Arpita Upadhyaya

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 36 papers. Top paper: “An intrinsically disordered region-mediated confinement state contributes to the dynamics and function of transcription factors”.

An intrinsically disordered region-mediated confinement state contributes to the dynamics and function of transcription factors

Molecular Cell(2021)10.1016/j.molcel.2021.01.013

N/A

0.754DataRank · unranked

151 citations

Thomas A. Johnson, Diego M. Presman, Grégory Fettweis, Kaustubh Wagh, Lorenzo Rinaldi +7 more

Three-dimensional structured illumination microscopy with enhanced axial resolution

Nature Biotechnology(2023)10.1038/s41587-022-01651-1

N/A

0.723DataRank · unranked

123 citations

Yicong Wu, Yijun Su, Ivan Rey‐Suarez, Claudia Matthaeus, Taylor B. Updegrove +17 more

WASP family proteins regulate the mobility of the B cell receptor during signaling activation

Nature Communications(2020)10.1038/s41467-020-14335-8

N/A

0.574DataRank · unranked

45 citations

Brittany A. Wheatley, Peter K. Koo, Anshuman Bhanja, Zhou Shu, S. G. J. Mochrie +4 more

Three-dimensional residual channel attention networks denoise and sharpen fluorescence microscopy image volumes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.27.270439

N/A

0.515DataRank · unranked

30 citations

Hideki Sasaki, Hoyin Lai, Yijun Su, Jiamin Liu, Yicong Wu +13 more

Bcl10 is associated with actin dynamics at the T cell immune synapse

Cellular Immunology(2020)10.1016/j.cellimm.2020.104161

N/A

0.509DataRank · unranked

8 citations

Brittany A. Wheatley, Maria Traver, Imran Hussain, Brian C. Schaefer, Arpita Upadhyaya +1 more

Cytotoxic T Lymphocyte Activation Signals Modulate Cytoskeletal Dynamics and Mechanical Force Generation

Frontiers in Immunology(2022)10.3389/fimmu.2022.779888

N/A

0.494DataRank · unranked

26 citations

Altuğ Özçelikkale, Ivan Rey‐Suarez, Lei Li, Scott Davis, Nate Rogers +3 more

The glucocorticoid receptor potentiates aldosterone-induced transcription by the mineralocorticoid receptor

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2413737121

N/A

0.477DataRank · unranked

23 citations

Grégory Fettweis, Kaustubh Wagh, Diego Ceacero‐Heras, Manan Krishnamurthy, Fermín Sánchez de Medina +5 more

A tug of war between filament treadmilling and myosin induced contractility generates actin rings

eLife(2022)10.7554/elife.82658

N/A

0.434DataRank · unranked

17 citations

Kaustubh Wagh, Aashli Pathni, Haoran Ni, Vishavdeep Vashisht, Arpita Upadhyaya +2 more

Nuclear morphology and chromatin organization modulate T cell cytoskeletal remodeling and immune synapse formation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.25.672234

N/A

0.104DataRank · unranked

1 citations

Aashli Pathni, F. Fazekas, Matthew T. Connell, Arpita Upadhyaya, Ildelfonso Suarez

A tug of war between filament treadmilling and myosin induced contractility generates actin ring

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.06.447254

N/A

0.104DataRank · unranked

1 citations

Kaustubh Wagh, Aashli Pathni, Haoran Ni, Vishavdeep Vashisht, Arpita Upadhyaya +2 more

Non-Muscle Myosin II Is Essential for the Negative Regulation of B-Cell Receptor Signaling and B-Cell Activation

Frontiers in Immunology(2022)10.3389/fimmu.2022.842605

N/A

0DataRank · unranked

15 citations

Michelle Lazzaro, Chaohong Liu, Quan‐Zhen Li, Arpita Upadhyaya, Wenxia Song +1 more

Single-molecule tracking reveals two low-mobility states for chromatin and transcriptional regulators within the nucleus

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.25.501476

N/A

0DataRank · unranked

2 citations

Diana A. Stavreva, Rikke AM Jensen, Ville Paakinaho, Grégory Fettweis, R. Louis Schiltz +6 more

