John P. Barton

Also affiliated with University of Pittsburgh

Immunology and MicrobiologyBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 26 papers. Top paper: “Application of Traditional Vaccine Development Strategies to SARS-CoV-2”.

Application of Traditional Vaccine Development Strategies to SARS-CoV-2

mSystems(2023)10.1128/msystems.00927-22

N/A

0.718DataRank · unranked

22 citations

Alexandra J. Lee, Elizabeth Sell, Likhitha Kolla, Anthony Gitter, Casey S. Greene +32 more

The Coming of Age of Nucleic Acid Vaccines during COVID-19

mSystems(2023)10.1128/msystems.00928-22

N/A

0.709DataRank · unranked

22 citations

Ronan Lordan, Likhitha Kolla, Elizabeth Sell, Alexandra J. Lee, Nils Wellhausen +46 more

Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure

mSystems(2021)10.1128/msystems.00095-21

N/A

0.489DataRank · unranked

25 citations

Adam L. MacLean, Alexandra J. Lee, Bharath Ramsundar, Vikas Bansal, Michael P. Robson +24 more

Correction for Rando et al., “Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis of Viral Genomics and Structure”

mSystems(2022)10.1128/msystems.01447-21

N/A

0.241DataRank · unranked

4 citations

Adam L. MacLean, Alexandra J. Lee, Bharath Ramsundar, Vikas Bansal, Michael P. Robson +23 more

Estimating linkage disequilibrium and selection from allele frequency trajectories

Genetics(2023)10.1093/genetics/iyac189

N/A

0DataRank · unranked

18 citations

John P. Barton, Yunxiao Li

Small RNA sequencing of field Culex mosquitoes identifies patterns of viral infection and the mosquito immune response

Scientific Reports(2023)10.1038/s41598-023-37571-6

N/A

0DataRank · unranked

15 citations

Zhenchen Hong, Desiree Williams, Sally W. Ireri, Michelle Q. Brown, Tianyun Su +5 more

Bézier interpolation improves the inference of dynamical models from data

Physical review. E(2023)10.1103/physreve.107.024116

N/A

0DataRank · unranked

14 citations

John P. Barton, Kai S Shimagaki

An inference model gives insights into innate immune adaptation and repertoire diversity

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2305859120

N/A

0DataRank · unranked

5 citations

Emily M. Mace, John P. Barton, Yawei Qin

popDMS infers mutation effects from deep mutational scanning data

Bioinformatics(2024)10.1093/bioinformatics/btae499

N/A

0DataRank · unranked

10 citations

Kai S Shimagaki, John P. Barton, Zhenchen Hong

Correlated Allele Frequency Changes Reveal Clonal Structure and Selection in Temporal Genetic Data

Molecular Biology and Evolution(2024)10.1093/molbev/msae060

N/A

0DataRank · unranked

8 citations

John P. Barton, Yunxiao Li

popDMS infers mutation effects from deep mutational scanning data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.29.577759

N/A

0DataRank · unranked

6 citations

John P. Barton, Zhenchen Hong

Parallel HIV-1 fitness landscapes shape viral dynamics in humans and macaques that develop broadly neutralizing antibodies

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.12.603090

N/A

0DataRank · unranked

4 citations

Rebecca M. Lynch, John P. Barton, Kai S Shimagaki

Efficient epistasis inference via higher-order covariance matrix factorization

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.14.618287

N/A

0DataRank · unranked

4 citations

John P. Barton, Kai S Shimagaki

A binary trait model reveals the fitness effects of HIV-1 escape from T cell responses

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.03.583183

N/A

0DataRank · unranked

3 citations

John P. Barton, Yirui Gao

Chronic infections can generate SARS-CoV-2-like bursts of viral evolution without epistasis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.06.616878

N/A

0DataRank · unranked

1 citations

John Strahan, Aaron R. Dinner, John P. Barton, Edwin Rodríguez-Horta

Clonal heterogeneity and antigenic stimulation shape persistence of the latent reservoir of HIV

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.19.604385

N/A

0DataRank · unranked

0 citations

John P. Barton, Marco Antonio Garcia Noceda

Inferring effects of mutations on SARS-CoV-2 transmission from genomic surveillance data

Nature Communications(2025)10.1038/s41467-024-55593-0

N/A

0DataRank · unranked

24 citations

Ahmed Abdul Quadeer, Muhammad Saqib Sohail, Elizabeth Finney, Syed Faraz Ahmed, Matthew R. McKay +2 more

A binary trait model reveals the fitness effects of HIV-1 escape from T cell responses

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2405379122

N/A

0DataRank · unranked

10 citations

John P. Barton, Yirui Gao

Efficient epistasis inference via higher-order covariance matrix factorization

Genetics(2025)10.1093/genetics/iyaf118

N/A

0DataRank · unranked

5 citations

John P. Barton, Kai S Shimagaki

Parallel HIV-1 fitness landscapes shape viral dynamics in humans and macaques that develop broadly neutralizing antibodies

eLife(2025)10.7554/elife.105466

N/A

0DataRank · unranked

1 citations

Rebecca M. Lynch, John P. Barton, Kai S Shimagaki

Back-projection improves inference from sparsely sampled genomic surveillance data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.29.662219

N/A

0DataRank · unranked

1 citations

Brian Lee, Syed Faraz Ahmed, Muhammad Saqib Sohail, Ahmed Abdul Quadeer, Matthew R. McKay +2 more

Inferring fitness seascapes from evolutionary histories

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.08.658500

N/A

0DataRank · unranked

0 citations

Brian Lee, John P. Barton, Yirui Gao

Predicting viral sensitivity to antibodies using genetic sequences and antibody similarities

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.08.669352

N/A

0DataRank · unranked

0 citations

Gargi Kher, Rebecca M. Lynch, John P. Barton, Kai S Shimagaki

Predominance of positive epistasis among drug resistance-associated mutations in HIV-1 protease

PLoS Genetics(2020)10.1371/journal.pgen.1009009

N/A

0DataRank · unranked

39 citations

Lei Dai, John P. Barton, Yushen Du, Yuxiang Tan, Wenwen Pang +4 more

Adenovirus-vectored vaccine containing multidimensionally conserved parts of the HIV proteome is immunogenic in rhesus macaques

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2022496118

N/A

0DataRank · unranked

8 citations

John P. Barton, Lauren Peter, Abishek Chandrashekar, Esther A. Bondzie, Ang Gao +3 more

Inferring effects of mutations on SARS-CoV-2 transmission from genomic surveillance data

medRxiv(2022)10.1101/2021.12.31.21268591

N/A

0DataRank · unranked

17 citations

Ahmed Abdul Quadeer, Muhammad Saqib Sohail, Elizabeth Finney, Syed Faraz Ahmed, Matthew R. McKay +2 more