Patrick A. Limbach

Also affiliated with University of Cincinnati

Biochemistry, Genetics and Molecular BiologyChemistryEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 32 papers. Top paper: “Downregulation of the FTO m6A RNA demethylase promotes EMT-mediated progression of epithelial tumors and sensitivity to Wnt inhibitors”.

Downregulation of the FTO m6A RNA demethylase promotes EMT-mediated progression of epithelial tumors and sensitivity to Wnt inhibitors

Nature Cancer(2021)10.1038/s43018-021-00223-7

N/A

2.6DataRank · unranked

82 citations

Évelyne Collignon, Clémence Al Wardi, Mohammad Krayem, Martin Bizet, Yan Jia +33 more

Stress-induced modification of Escherichia coli tRNA generates 5-methylcytidine in the variable loop

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2317857121

N/A

0.811DataRank · unranked

19 citations

Manasses Jora, Balasubrahmanyam Addepalli, Patrick A. Limbach, Satenik Valesyan

Preferential import of queuosine-modified tRNAs into Trypanosoma brucei mitochondrion is critical for organellar protein synthesis

Nucleic Acids Research(2021)10.1093/nar/gkab567

N/A

0.584DataRank · unranked

48 citations

Mary Anne T. Rubio, Eva Hegedűsová, Robert Ross, Patrick A. Limbach, Juan Alfonzo +2 more

RNA Cleavage Properties of Nucleobase-Specific RNase MC1 and Cusativin Are Determined by the Dinucleotide-Binding Interactions in the Enzyme-Active Site

International Journal of Molecular Sciences(2022)10.3390/ijms23137021

N/A

0.360DataRank · unranked

10 citations

Jowad Atway, Patrick A. Limbach, Balasubrahmanyam Addepalli, Priti Thakur

Stationary phase effects in hydrophilic interaction liquid chromatographic separation of oligonucleotides

The Analyst(2024)10.1039/d4an01155d

N/A

0.345DataRank · unranked

9 citations

Asif Rayhan, Patrick A. Limbach, Scott Abernathy

TRMT1L-catalyzed m 2 2 G27 on tyrosine tRNA is required for efficient mRNA translation and cell survival under oxidative stress

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.02.591343

N/A

0.208DataRank · unranked

3 citations

Han Liao, Katherine Barondeau, Xinyi Han, Cassandra Herbert, Hunter McConie +6 more

Chemical Amination/Imination of Carbonothiolated Nucleosides During RNA Hydrolysis

Angewandte Chemie(2020)10.1002/ange.202010793

N/A

0.165DataRank · unranked

2 citations

Kayla Borland, Scott Abernathy, Ruoxia Zhao, Melissa Kelley, Stefanie Kellner +3 more

tRNA expression and modifications as critical components in the biology of blood-feeding arthropods

Current Opinion in Insect Science(2025)10.1016/j.cois.2025.101404

N/A

0.104DataRank · unranked

1 citations

Patrick A. Limbach, Joshua B. Benoit, Melissa Kelley

Locating chemical modifications in RNA sequences through ribonucleases and LC-MS based analysis

Methods in enzymology on CD-ROM/Methods in enzymology(2021)10.1016/bs.mie.2021.06.023

N/A

0DataRank · unranked

12 citations

Scott Abernathy, Patrick A. Limbach, Balasubrahmanyam Addepalli, Priti Thakur

Abundances of transfer RNA modifications and transcriptional levels for tRNA-modifying enzymes are sex-specific in mosquitoes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.03.454936

N/A

0DataRank · unranked

2 citations

Melissa Uhran, Cassandra Herbert, George Yoshida, Emmarie R. Watts, Patrick A. Limbach +2 more

Pytheas: a software package for the automated analysis of RNA sequences and modifications via tandem mass spectrometry

Nature Communications(2022)10.1038/s41467-022-30057-5

N/A

0DataRank · unranked

35 citations

A.M. Popova, Scott Abernathy, Kai Sheng, Patrick A. Limbach, James R. Williamson +1 more

Abundances of transfer RNA modifications and transcriptional levels of tRNA-modifying enzymes are sex-associated in mosquitoes

Insect Biochemistry and Molecular Biology(2022)10.1016/j.ibmb.2022.103741

N/A

0DataRank · unranked

16 citations

Melissa Uhran, Cassandra Herbert, George Yoshida, Emmarie R. Watts, Patrick A. Limbach +2 more

m6A RNA methylation orchestrates transcriptional dormancy during paused pluripotency

Nature Cell Biology(2023)10.1038/s41556-023-01212-x

N/A

0DataRank · unranked

35 citations

Brandon Cho, Giacomo Furlan, Julie Fothergill-Robinson, Sylvia-Bryn Martin, Sarah A. McClymont +4 more

Automated Identification of Modified Nucleosides during HRAM-LC-MS/MS using a Metabolomics ID Workflow with Neutral Loss Detection

Journal of the American Society for Mass Spectrometry(2023)10.1021/jasms.3c00298

N/A

0DataRank · unranked

9 citations

Ningxi Yu, Ruoxia Zhao, Andrew Wood, Patrick A. Limbach, Robert Ross

Characterizing Benzo[a]pyrene Adducts in Transfer RNAs Using Liquid Chromatography Coupled with Tandem Mass Spectrometry (LC-MS/MS)