Transcription Factor Dynamics: One Molecule at a Time

Annual Review of Cell and Developmental Biology(2023)10.1146/annurev-cellbio-022823-013847

N/A

0DataRank · unranked

63 citations

Diana A. Stavreva, Arpita Upadhyaya, Gordon L. Hager, Kaustubh Wagh

Dynamic switching of transcriptional regulators between two distinct low-mobility chromatin states

Science Advances(2023)10.1126/sciadv.ade1122

N/A

0DataRank · unranked

43 citations

Diana A. Stavreva, Rikkemaja Isahbell J. Møldrup, Ville Paakinaho, Grégory Fettweis, R. Louis Schiltz +6 more

N-WASP-dependent branched actin polymerization attenuates B-cell receptor signaling by increasing the molecular density of receptor clusters

eLife(2023)10.7554/elife.87833

N/A

0DataRank · unranked

3 citations

Margaret K. Seeley‐Fallen, Michelle Lazzaro, Arpita Upadhyaya, Wenxia Song, Anshuman Bhanja

The Glucocorticoid Receptor is Required for Efficient Aldosterone-Induced Transcription by the Mineralocorticoid Receptor

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.26.525745

N/A

0DataRank · unranked

9 citations

Grégory Fettweis, Kaustubh Wagh, Brian Almeida‐Prieto, Manan Krishnamurthy, Arpita Upadhyaya +3 more

N-WASP-dependent branched actin polymerization attenuates B-cell receptor signaling by increasing the molecular density of receptor clusters

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.14.532631

N/A

0DataRank · unranked

0 citations

Margaret K. Seeley‐Fallen, Michelle Lazzaro, Arpita Upadhyaya, Wenxia Song, Anshuman Bhanja

N-WASP-dependent branched actin polymerization attenuates B-cell receptor signaling by increasing the molecular density of receptor clusters

(2023)10.7554/elife.87833.1

N/A

0DataRank · unranked

0 citations

Michelle Lazzaro, Arpita Upadhyaya, Wenxia Song, Anshuman Bhanja

Author Response: N-WASP-dependent branched actin polymerization attenuates B-cell receptor signaling by increasing the molecular density of receptor clusters

(2023)10.7554/elife.87833.2.sa4

N/A

0DataRank · unranked

0 citations

Margaret K. Seeley‐Fallen, Michelle Lazzaro, Arpita Upadhyaya, Wenxia Song, Anshuman Bhanja

Reviewer #1 (Public Review): N-WASP-dependent branched actin polymerization attenuates B-cell receptor signaling by increasing the molecular density of receptor clusters

(2023)10.7554/elife.87833.2.sa2

N/A

0DataRank · unranked

0 citations

Margaret K. Seeley‐Fallen, Michelle Lazzaro, Arpita Upadhyaya, Wenxia Song, Anshuman Bhanja

Reviewer #2 (Public Review): N-WASP-dependent branched actin polymerization attenuates B-cell receptor signaling by increasing the molecular density of receptor clusters

(2023)10.7554/elife.87833.2.sa1

N/A

0DataRank · unranked

0 citations

Margaret K. Seeley‐Fallen, Michelle Lazzaro, Arpita Upadhyaya, Wenxia Song, Anshuman Bhanja

Reviewer #3 (Public Review): N-WASP-dependent branched actin polymerization attenuates B-cell receptor signaling by increasing the molecular density of receptor clusters

(2023)10.7554/elife.87833.2.sa0

N/A

0DataRank · unranked

0 citations

Margaret K. Seeley‐Fallen, Michelle Lazzaro, Arpita Upadhyaya, Wenxia Song, Anshuman Bhanja

N-WASP-dependent branched actin polymerization attenuates B-cell receptor signaling by increasing the molecular density of receptor clusters

(2023)10.7554/elife.87833.2

N/A

0DataRank · unranked

0 citations

Margaret K. Seeley‐Fallen, Michelle Lazzaro, Arpita Upadhyaya, Wenxia Song, Anshuman Bhanja

