Lingyan Shi

Also affiliated with La Jolla Bioengineering Institute

Biochemistry, Genetics and Molecular BiologyChemistryMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 35 papers. Top paper: “DO-SRS imaging of metabolic dynamics in aging Drosophila”.

DO-SRS imaging of metabolic dynamics in aging Drosophila

The Analyst(2021)10.1039/d1an01638e

N/A

0.881DataRank · unranked

28 citations

Wenxu Zhang, Anthony A. Fung, Lingyan Shi, Yajuan Li

Microglial lipid droplet accumulation in tauopathy brain is regulated by neuronal AMPK

Cell Metabolism(2024)10.1016/j.cmet.2024.03.014

N/A

0.741DataRank · unranked

139 citations

Daniel Muñoz-Mayorga, Yuhang Nie, Ningxin Kang, Yuren Tao, Jessica Lagerwall +7 more

Consensus guidelines for cellular label-free optical metabolic imaging: ensuring accuracy and reproducibility in metabolic profiling

Journal of Biomedical Optics(2025)10.1117/1.jbo.30.s2.s23901

N/A

0.373DataRank · unranked

11 citations

Melissa C. Skala, Kyle P. Quinn, Chiara Stringari, Janet E. Sorrells, Ahmed A. Heikal +33 more

Enhanced stimulated raman scattering of solvent due to anharmonic energy transfer from resonance raman solute molecules

Optics Express(2020)10.1364/oe.395406

N/A

0.330DataRank · unranked

8 citations

Taposh Gayen, Yury Budansky, K. W. Yoo, Jeff Secor, Thomas J. Harvey +5 more

Light and metabolism: label-free optical imaging of metabolic activities in biological systems [Invited]

Biomedical Optics Express(2025)10.1364/boe.572304

N/A

0.312DataRank · unranked

7 citations

Zhi Li, Seongwook Choi, Tri Vu, Lingyan Shi, Junjie Yao +1 more

Towards Mapping Mouse Metabolic Tissue Atlas by Mid‐Infrared Imaging with Heavy Water Labeling

Advanced Science(2022)10.1002/advs.202105437

N/A

0DataRank · unranked

13 citations

Lixue Shi, Lingyan Shi, Mian Wei, Zhilun Zhao, Wei Min +1 more

Alzheimer’s-Associated Upregulation of Mitochondria-Associated ER Membranes After Traumatic Brain Injury

Cellular and Molecular Neurobiology(2022)10.1007/s10571-022-01299-0

N/A

0DataRank · unranked

12 citations

Delfina Larrea, Yimeng Xu, Lingyan Shi, Hylde Zirpoli, Leslie Cummins +9 more

Multi-Molecular Hyperspectral PRM-SRS Imaging

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.25.501472

N/A

0DataRank · unranked

9 citations

Yajuan Li, Anthony A. Fung, Zhi Li, Hongje Jang, Honghao Zha +9 more

Optical Metabolic Imaging Uncovers Sex- and Diet-dependent Lipid Changes in Aging Drosophila Brain

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.01.510416

N/A

0DataRank · unranked

3 citations

Phyllis Chang, Shiriya Sankaran, Hongje Jang, Yuhang Nie, Audrey Zeng +5 more

Bioorthogonal Imaging Uncovers Sex- and Diet-dependent Lipid Metabolic Changes in Drosophila Brain during Aging

Research Square(2022)10.21203/rs.3.rs-2349329/v1

N/A

0DataRank · unranked

1 citations

Phyllis Chang, Shriya Sankaran, Hongje Jang, Yuhang Nie, Audrey Zeng +5 more

Super-resolution SRS microscopy with A-PoD

Nature Methods(2023)10.1038/s41592-023-01779-1

N/A

0DataRank · unranked

85 citations

Yajuan Li, Anthony A. Fung, Pegah Bagheri, Khang Hoang, Dorota Skowronska‐Krawczyk +5 more

