Richard H. Scheuermann

Also affiliated with J. Craig Venter Institute, United States National Library of Medicine, University of Houston

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

24.5Author DataRank

Indexed papers

16in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 16 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Ontology-driven indexing of public datasets for translational bioinformatics

BMC Bioinformatics(2009)10.1186/1471-2105-10-s2-s1

Top 2%

8.5DataRank

Top 2%121 citations

Clement Jonquet, Annie P Chiang, Atul Janardhan Butte, Rong Chen, Mark A. Musen +2 more

Papers

Driven by 90 papers — median percentile 46. Top paper: “Negligible impact of SARS-CoV-2 variants on CD4 + and CD8 + T cell reactivity in COVID-19 exposed donors and vaccinees”.

Negligible impact of SARS-CoV-2 variants on CD4 + and CD8 + T cell reactivity in COVID-19 exposed donors and vaccinees

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.27.433180

N/A

10.3DataRank · unranked

156 citations

John Sidney, Nils Methot, Yun Zhang, Jennifer M. Dan, Benjamin Goodwin +13 more

Ontology-driven indexing of public datasets for translational bioinformatics

BMC Bioinformatics(2009)10.1186/1471-2105-10-s2-s1

Top 2%

8.5DataRank

Top 2%121 citations

Clement Jonquet, Annie P Chiang, Atul Janardhan Butte, Rong Chen, Mark A. Musen +2 more

The Ontology for Biomedical Investigations

PLOS ONE(2016)10.1371/journal.pone.0154556

Top 3%

6.8DataRank

Top 3%390 citations

Mathias Brochhausen, Bill Bug, Marcus C. Chibucos, Kevin Clancy, Mélanie Courtot +40 more

Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR

Nucleic Acids Research(2022)10.1093/nar/gkac1003

Top 4%

5.7DataRank

Top 4%1253 citations

Rida Assaf, Thomas Brettin, Neal Conrad, Clark Cucinell, James J. Davis +35 more

Defining the risk of SARS-CoV-2 variants on immune protection

Nature(2022)10.1038/s41586-022-04690-5

N/A

4.9DataRank · unranked

185 citations

Elodie Ghedin, Matthew B. Frieman, Florian Krammer, Alba Grifoni, Arghavan Alisoltani +95 more

Selected papers from the 13th Annual Bio-Ontologies Special Interest Group Meeting

Journal of Biomedical Semantics(2011)10.1186/2041-1480-2-s2-i1

N/A

3.6DataRank · unranked

59 citations

Susie M Stephens, Richard H. Scheuermann, Larisa Soldatova, Susanna‐Assunta Sansone

HyQue: evaluating hypotheses using Semantic Web technologies

Journal of Biomedical Semantics(2011)10.1186/2041-1480-2-s2-s3

N/A

2.4DataRank · unranked

42 citations

Michel J. Dumontier, Richard H. Scheuermann, Alison Callahan

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.31.016972

N/A

2.4DataRank · unranked

90 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +99 more

Feasibility of Prioritizing Drug–Drug-Event Associations Found in Electronic Health Records

Drug Safety(2015)10.1007/s40264-015-0352-2

N/A

2.2DataRank · unranked

48 citations

Alison Callahan, Rainer Winnenburg, Howard R. Strasberg, Aurel Cami, Ben Y. Reis +5 more

Integration and publication of heterogeneous text-mined relationships on the Semantic Web

Journal of Biomedical Semantics(2011)10.1186/2041-1480-2-s2-s10

N/A

1.6DataRank · unranked

41 citations

Yael Garten, Michel J. Dumontier, Russ B. Altman, Mark A. Musen, Richard H. Scheuermann +1 more

Meeting Report: BioSharing at ISMB 2010

Standards in Genomic Sciences(2010)10.4056/sigs/1403501

N/A

1.6DataRank · unranked

21 citations

Edward F. DeLong, Peter Sterk, Iddo Friedberg, Pascale Gaudet, Susanna Lewis +22 more

