Sean C. Bendall

Parker Institute for Cancer Immunotherapy

Also affiliated with Stanford Medicine, Stanford University

Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 58 papers. Top paper: “Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma”.

Transition to invasive breast cancer is associated with progressive changes in the structure and composition of tumor stroma

Cell(2022)10.1016/j.cell.2021.12.023

N/A

7.6DataRank · unranked

389 citations

David R. Glass, Inna Averbukh, Candace C. Liu, Alex Baranski, Adam Kagel +21 more

The immunoregulatory landscape of human tuberculosis granulomas

Nature Immunology(2022)10.1038/s41590-021-01121-x

N/A

5.4DataRank · unranked

313 citations

Michele Donato, Leeat Keren, Zhenghao Chen, Alea Delmastro, Megan B. Fitzpatrick +23 more

Immune determinants of CAR-T cell expansion in solid tumor patients receiving GD2 CAR-T cell therapy

Cancer Cell(2023)10.1016/j.ccell.2023.11.011

N/A

2.4DataRank · unranked

110 citations

Tara Murty, Ahmad Alimadadi, Cristina F. Contreras, Caroline Duault, Priyanka B. Subrahmanyam +39 more

Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP)

Nature Cell Biology(2023)10.1038/s41556-023-01194-w

N/A

2.3DataRank · unranked

175 citations

Liming Pei, Jeffrey M. Spraggins, Michael Angelo, James P. Carson, Nils Gehlenborg +95 more

Autophagy counters inflammation-driven glycolytic impairment in aging hematopoietic stem cells

Cell stem cell(2024)10.1016/j.stem.2024.04.020

N/A

1.1DataRank · unranked

57 citations

Melissa Proven, Fernando J. Calero‐Nieto, Xiaonan Wang, Carl A. Mitchell, Felix J. Hartmann +11 more

An Integrated Multi-omic Single-Cell Atlas of Human B Cell Identity

Immunity(2020)10.1016/j.immuni.2020.06.013

N/A

0.838DataRank · unranked

265 citations

Albert G. Tsai, John Paul Oliveria, Felix J. Hartmann, Samuel C. Kimmey, Ariel A. Calderon +6 more

Post-infusion CAR TReg cells identify patients resistant to CD19-CAR therapy

Nature Medicine(2022)10.1038/s41591-022-01960-7

N/A

0.828DataRank · unranked

248 citations

Jay Y. Spiegel, Bita Sahaf, Meena Malipatlolla, Zachary Ehlinger, Sreevidya Kurra +25 more

Human IL-10-producing B cells have diverse states that are induced from multiple B cell subsets

Cell Reports(2022)10.1016/j.celrep.2022.110728

N/A

0.691DataRank · unranked

99 citations

David R. Glass, John-Paul Oliveria, Bérénice Mbiribindi, Carlos O. Esquivel, Sheri M. Krams +3 more

Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions

Nature Machine Intelligence(2020)10.1038/s42256-020-00232-8

N/A

0.670DataRank · unranked

86 citations

Amy S. Tsai, Natalie Stanley, Martin Becker, Mohammad Sajjad Ghaemi, David R. McIlwain +26 more

NK-like CD8 + γδ T cells are expanded in persistent Mycobacterium tuberculosis infection

Science Immunology(2023)10.1126/sciimmunol.ade3525

N/A

0.617DataRank · unranked

60 citations

John R. Valainis, Megha Dubey, Lotta von Boehmer, Elsa Solà, Julie Wilhelmy +12 more

Expanded vacuum-stable gels for multiplexed high-resolution spatial histopathology

Nature Communications(2023)10.1038/s41467-023-39616-w

N/A

0.494DataRank · unranked

26 citations

Bokai Zhu, John-Paul Oliveria, Bryan J. Cannon, Dorien Feyaerts, Marc Bossé +15 more

High-dimensional profiling of pediatric immune responses to solid organ transplantation

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101147

N/A

0.423DataRank · unranked

10 citations

Meelad Amouzgar, James T. Harden, Mary Gay Lapasaran, Amber W. Trickey, Brian Armstrong +7 more

A multi-institutional phase 1 clinical trial exploring upfront multimodal standard of care and combined immunotherapies for newly diagnosed glioblastoma

Neuro-Oncology(2025)10.1093/neuonc/noaf079

N/A

0.394DataRank · unranked

9 citations

Andrea G. Manzanera, Caroline Duault, Edgar Gonzalez‐Kozlova, Lenika Lopez, Stuart A. Grossman +50 more

Systems biology approaches to unravel lymphocyte subsets and function

Current Opinion in Immunology(2023)10.1016/j.coi.2023.102323

N/A

0.312DataRank · unranked

7 citations

William J. Greenleaf, Sean C. Bendall, YeEun Kim

Single-cell Spatial Proteomic Imaging for Human Neuropathology

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.02.482730

N/A

0.312DataRank · unranked

7 citations

Bryan J. Cannon, Dmitry Tebaykin, Marc Bossé, Alex Baranski, John Paul Oliveria +14 more