Mechanical regulation of lymphocyte activation and function

Journal of Cell Science(2024)10.1242/jcs.219030

N/A

0DataRank · unranked

15 citations

Kaustubh Wagh, Ivan Rey‐Suarez, Arpita Upadhyaya, Aashli Pathni

Transcription factors form a ternary complex with NIPBL/MAU2 to localize cohesin at enhancers

Nucleic Acids Research(2025)10.1093/nar/gkaf415

N/A

0DataRank · unranked

8 citations

Kaustubh Wagh, Diana A. Stavreva, Alba Jiménez‐Panizo, Sohyoung Kim, Michelle Lion +15 more

Rapid image deconvolution and multiview fusion for optical microscopy

Nature Biotechnology(2020)10.1038/s41587-020-0560-x

N/A

0DataRank · unranked

200 citations

Yue Li, Yijun Su, Talley J. Lambert, Damian Dalle Nogare, Mark W. Moyle +24 more

Cathepsin B causes trogocytosis-mediated CAR T cell dysfunction 2477

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.389

N/A

0DataRank · unranked

0 citations

Kiet Van Nguyen, Aashli Pathni, F. Fazekas, Etse Gebru, Wenxiang Sun +8 more

Three-dimensional residual channel attention networks denoise and sharpen fluorescence microscopy image volumes

Research Square(2020)10.21203/rs.3.rs-68002/v1

N/A

0DataRank · unranked

12 citations

Hideki Sasaki, Hoyin Lai, Yijun Su, Jiamin Liu, Yicong Wu +12 more

Multiview confocal super-resolution microscopy

Nature(2021)10.1038/s41586-021-04110-0

N/A

0DataRank · unranked

123 citations

Xiaofei Han, Yijun Su, Melissa Glidewell, Jonathan S. Daniels, Jiamin Liu +22 more

Power-law behavior of transcription factor dynamics at the single-molecule level implies a continuum affinity model

Nucleic Acids Research(2021)10.1093/nar/gkab072

N/A

0DataRank · unranked

122 citations

Grégory Fettweis, Diego M. Presman, Ville Paakinaho, Christopher Jarzynski, Arpita Upadhyaya +2 more

Phase separation in transcription factor dynamics and chromatin organization

Current Opinion in Structural Biology(2021)10.1016/j.sbi.2021.06.009

N/A

0DataRank · unranked

97 citations

David A. Garcia, Arpita Upadhyaya, Kaustubh Wagh

Bidirectional feedback between BCR signaling and actin cytoskeletal dynamics

FEBS Journal(2021)10.1111/febs.16074

N/A

0DataRank · unranked

27 citations

Ivan Rey‐Suarez, Wenxia Song, Arpita Upadhyaya, Anshuman Bhanja

A tug of war between filament treadmilling and myosin induced contractility generates actin cortex

Research Square(2021)10.21203/rs.3.rs-673105/v1

N/A

0DataRank · unranked

4 citations

Kaustubh Wagh, Arpita Upadhyaya, Garegin A. Papoian, Qin Ni

Incorporating the image formation process into deep learning improves network performance

Nature Methods(2022)10.1038/s41592-022-01652-7

N/A

0DataRank · unranked

120 citations

Yijun Su, Min Guo, Xiaofei Han, Jiamin Liu, Harshad D. Vishwasrao +13 more

“Stripe” transcription factors provide accessibility to co-binding partners in mammalian genomes

Molecular Cell(2022)10.1016/j.molcel.2022.06.029

N/A

0DataRank · unranked

73 citations

Supriya V. Vartak, A. Conte, Xiang Wang, David A. Garcia, Evan Stevens +20 more

The glucocorticoid receptor associates with the cohesin loader NIPBL to promote long-range gene regulation

Science Advances(2022)10.1126/sciadv.abj8360

N/A

0DataRank · unranked

50 citations

Grégory Fettweis, Sohyoung Kim, David A. Garcia, Saori Fujiwara, Thomas A. Johnson +9 more