262322
N/A
0.425DataRank · unranked
16 citations

Peter Bankhead, Rocco D’Antuono, Elnaz Fazeli, Julia Fernández-Rodrı́guez, Caterina Fuster-Barceló +28 more

A spatiotemporal atlas of mouse gastrulation and early organogenesis to explore axial patterning and project in vitro models onto in vivo space

Cell Reports(2025)10.1016/j.celrep.2025.116047
Top 46%
0.395DataRank
Top 46%8 citations

Tim Lohoff, Noushin Koulena, Nico Pierson, Constantin Pape, Farhan Ameen +11 more

Enabling Global Image Data Sharing in the Life Sciences

arXiv (Cornell University)(2024)10.48550/arxiv.2401.13023
N/A
0.282DataRank · unranked
5 citations

Sreenivas Bhattiprolu, Boerner, Katy, Beth A. Cimini, Lucy Collinson, Jan Ellenberg +18 more

A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context

10.1101/2024.02.19.580954
N/A
0.208DataRank · unranked
3 citations

Tejasvinee Atul Mody, Qin Yu, Adrian Wolny, Lorenzo Cerrone, Soeren Strauss +6 more

MIFA: Metadata, Incentives, Formats, and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis

arXiv (Cornell University)(2023)10.48550/arxiv.2311.10443
N/A
0.104DataRank · unranked
1 citations

Florian Jug, Aastha Mathur, Josh Moore, Arrate Muñoz‐Barrutia, Liviu Anita +22 more

Spherical harmonics texture extraction for versatile analysis of biological objects

PLoS Computational Biology(2025)10.1371/journal.pcbi.1012349
N/A
0DataRank · unranked
1 citations

Josiah B. Passmore, Noa Ottilie Borst, Dominik Kutra, Wilco Nijenhuis, Timothy Fuqua +5 more

Deep learning enables fast and dense single-molecule localization with high accuracy

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.26.355164
N/A
0DataRank · unranked
34 citations

Lucas-Raphael Müller, Ulf Matti, Christopher J. Obara, Wesley R. Legant, Anna Kreshuk +4 more