Automated classification of cellular expression in multiplexed imaging data with Nimbus

Nature Methods(2025)10.1038/s41592-025-02826-9

N/A

0.312DataRank · unranked

7 citations

Noah F. Greenwald, Jolene S. Ranek, Potchara Boonrat, Cameron Walker, Jannik Franzen +16 more

Mass‐tag barcoding for multiplexed analysis of human synaptosomes and other anuclear events

Cytometry Part A(2021)10.1002/cyto.a.24340

N/A

0.312DataRank · unranked

7 citations

Rosemary Fernandez, Kathleen S. Montine, Edward Fox, Dunja Mrdjen, Nadia Postupna +4 more

Unravelling human hematopoietic progenitor cell diversity through association with intrinsic regulatory factors

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.30.555623

N/A

0.165DataRank · unranked

2 citations

David R. Glass, Luciene Borges, Reema Baskar, Warren D. Reynolds, Daniel Ho +6 more

CIMAC-CIDC CyTOF harmonization.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.15_suppl.e15242

N/A

0.104DataRank · unranked

1 citations

Bita Sahaf, Melanie Davila, Nicholas F. Fernandez, Emily M. McWilliams, Karen Millerchip +15 more

Human IL-10-producing B cells have diverse states induced from multiple B cell subsets

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.01.458645

N/A

0.104DataRank · unranked

1 citations

David R. Glass, John Paul Oliveria, Bérénice Mbiribindi, Carlos O. Esquivel, Sheri M. Krams +3 more

Magnitude and kinetics of the human immune cell response associated with severe dengue progression by single-cell proteomics

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.21.508901

N/A

0DataRank · unranked

3 citations

David R. Glass, Verónica Durán, Olga Lucía Agudelo Rojas, Ana María Sanz, Monika Consuegra +15 more

397 Deep myeloid cell profiling provides new insights into modulators of CAR T cell expansion in patients with solid tumor malignancies

Regular and Young Investigator Award Abstracts(2022)10.1136/jitc-2022-sitc2022.0397

N/A

0DataRank · unranked

2 citations

Sneha Ramakrishna, Tara Murty, Cristina Contreras, Ahmad Alimadadi, Norma C. Gutiérrez +17 more

High-dimensional profiling of pediatric immune responses to solid organ transplantation

medRxiv(2022)10.1101/2022.08.17.22278895

N/A

0DataRank · unranked

1 citations

Meelad Amouzgar, James T. Harden, Mary Gay Lapasaran, Amber W. Trickey, Brian Armstrong +7 more

362 Defining T cell exhaustion and memory correlates of GD2 CAR T cell expansion in pediatric patients with solid tumor malignancies

Regular and Young Investigator Award Abstracts(2022)10.1136/jitc-2022-sitc2022.0362

N/A

0DataRank · unranked

0 citations

Sneha Ramakrishna, Sabina Kaczanowska, Cristina Contreras, Caroline Duault, Priyanka Balasubrahmanyam +14 more

Loss-of-function mutations in Dnmt3a and Tet2 lead to accelerated atherosclerosis and concordant macrophage phenotypes

Nature Cardiovascular Research(2023)10.1038/s44161-023-00326-7

N/A

0DataRank · unranked

63 citations

Jayakrishnan Gopakumar, Alexander J. Silver, Daniel Nachun, Herra Ahmad, Marie McConkey +22 more

Immuno-metabolic dendritic cell vaccine signatures associate with overall survival in vaccinated melanoma patients

Nature Communications(2023)10.1038/s41467-023-42881-4

N/A

0DataRank · unranked

34 citations

Paul V. Munson, Deena M. Maurer, Felix J. Hartmann, Sean C. Bendall, Rafael J. Argüello +2 more

Magnitude and kinetics of the human immune cell response associated with severe dengue progression by single-cell proteomics

Science Advances(2023)10.1126/sciadv.ade7702

N/A

0DataRank · unranked

28 citations

David R. Glass, Verónica Durán, Olga Lucía Agudelo Rojas, Ana María Sanz, Monika Consuegra +15 more

Phenotyping EMT and MET cellular states in lung cancer patient liquid biopsies at a personalized level using mass cytometry

Scientific Reports(2023)10.1038/s41598-023-46458-5

N/A

0DataRank · unranked

11 citations

Danny Pancirer, Jordan S. Preiss, Jalen Benson, Winston Trope, Joseph B. Shrager +6 more

Cross-species comparative analysis of single presynapses

Scientific Reports(2023)10.1038/s41598-023-40683-8

N/A

0DataRank · unranked

4 citations

Chandresh R. Gajera, Thanaphong Phongpreecha, Amalia Perna, Syed Bukhari, Martin Becker +16 more