Bioorthogonal Stimulated Raman Scattering Imaging Uncovers Lipid Metabolic Dynamics in Drosophila Brain During Aging

GEN Biotechnology(2023)10.1089/genbio.2023.0017

N/A

0DataRank · unranked

23 citations

Phyllis Chang, Shriya Sankaran, Hongje Jang, Yuhang Nie, Audrey Zeng +5 more

Self-Assembled Homopolymeric Spherulites from Small Molecules in Solution

Journal of the American Chemical Society(2023)10.1021/jacs.3c08356

N/A

0DataRank · unranked

19 citations

Yi Li, Zhicheng Jin, Hai Liu, Matthew N. Creyer, Wonjun Yim +9 more

Multimodal imaging of metabolic activities for distinguishing subtypes of breast cancer

Biomedical Optics Express(2023)10.1364/boe.500252

N/A

0DataRank · unranked

18 citations

Chloe Nguyen, Hongje Jang, David T. Hoang, SoeSu Min, Ellen Ackerstaff +3 more

Goldilocks Energy Minimum: Peptide-Based Reversible Aggregation and Biosensing

ACS Applied Materials & Interfaces(2023)10.1021/acsami.3c09627

N/A

0DataRank · unranked

12 citations

Maurice Retout, Amanda A. Chen, Chuxuan Ling, Lubna Amer, Zhicheng Jin +10 more

Bioorthogonal Chemical Imaging of Cell Metabolism Regulated by Aromatic Amino Acids

Journal of Visualized Experiments(2023)10.3791/65121

N/A

0DataRank · unranked

9 citations

Khang Hoang, Chan-yu Kuo, Hetvi Trivedi, Hongje Jang, Lingyan Shi +1 more

Femtosecond optical Kerr effect in normal and grades of cancerous breast tissues as a new optical biopsy method

Journal of Biophotonics(2023)10.1002/jbio.202300344

N/A

0DataRank · unranked

2 citations

Sandra Mamani, Zhi Li, Lingyan Shi, R. R. Alfano, Henry J. Meyer

Multi-molecular hyperspectral PRM-SRS microscopy

Nature Communications(2024)10.1038/s41467-024-45576-6

N/A

0DataRank · unranked

53 citations

Yajuan Li, Anthony A. Fung, Zhi Li, Hongje Jang, Honghao Zha +9 more

Engineered Nanotopographies Induce Transient Openings in the Nuclear Membrane

Advanced Functional Materials(2024)10.1002/adfm.202410035

N/A

0DataRank · unranked

12 citations

Vrund Patel, Zhi Li, Dhivya Pushpa Meganathan, Keivan Rahmani, Leah Sadr +12 more

Multimodal Imaging Unveils the Impact of Nanotopography on Cellular Metabolic Activities

Chemical & Biomedical Imaging(2024)10.1021/cbmi.4c00051

N/A

0DataRank · unranked

11 citations

Einollah Sarikhani, Sirasit Prayotamornkul, Dhivya Pushpa Meganathan, Zeinab Jahed, Lingyan Shi +1 more

Virtual‐point‐based deconvolution for optical‐resolution photoacoustic microscopy

Journal of Biophotonics(2024)10.1002/jbio.202400078

N/A

0DataRank · unranked

5 citations

Anthony DiSpirito, Hongje Jang, Colton Thomas McGarraugh, Van Tu Nguyen, Lingyan Shi +2 more

Divergent iron regulatory states contribute to heterogeneity in breast cancer aggressiveness

iScience(2024)10.1016/j.isci.2024.110661

N/A

0DataRank · unranked

3 citations

Maya Z. Rowell, Sural Ranamukhaarachchi, Alyssa Walker, Yajuan Li, Jorge Villazon +6 more

Metabolic nanoscopy enhanced by experimental and computational approaches

npj Imaging(2024)10.1038/s44303-024-00062-y

N/A

0DataRank · unranked

3 citations

Shuang Wu, Yajuan Li, Zhi Li, Lingyan Shi, Hongje Jang

Super‐Resolution Stimulated Raman Scattering Microscopy with Graphical User Interface–Supported A‐PoD