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

Nature Biotechnology(2007)10.1038/nbt1346

N/A

1.2DataRank · unranked

2611 citations

Barry Smith, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug +14 more

Contextualising adverse events of special interest to characterise the baseline incidence rates in 24 million patients with COVID-19 across 26 databases: a multinational retrospective cohort study

eClinicalMedicine(2023)10.1016/j.eclinm.2023.101932

N/A

1.1DataRank · unranked

27 citations

Azza Shoaibi, Lana Yin Hui Lai, Clair Blacketer, Thamir Alshammari, Rupa Makadia +73 more

A Sequence Homology and Bioinformatic Approach Can Predict Candidate Targets for Immune Responses to SARS-CoV-2

Cell Host & Microbe(2020)10.1016/j.chom.2020.03.002

N/A

1.0DataRank · unranked

1079 citations

John Sidney, Yun Zhang, Richard H. Scheuermann, Bjoern Peters, Alessandro Sette +1 more

Comparative cellular analysis of motor cortex in human, marmoset and mouse

Nature(2021)10.1038/s41586-021-03465-8

N/A

1.0DataRank · unranked

818 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +101 more

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

Nature Biotechnology(2008)10.1038/nbt.1411

N/A

0.950DataRank · unranked

561 citations

Dawn Field, Jan Aerts, Rolf Apweiler, Michael Ashburner, On behalf of the MGED Society +63 more

Provenance-Centered Dataset of Drug-Drug Interactions

Lecture Notes in Computer Science(2015)10.1007/978-3-319-25010-6_18

Top 22%

0.938DataRank

Top 22%19 citations

Tobias Kuhn, Richard H. Scheuermann, Michel J. Dumontier, Juan M. Banda

Computationally translating molecular discoveries into tools for medicine: translational bioinformatics articles now featured inJAMIA

Journal of the American Medical Informatics Association(2011)10.1136/amiajnl-2011-000343

N/A

0.929DataRank · unranked

15 citations

Richard H. Scheuermann, Atul Janardhan Butte

SARS-CoV-2 reservoir in post-acute sequelae of COVID-19 (PASC)

Nature Immunology(2023)10.1038/s41590-023-01601-2

N/A

0.850DataRank · unranked

288 citations

Michael B. VanElzakker, Soo Aleman, Katie Bach, Brittany P. Boribong, Marcus Buggert +28 more

A guide to the BRAIN Initiative Cell Census Network data ecosystem

PLoS Biology(2023)10.1371/journal.pbio.3002133

Top 24%

0.845DataRank

Top 24%56 citations

Maryann E. Martone, Giorgio A. Ascoli, Jan G. Bjaalie, Hong‐Wei Dong, Satrajit S. Ghosh +95 more

Ethical and regulatory challenges of large language models in medicine

The Lancet Digital Health(2024)10.1016/s2589-7500(24)00061-x

N/A

0.832DataRank · unranked

255 citations

Shelley Yin-Hsi Chang, Wasswa William, Atul Janardhan Butte, Richard H. Scheuermann, Lita Sui Tjien Chew +7 more

Acute flaccid myelitis: cause, diagnosis, and management

The Lancet(2020)10.1016/s0140-6736(20)32723-9

N/A

0.781DataRank · unranked

182 citations

Kevin Messacar, Lina Benson, Riley Bove, Jessica L. Carpenter, Thomas O. Crawford +95 more

Transcriptomic evidence that von Economo neurons are regionally specialized extratelencephalic-projecting excitatory neurons

Nature Communications(2020)10.1038/s41467-020-14952-3

N/A

0.700DataRank · unranked

105 citations

Jeremy A. Miller, Mark Novotny, Brian E. Kalmbach, Jonathan T. Ting, Trygve E. Bakken +22 more

Cell type matching in single-cell RNA-sequencing data using FR-Match

Scientific Reports(2022)10.1038/s41598-022-14192-z

Top 29%

0.682DataRank

Top 29%15 citations

Brian D. Aevermann, Rohan Gala, Richard H. Scheuermann, Yun Zhang

Predicting the need for a reduced drug dose, at first prescription

Scientific Reports(2018)10.1038/s41598-018-33980-0

N/A

0.667DataRank · unranked

9 citations

Richard H. Scheuermann, Maxime Wack, Mohammad B. Chawki, Nicolas Jay, Michel J. Dumontier +1 more

Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2007295117

N/A

0.665DataRank · unranked

83 citations

Sergei L. Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne–Mieke Vandamme, Simon Dellicour +31 more

Candidate targets for immune responses to 2019-Novel Coronavirus (nCoV): sequence homology- and bioinformatic-based predictions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.12.946087

Top 31%

0.632DataRank

Top 31%8 citations

John Sidney, Renee Zhang, Richard H. Scheuermann, Bjoern Peters, Alessandro Sette +1 more

Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma

Nature Genetics(2023)10.1038/s41588-023-01551-3

N/A

0.631DataRank · unranked

66 citations

Jens Luebeck, Sunita Sridhar, Ivy Tsz-Lo Wong, Deobrat Dixit, Shanqing Wang +43 more

Guidelines for reporting single-cell RNA-seq experiments

Nature Biotechnology(2020)10.1038/s41587-020-00744-z

N/A

0.593DataRank · unranked

51 citations

Nancy George, Matthew Green, Parisa Nejad, Bruce J. Aronow, Silvie Korena Fexova +15 more

Integrated Single-Cell Atlases Reveal an Oral SARS-CoV-2 Infection and Transmission Axis

medRxiv(2020)10.1101/2020.10.26.20219089

N/A

0.584DataRank · unranked

48 citations

Paola Pérez, Takafumi Kato, Yu Mikami, Kenichi Okuda, Rodney C. Gilmore +44 more

Medical Ethics of Large Language Models in Medicine

NEJM AI(2024)10.1056/aira2400038

N/A

0.546DataRank · unranked

37 citations

Shelley Yin-Hsi Chang, Wasswa William, Atul Janardhan Butte, Richard H. Scheuermann, Lita Sui Tjien Chew +6 more

Overcoming the ontology enrichment bottleneck with Quick Term Templates

Applied Ontology(2011)10.3233/ao-2011-0086

N/A

0.489DataRank · unranked

25 citations

Patricia L. Whetzel, Daniel Schober, Jay Greenbaum, Mélanie Courtot, Ryan R. Brinkman +8 more

A system-view of Bordetella pertussis booster vaccine responses in adults primed with whole-cell versus acellular vaccine in infancy

JCI Insight(2021)10.1172/jci.insight.141023

N/A

0.470DataRank · unranked

22 citations

Ferran Soldevila, Mikhail Pomaznoy, Mariana Babor, Jason W. Bennett, Yuan Tian +12 more

Highly conserved Betacoronavirus sequences are broadly recognized by human T cells

Cell(2025)10.1016/j.cell.2025.07.015

N/A

0.466DataRank · unranked

11 citations

Christian M. Zmasek, Liliana Avalos, John Sidney, Raphael Trevizani, Elizabeth J. Phillips +7 more

Brain Data Standards - A method for building data-driven cell-type ontologies

Scientific Data(2023)10.1038/s41597-022-01886-2

N/A

0.457DataRank · unranked

20 citations

Hüseyin Kır, Brian D. Aevermann, Tom Gillespie, Nomi L. Harris, Michael Hawrylycz +15 more

Reference-based cell type matching of in situ image-based spatial transcriptomics data on primary visual cortex of mouse brain

Scientific Reports(2023)10.1038/s41598-023-36638-8

N/A

0.457DataRank · unranked

20 citations

Jeremy A. Miller, Jeongbin Park, Boudewijn P. F. Lelieveldt, Brian Long, Tamim Abdelaal +13 more

The landscape of extrachromosomal circular DNA in medulloblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.18.464907

N/A

0.396DataRank · unranked

13 citations

Jens Luebeck, Sameena Wani, Ashutosh Tiwari, Meghana S. Pagadala, Shanqing Wang +26 more

Standardization of assay representation in the Ontology for Biomedical Investigations

Database(2021)10.1093/database/baab040

N/A

0.360DataRank · unranked

10 citations

Jie Zheng, Rebecca Jackson, Damion Dooley, James A. Overton, Mark A. Miller +16 more