Spatial proteomics reveals human microglial states shaped by anatomy and neuropathology

Research Square(2023)10.21203/rs.3.rs-2987263/v1

N/A

0DataRank · unranked

19 citations

Meelad Amouzgar, Bryan J. Cannon, Candace Liu, Angie Spence, Erin McCaffrey +19 more

Data from The Interaction of SWI/SNF with the Ribosome Regulates Translation and Confers Sensitivity to Translation Pathway Inhibitors in Cancers with Complex Perturbations

(2023)10.1158/0008-5472.c.6514095.v1

N/A

0DataRank · unranked

0 citations

Samuel C. Kimmey, Christopher M. Weber, Grace M. Allard, Aihui Wang, Nam Q. Bui +5 more

Terminal deoxynucleotidyl transferase and CD84 identify human multi-potent lymphoid progenitors

Nature Communications(2024)10.1038/s41467-024-49883-w

N/A

0DataRank · unranked

7 citations

Ariel A. Calderon, Patricia Favaro, David R. Glass, Albert G. Tsai, Daniel Ho +4 more

Multi-omic landscape of human gliomas from diagnosis to treatment and recurrence

Cancer Cell(2025)10.1016/j.ccell.2025.11.006

N/A

0DataRank · unranked

19 citations

Benjamin Oberlton, Mikaela Ribi, Ke Xuan Leow, Jolene S. Ranek, Inna Averbukh +35 more

Quantification of intrinsic regulatory factors refines human hematopoietic progenitor definitions and reveals early erythroid lineage priming

Cell Reports(2025)10.1016/j.celrep.2025.115913

N/A

0DataRank · unranked

2 citations

David R. Glass, Luciene Borges, Reema Baskar, Avery J. Lam, Warren D. Reynolds +8 more

A deep single cell mass cytometry approach to capture canonical and noncanonical cell cycle states

Nature Communications(2025)10.1038/s41467-025-63883-4

N/A

0DataRank · unranked

1 citations

Patricia Favaro, Daniel Ho, Trevor Bruce, Sean C. Bendall, Meelad Amouzgar

CellFuse Enables Multi-modal Integration of Single-cell and Spatial Proteomics data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.23.665976

N/A

0DataRank · unranked

1 citations

Zinaida Good, Sricharan Reddy Varra, Sean C. Bendall, Kara L. Davis, Abhishek Koladiya

Fast-ATACseq protocol – Stanford Bone Marrow TMC v1

(2025)10.17504/protocols.io.3byl464b8go5/v1

N/A

0DataRank · unranked

0 citations

Warren Reynolds, Reema Baskar, Sean C. Bendall, Patricia Favaro

Single-cell metabolic profiling of human cytotoxic T cells

Nature Biotechnology(2020)10.1038/s41587-020-0651-8

N/A

0DataRank · unranked

327 citations

Dunja Mrdjen, Erin McCaffrey, David R. Glass, Noah F. Greenwald, Anusha Bharadwaj +10 more

Epi Multiome ATAC + Gene Expression – Stanford Bone Marrow TMC v1

(2025)10.17504/protocols.io.j8nlkyjw5g5r/v1

N/A

0DataRank · unranked

0 citations

Jumana Afaghani, Sean C. Bendall, Patricia Favaro

Multiplexed single-cell morphometry for hematopathology diagnostics

Nature Medicine(2020)10.1038/s41591-020-0783-x

N/A

0DataRank · unranked

46 citations

David R. Glass, Marisa M. Juntilla, Felix J. Hartmann, Jean Oak, Sebastian Fernandez‐Pol +3 more

Mass Cytometry Phenotyping of Human Granulocytes Reveals Novel Basophil Functional Heterogeneity

iScience(2020)10.1016/j.isci.2020.101724

N/A

0DataRank · unranked

31 citations

John Paul Oliveria, Dmitry Tebaykin, Geoffrey T. Ivison, Kaori Mukai, Mindy Tsai +6 more

Multiplexed Single-cell Metabolic Profiles Organize the Spectrum of Cytotoxic Human T Cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.17.909796

N/A

0DataRank · unranked

8 citations

Dunja Mrdjen, Erin McCaffrey, David R. Glass, Noah F. Greenwald, Anusha Bharadwaj +6 more

Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learning

Nature Biotechnology(2021)10.1038/s41587-021-01094-0

N/A

0DataRank · unranked

925 citations

Geneva Miller, Erick Moen, Alex Kong, Adam Kagel, Thomas Dougherty +24 more

Multiplexed imaging reveals an IFN-γ-driven inflammatory state in nivolumab-associated gastritis