Current Protocols(2024)10.1002/cpz1.970

N/A

0DataRank · unranked

4 citations

Yajuan Li, Shuang Wu, Lingyan Shi, Hongje Jang

Far-red chemigenetic biosensors for multi-dimensional and super-resolved kinase activity imaging

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.10.579766

N/A

0DataRank · unranked

6 citations

S Sanchez, Longwei Liu, Falk Schneider, Zichen Wang, Hiroyuki Hakozaki +11 more

Label-Free Optical Biopsy Reveals Biomolecular and Morphological Features of Diabetic Kidney Tissue in 2D and 3D

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.27.620507

N/A

0DataRank · unranked

3 citations

Zhi Li, Craig Boote, Petar Markov, Sanjay Jain, Lingyan Shi +1 more

Label-free multimodal optical biopsy reveals biomolecular and morphological features of diabetic kidney tissue in 2D and 3D

Nature Communications(2025)10.1038/s41467-025-59163-w

N/A

0DataRank · unranked

18 citations

Zhi Li, Craig Boote, Petar Markov, Joseph P. Gaut, Sanjay Jain +2 more

METTL3 mediates atheroprone flow–induced glycolysis in endothelial cells

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2424796122

N/A

0DataRank · unranked

16 citations

So Yun Han, Yajuan Li, Dongqiang Yuan, Shuo Qin, Yuhan Li +10 more

A mini review of quantitative optical technologies for imaging cell and tissue metabolism

Current Opinion in Biomedical Engineering(2025)10.1016/j.cobme.2025.100581

N/A

0DataRank · unranked

4 citations

Erick Alvarado, Anton Block, Lingyan Shi, Aining Fan

Optical imaging unveiling metabolic dynamics in cells and organisms during aging and diseases

Med-X(2025)10.1007/s44258-024-00049-9

N/A

0DataRank · unranked

2 citations

Jorge Villazon, Lingyan Shi

A multimodal imaging approach for imaging the metabolic changes resulting from bronchopulmonary dysplasia

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.16.660017

N/A

0DataRank · unranked

2 citations

Zhi Li, Gail Deutsch, Heidi L. Huyck, Niana Beishembieva, Olson, Heather M. +7 more

Distinguishing metastatic triple‐negative breast cancer from nonmetastatic breast cancer using second harmonic generation imaging and resonance Raman spectroscopy

Journal of Biophotonics(2020)10.1002/jbio.202000005

N/A

0DataRank · unranked

29 citations

Jason T. Smith, Lin Zhang, Ellen Ackerstaff, Natalia Kruchevsky, Binlin Wu +4 more

Visualizing Cancer Cell Metabolic Dynamics Regulated With Aromatic Amino Acids Using DO-SRS and 2PEF Microscopy

Frontiers in Molecular Biosciences(2021)10.3389/fmolb.2021.779702

N/A

0DataRank · unranked

22 citations

Khang Hoang, Anthony A. Fung, Sahran Hussain, Lingyan Shi, Pegah Bagheri

Distinct Cellular Profiles of Hif1a and Vegf mRNA Localization in Microglia, Astrocytes and Neurons during a Period of Vascular Maturation in the Auditory Brainstem of Neonate Rats

Brain Sciences(2021)10.3390/brainsci11070944

N/A

0DataRank · unranked

5 citations

Quetanya Brown, Grace Tsui, Ye He, Jia Liu, Lingyan Shi +2 more

Direct Imaging of Lipid Metabolic Changes in Drosophila Ovary During Aging Using DO-SRS Microscopy

Frontiers in Aging(2022)10.3389/fragi.2021.819903

N/A

0DataRank · unranked

35 citations

Pegah Bagheri, Phyllis Chang, Audrey Zeng, Jie Hao, Anthony A. Fung +3 more