Selected papers from the 15th Annual Bio-Ontologies Special Interest Group Meeting

Journal of Biomedical Semantics(2013)10.1186/2041-1480-4-s1-i1

N/A

0.332DataRank · unranked

4 citations

Michel J. Dumontier, Richard H. Scheuermann, Larisa Soldatova, Susanna‐Assunta Sansone

Targets and cross-reactivity of human T cell recognition of Common Cold Coronaviruses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.04.522794

N/A

0.330DataRank · unranked

8 citations

Yun Zhang, Nils Methot, Tara M. Narowski, Elizabeth J. Phillips, S. Mallal +9 more

Author Correction: Comparative cellular analysis of motor cortex in human, marmoset and mouse

Nature(2022)10.1038/s41586-022-04562-y

N/A

0.317DataRank · unranked

5 citations

Nikolas L. Jorstad, Qiwen Hu, Blue B. Lake, Wei Tian, Brian E. Kalmbach +104 more

The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.26.513573

Top 54%

0.312DataRank

Top 54%7 citations

Maryann E. Martone, Patrick R. Hof, Ed S. Lein, Aviv Regev, Giorgio A. Ascoli +94 more

Integration and publication of heterogeneous text-mined relationships on the Semantic Web

HAL (Le Centre pour la Communication Scientifique Directe)(2022)10.6084/m9.figshare.c.6069838

N/A

0.269DataRank · unranked

5 citations

Yael Garten, Michel J. Dumontier, Russ B. Altman, Mark A. Musen, Richard H. Scheuermann +1 more

Unbiased analysis of peripheral blood mononuclear cells reveals CD4 T cell response to RSV matrix protein

Vaccine X(2020)10.1016/j.jvacx.2020.100065

N/A

0.241DataRank · unranked

4 citations

Qian Yu, Lauren Benoodt, David Roumanes, Xing Qiu, Nathan Laniewski +12 more

TEXT AND DATA MINING FOR BIOMEDICAL DISCOVERY- SESSION INTRODUCTION

Biocomputing 2014(2013)10.1142/9789814583220_0030

N/A

0.241DataRank · unranked

4 citations

Kevin Bretonnel Cohen, Casey S. Greene, Maricel G. Kann, Robert Leaman, Nigam Shah +4 more

Selected papers from the 12th annual Bio-Ontologies meeting

Journal of Biomedical Semantics(2010)10.1186/2041-1480-1-s1-i1

N/A

0.208DataRank · unranked

3 citations

Phillip Lord, Susie M Stephens, Richard H. Scheuermann, Larisa Soldatova, Susanna‐Assunta Sansone

US National Institutes of Health Prioritization of SARS-CoV-2 Variants

Emerging infectious diseases(2023)10.3201/eid2905.221646

N/A

0.208DataRank · unranked

3 citations

Arghavan Alisoltani, Debbie Bratt, Liel Cohen-Lavi, Bethany L. Dearlove, Christian Drosten +29 more

Special issue on bio-ontologies and phenotypes

Journal of Biomedical Semantics(2015)10.1186/s13326-015-0040-2

N/A

0.104DataRank · unranked

1 citations

Nigel Collier, Anika Oellrich, Tudor Groza, Karin Verspoor, Philippe Rocca-Serra +4 more

LIDDI - Provenance-Centered Dataset of Drug-Drug Interactions

Figshare(2015)10.6084/m9.figshare.1486478

Top 78%

0.104DataRank

Top 78%1 citations

Tobias Kuhn, Richard H. Scheuermann, Michel J. Dumontier, Juan M. Banda

Cochlear transcriptome analysis of an outbred mouse population (CFW)

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.15.528661

N/A

0DataRank · unranked

2 citations

Neil Tedeschi, Mark Novotny, Yuzuru Ninoyu, Eric Y. Du, Clara Draf +5 more

A cell-level discriminative neural network model for diagnosis of blood cancers

medRxiv(2023)10.1101/2023.02.07.23285606

N/A

0DataRank · unranked

2 citations

Jin Ye, Padhraic Smyth, Richard H. Scheuermann, Jack D. Bui, Huan‐You Wang +3 more