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100419

N/A

0DataRank · unranked

18 citations

Candace C. Liu, Erin McCaffrey, Rashmi Kumar, Theodore S. Nowicki, David W. Dawson +6 more

Multiplexed Ion Beam Imaging Readout of Single-Cell Immunoblotting

Analytical Chemistry(2021)10.1021/acs.analchem.1c01050

N/A

0DataRank · unranked

12 citations

Marc Bossé, Sean C. Bendall, Michael Angelo, Amy E. Herr, Gabriela Lomeli

Integrating transcription factor abundance with chromatin accessibility in human erythroid lineage commitment

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.23.436609

N/A

0DataRank · unranked

5 citations

Amy F. Chen, Patricia Favaro, Warren D. Reynolds, Fabian Mueller, Luciene Borges +6 more

Gestationally-Dependent Immune Organization at the Maternal-Fetal Interface

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.25.449807

N/A

0DataRank · unranked

4 citations

Nora Vivanco Gonzalez, Katherine A. Plummer, Olivia Mitchel, Harleen Kaur, Moises Rivera +4 more

Single-synapse analyses of Alzheimer’s disease implicate pathologic tau, DJ1, CD47, and ApoE

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.14.448240

N/A

0DataRank · unranked

3 citations

Chandresh R. Gajera, Candace C. Liu, Kausalia Vijayaragavan, Alan L. Chang, Martin Becker +18 more

The role of antigen recognition in the γδ T cell response at the controlled stage of M. tuberculosis infection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.14.460324

N/A

0DataRank · unranked

2 citations

John R. Valainis, Oliver Kask, Mané Ohanyan, Meng Sun, Huang Huang +10 more

Distinct metabolic states guide maturation of inflammatory and tolerogenic dendritic cells

Nature Communications(2022)10.1038/s41467-022-32849-1

N/A

0DataRank · unranked

119 citations

Paul V. Munson, Felix J. Hartmann, Alexis J. Combes, Philippe Pierre, Matthew F. Krummel +4 more

Reproducible, high-dimensional imaging in archival human tissue by multiplexed ion beam imaging by time-of-flight (MIBI-TOF)

Laboratory Investigation(2022)10.1038/s41374-022-00778-8

N/A

0DataRank · unranked

51 citations

Marc Bossé, Alex Kong, Adam Kagel, Robert J. Kinders, Stephen M. Hewitt +6 more

Single-cell spatial proteomic imaging for human neuropathology

Acta Neuropathologica Communications(2022)10.1186/s40478-022-01465-x

N/A

0DataRank · unranked

36 citations

Bryan J. Cannon, Dmitry Tebaykin, Marc Bossé, Alex Baranski, John Paul Oliveria +16 more

Gestationally dependent immune organization at the maternal-fetal interface

Cell Reports(2022)10.1016/j.celrep.2022.111651

N/A

0DataRank · unranked

31 citations

Nora Vivanco Gonzalez, Katherine A. Plummer, Olivia Mitchel, Harleen Kaur, Moises Rivera +7 more

Supervised dimensionality reduction for exploration of single-cell data by HSS-LDA

Patterns(2022)10.1016/j.patter.2022.100536

N/A

0DataRank · unranked

29 citations

David R. Glass, Reema Baskar, Inna Averbukh, Samuel C. Kimmey, Albert G. Tsai +3 more

Natural Killer Cell Receptors and Ligands Are Associated With Markers of HIV-1 Persistence in Chronically Infected ART Suppressed Patients

Frontiers in Cellular and Infection Microbiology(2022)10.3389/fcimb.2022.757846

N/A

0DataRank · unranked

14 citations

Elena Vendrame, Giovanny J. Martínez-Colón, Thanmayi Ranganath, Rosemary Vergara, Nancy Q. Zhao +14 more

The Interaction of SWI/SNF with the Ribosome Regulates Translation and Confers Sensitivity to Translation Pathway Inhibitors in Cancers with Complex Perturbations

Cancer Research(2022)10.1158/0008-5472.can-21-1360

N/A

0DataRank · unranked

12 citations

Samuel C. Kimmey, Christopher M. Weber, Grace M. Allard, Aihui Wang, Nam Q. Bui +5 more

Variation of Immune Cell Responses in Humans Reveals Sex-Specific Coordinated Signaling Across Cell Types

Frontiers in Immunology(2022)10.3389/fimmu.2022.867016

N/A

0DataRank · unranked

7 citations

Zachary B. Bjornson-Hooper, Deepthi Madhireddy, Karen Sachs, Han Chen, David R. McIlwain +4 more

Author Correction: The immunoregulatory landscape of human tuberculosis granulomas

Nature Immunology(2022)10.1038/s41590-022-01178-2

N/A

0DataRank · unranked

6 citations

Michele Donato, Leeat Keren, Zhenghao Chen, Alea Delmastro, Megan B. Fitzpatrick +23 more