Author Correction: Brain Data Standards - A method for building data-driven cell-type ontologies

Scientific Data(2023)10.1038/s41597-023-02165-4

N/A

0DataRank · unranked

0 citations

Hüseyin Kır, Brian D. Aevermann, Tom Gillespie, Nomi L. Harris, Michael Hawrylycz +15 more

A trivalent mucosal vaccine encoding phylogenetically inferred ancestral RBD sequences confers pan-Sarbecovirus protection in mice

Cell Host & Microbe(2024)10.1016/j.chom.2024.10.016

N/A

0DataRank · unranked

18 citations

Shilpa Sanapala, Carly Dillen, Victoria Rhodes, Christian M. Zmasek, Taras M. Chicz +21 more

Discovery of optimal cell type classification marker genes from single cell RNA sequencing data

BMC Methods(2024)10.1186/s44330-024-00015-2

N/A

0DataRank · unranked

11 citations

Beverly Peng, Ajith V. Pankajam, Thu Elizabeth Duong, Gloria Pryhuber, Richard H. Scheuermann +2 more

Association of disease severity and genetic variation during primary Respiratory Syncytial Virus infections

BMC Medical Genomics(2024)10.1186/s12920-024-01930-7

N/A

0DataRank · unranked

8 citations

Yun Zhang, Anthony Corbett, Chin‐Yi Chu, Alexander Grier, Lu Wang +9 more

Coordinating virus research: The Virus Infectious Disease Ontology

PLoS ONE(2024)10.1371/journal.pone.0285093

N/A

0DataRank · unranked

6 citations

Shane Babcock, Gustavo Carvalho, Lindsay G. Cowell, Sebastian Duesing, Yongqun He +5 more

Astrocytic stress response is induced by exposure to astrocyte-binding antibodies expressed by plasmablasts from pediatric patients with acute transverse myelitis

Journal of Neuroinflammation(2024)10.1186/s12974-024-03127-2

N/A

0DataRank · unranked

2 citations

Kiel M. Telesford, Sara Piccirillo, Yamhilette Licón-Muñoz, Wei Zhang, Key M. Tse +14 more

Discovery of optimal cell type classification marker genes from single cell RNA sequencing data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.22.590194

N/A

0DataRank · unranked

6 citations

Beverly Peng, Ajith V. Pankajam, Thu Elizabeth Duong, Gloria Pryhuber, Richard H. Scheuermann +2 more

Machine Learning Analysis of Post-Acute COVID Symptoms Identifies Distinct Clusters, Severity Groups, and Trajectories

medRxiv(2025)10.1101/2025.11.16.25340350

Top 100%

0DataRank

Top 100%0 citations

Thomas Dalhuisen, Aidan Rogers, Violeta Capric, Helen Davies, Steven G. Deeks +20 more

Anatomical Structures, Cell Types, plus Biomarkers (ASCT+B) table for Brain, v1.8

The Human BioMolecular Atlas Program (HuBMAP) Reference Repository(2025)10.48539/hbm832.vwxm.442

Top 100%

0DataRank

Top 100%0 citations

Kimberly Siletti, Richard H. Scheuermann, Jeremy A. Miller

Common Data Elements in Autoimmune Disease Research

Arthritis Care & Research(2025)10.1002/acr.70026

Top 100%

0DataRank

Top 100%0 citations

Carmen Ufret‐Vincenty, Xinrui Li, Anne Deslattes‐Mays, Richard H. Scheuermann, Belinda Seto +2 more

Early Detection of Emerging SARS-CoV-2 Variants of Interest for Experimental Evaluation

medRxiv(2022)10.1101/2022.08.08.22278553

N/A

0DataRank · unranked

4 citations

James J. Davis, Anna Maria Niewiadomska, Robert Olson, Maulik Shukla, Rick Stevens +4 more

Additional file 1 of Integration and publication of heterogeneous text-mined relationships on the Semantic Web

Figshare(2022)10.6084/m9.figshare.20175835

Top 100%

0DataRank

Top 100%0 citations

Yael Garten, Michel J. Dumontier, Russ B. Altman, Mark A. Musen, Richard H. Scheuermann +1 more

The digital revolution in phenotyping

UNC Libraries(2020)10.17615/x6be-m741

N/A

0DataRank · unranked

0 citations

Nigel Collier, Tudor Groza, Dietrich Rebholz‐Schuhmann, Richard H. Scheuermann, Olivier Bodenreider +14 more

Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop

Journal of Biomedical Semantics(2016)10.1186/s13326-016-0108-7

N/A

0DataRank · unranked

0 citations

Anika Oellrich, Nigel Collier, Tudor Groza, Philippe Rocca-Serra, Larisa Soldatova +5 more

FR-Match: robust matching of cell type clusters from single cell RNA sequencing data using the Friedman–Rafsky non-parametric test

Briefings in Bioinformatics(2020)10.1093/bib/bbaa339

N/A

0DataRank · unranked

17 citations

Brian D. Aevermann, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, Ed S. Lein +2 more

Epidemiology and Sequence-Based Evolutionary Analysis of Circulating Non-Polio Enteroviruses

Microorganisms(2020)10.3390/microorganisms8121856

N/A

0DataRank · unranked

45 citations

Yun Zhang, Richard H. Scheuermann, David Brown

NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.23.308932

N/A

0DataRank · unranked

12 citations

Yun Zhang, Mark Novotny, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge +4 more

A system-view of B. pertussis booster vaccine responses in adults primed with whole-cell vs. acellular vaccine in infancy

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.15.098830

N/A

0DataRank · unranked

0 citations

Mikhail Pomaznoy, Ferran Soldevila, Mariana Babor, Jason W. Bennett, Yuan Tian +12 more

SARS-CoV-2 infection of the oral cavity and saliva

Nature Medicine(2021)10.1038/s41591-021-01296-8

N/A

0DataRank · unranked

827 citations

Paola Pérez, Takafumi Kato, Yu Mikami, Kenichi Okuda, Rodney C. Gilmore +85 more

Impact of SARS-CoV-2 variants on the total CD4+ and CD8+ T cell reactivity in infected or vaccinated individuals

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100355

N/A

0DataRank · unranked

676 citations

John Sidney, Nils Methot, Esther Dawen Yu, Yun Zhang, Jennifer M. Dan +16 more

A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing

Genome Research(2021)10.1101/gr.275569.121

N/A

0DataRank · unranked

95 citations

Yun Zhang, Mark Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller +5 more

Cell type matching in single-cell RNA-sequencing data using FR-Match

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.17.464718

N/A

0DataRank · unranked

2 citations

Brian D. Aevermann, Rohan Gala, Richard H. Scheuermann, Renee Zhang

FastMix: A Versatile Multi-Omics Data Integration Pipeline for Cell Type-Specific Biomarker Inference

medRxiv(2021)10.1101/2021.09.14.21263182

N/A

0DataRank · unranked

0 citations

Hao Sun, Aishwarya Mandava, Brian D. Aevermann, Tobias R. Kollmann, Richard H. Scheuermann +3 more

STARC-9: A Large-scale Dataset for Multi-Class Tissue Classification for CRC Histopathology

arXiv (Cornell University)(2025)10.48550/arxiv.2511.00383

Top 100%

0DataRank

Top 100%0 citations

Rathinaraja Jeyaraj, Maxim Peterson, Terry N. Guo, Richard H. Scheuermann, Curtis P. Langlotz +3 more

Antibodies elicited by SARS-CoV-2 infection or mRNA vaccines have reduced neutralizing activity against Beta and Omicron pseudoviruses

Science Translational Medicine(2022)10.1126/scitranslmed.abn7842

N/A

0DataRank · unranked

125 citations

Saborni Chakraborty, Yong Xue, Terri Gelbart, Joseph C. González, Arianna G. Cassidy +17 more

Defining antigen targets to dissect vaccinia virus and monkeypox virus-specific T cell responses in humans

Cell Host & Microbe(2022)10.1016/j.chom.2022.11.003

N/A

0DataRank · unranked

70 citations

Yun Zhang, Alison Tarke, John Sidney, Paul Rubiro, Maria Reina-Campos +5 more

Genomic evolution of the Coronaviridae family

Virology(2022)10.1016/j.virol.2022.03.005

N/A

0DataRank · unranked

37 citations

Elliot J. Lefkowitz, Anna Maria Niewiadomska, Richard H. Scheuermann, Christian M. Zmasek

Machine learning for cell type classification from single nucleus RNA sequencing data

PLoS ONE(2022)10.1371/journal.pone.0275070

N/A

0DataRank · unranked

33 citations

Beverly Peng, Janelle Uy, Daniel Carrillo, Yun Zhang, Brian D. Aevermann +2 more

A novel vaccine based on SARS-CoV-2 CD4+ and CD8+ T cell conserved epitopes from variants Alpha to Omicron

Scientific Reports(2022)10.1038/s41598-022-21207-2

N/A

0DataRank · unranked

25 citations

Zachary S. Wallace, Stephany Christiny Cavalcante, Maria Paula Fonseca Ribeiro, João Antônio Barbosa Martins Silva, Rafael Ciro Cavalcante +3 more

Animal Models of Enterovirus D68 Infection and Disease

Journal of Virology(2022)10.1128/jvi.00833-22

N/A

0DataRank · unranked

21 citations

Justin Dearing, Yun Zhang, Danielle R. Adney, Richard H. Scheuermann, Andrew Pekosz +2 more

Early detection of emerging SARS-CoV-2 variants of interest for experimental evaluation

Frontiers in Bioinformatics(2022)10.3389/fbinf.2022.1020189

N/A

0DataRank · unranked

8 citations

James J. Davis, Anna Maria Niewiadomska, Robert Olson, Maulik Shukla, Rick Stevens +4 more

FastMix: a versatile data integration pipeline for cell type-specific biomarker inference

Bioinformatics(2022)10.1093/bioinformatics/btac585

N/A

0DataRank · unranked

4 citations

Hao Sun, Aishwarya Mandava, Brian D. Aevermann, Tobias R. Kollmann, Richard H. Scheuermann +3 more

Provenance-Centered Dataset of Drug-Drug Interactions

arXiv (Cornell University)(2015)10.48550/arxiv.1507.05408

Top 100%

0DataRank

Top 100%0 citations

Tobias Kuhn, Richard H. Scheuermann, Michel J. Dumontier, Juan M. Banda

Defining antigen targets to dissect vaccinia virus (VACV) and Monkeypox virus (MPXV)-specific T cell responses in humans

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.06.506534

N/A

0DataRank · unranked

3 citations

Yun Zhang, Alison Tarke, John Sidney, Paul Rubiro, Maria Reina-Campos +5 more

Genetic Variation and Disease Severity of Respiratory Syncytial Viruses

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.28.482432

N/A

0DataRank · unranked

0 citations

Yun Zhang, Anthony Corbett, Chin‐Yi Chu, Alexander Grier, Lu Wang +8 more

Vertebrate-class-specific binding modes of the alphavirus receptor MXRA8

Cell(2023)10.1016/j.cell.2023.09.007

N/A

0DataRank · unranked

38 citations

Maxwell I. Zimmerman, Saravanan Raju, Christopher A. Nelson, John M. Errico, Emily A. Madden +20 more

Targets and cross-reactivity of human T cell recognition of common cold coronaviruses

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101088

N/A

0DataRank · unranked

36 citations

Yun Zhang, Nils Methot, Tara M. Narowski, Elizabeth J. Phillips, S. Mallal +9 more

A cell-level discriminative neural network model for diagnosis of blood cancers

Bioinformatics(2023)10.1093/bioinformatics/btad585

N/A

0DataRank · unranked

9 citations

Jin Ye, Padhraic Smyth, Richard H. Scheuermann, Jack D. Bui, Huan‐You Wang +3 more

Cochlear transcriptome analysis of an outbred mouse population (CFW)

Frontiers in Cellular Neuroscience(2023)10.3389/fncel.2023.1256619

N/A

0DataRank · unranked

9 citations

Neil Tedeschi, Mark Novotny, Yuzuru Ninoyu, Eric Y. Du, Clara Draf +5 more

Richard H. Scheuermann

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