Biomedicines(2023)10.3390/biomedicines11123270

N/A

0DataRank · unranked

3 citations

Corinna L. Ohrnberger, Ella Quinlisk, Balasubrahmanyam Addepalli, Patrick A. Limbach, Cassandra Herbert

m 6 A RNA methylation orchestrates transcriptional dormancy during developmental pausing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.30.526234

N/A

0DataRank · unranked

1 citations

Brandon Cho, Julie Fothergill-Robinson, Giacomo Furlan, Robert Ross, Patrick A. Limbach +2 more

Tyrosine transfer RNA levels and modifications during blood-feeding and vitellogenesis in the mosquito, Aedes aegypti

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.29.569187

N/A

0DataRank · unranked

0 citations

Christopher J. Holmes, Cassandra Herbert, Asif Rayhan, Judd Joves, Melissa Uhran +6 more

Mapping m6A Sites on HIV-1 RNA Using Oligonucleotide LC-MS/MS

Methods and Protocols(2024)10.3390/mps7010007

N/A

0DataRank · unranked

7 citations

Asif Rayhan, Ga-Eun Lee, Sarah Golconda, Hannah Yu, Shihyoung Kim +4 more

Tyrosine transfer RNA levels and modifications during blood‐feeding and vitellogenesis in the mosquito, Aedes aegypti

Insect Molecular Biology(2024)10.1111/imb.12950

N/A

0DataRank · unranked

3 citations

Christopher J. Holmes, Cassandra Herbert, Asif Rayhan, Judd Joves, Melissa Uhran +7 more

Structural basis for aminoacylation of cellular modified tRNALys3 by human lysyl-tRNA synthetase

Nucleic Acids Research(2025)10.1093/nar/gkaf114

N/A

0DataRank · unranked

9 citations

Christina R. Budding, Chathuri Pathirage, Arundhati Kavoor, Cassandra Herbert, Patrick A. Limbach +3 more

TRMT1L-catalyzed m22G27 on tyrosine tRNA is required for efficient mRNA translation and cell survival under oxidative stress

Cell Reports(2025)10.1016/j.celrep.2024.115167

N/A

0DataRank · unranked

13 citations

Han Liao, Katherine Barondeau, Xinyi Han, Cassandra Herbert, Hunter McConie +6 more

Impact of Posttranscriptional Modifications in Novel Bioengineered RNAs (Abstract ID: 163872)

Journal of Pharmacology and Experimental Therapeutics(2025)10.1016/j.jpet.2024.101682

N/A

0DataRank · unranked

0 citations

Mei‐Juan Tu, Ziyuan Wang, Patrick A. Limbach, Hongxu Ding, Ai‐Ming Yu +1 more

A microbiome-derived nutrient underlies tyrosine metabolism and predator avoidance in mosquito larvae

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.02.646203

N/A

0DataRank · unranked

0 citations

Shubham Rathore, Karthikeyan Chandrasegaran, Cassandra Herbert, Chloe Elizabeth G. Sabile, Taylor Wood +14 more

RNA abasic sites in yeast and human cells

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2011511117

N/A

0DataRank · unranked

48 citations

Yesenia Rodriguez, Robert Ross, Ruoxia Zhao, Jason A. Watts, Christopher Grunseich +9 more

A survey of dietary effects on tRNA abundance and modifications

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.10.658430

N/A

0DataRank · unranked

0 citations

Andrew Holmes, Ruoxia Zhao, Cassandra Herbert, Patrick A. Limbach, Todd M. Lowe +2 more

Survey and Validation of tRNA Modifications and Their Corresponding Genes in Bacillus subtilis sp Subtilis Strain 168

Biomolecules(2020)10.3390/biom10070977

N/A

0DataRank · unranked

48 citations

Robert Ross, Marshall Jaroch, Virginie Marchand, Christina Eisenhart, Damien Brégeon +3 more

Identification of the enzymes responsible for m2,2G and acp3U formation on cytosolic tRNA from insects and plants

PLoS ONE(2020)10.1371/journal.pone.0242737

N/A

0DataRank · unranked

15 citations

Ruoxia Zhao, Maggie Thomas, Sarah M. Spigelmyer, Nichlas J. Sebree, Regan O. Bales +5 more

Characterization of UVA-Induced Alterations to Transfer RNA Sequences

Biomolecules(2020)10.3390/biom10111527

N/A

0DataRank · unranked

13 citations

Patrick A. Limbach, Balasubrahmanyam Addepalli, Congliang Sun

Chemical Amination/Imination of Carbonothiolated Nucleosides During RNA Hydrolysis

Angewandte Chemie International Edition(2020)10.1002/anie.202010793

N/A

0DataRank · unranked

33 citations

Kayla Borland, Scott Abernathy, Ruoxia Zhao, Melissa Kelley, Stefanie Kellner +3 more

Dynamic queuosine changes in tRNA couple nutrient levels to codon choice in Trypanosoma brucei

Nucleic Acids Research(2021)10.1093/nar/gkab1204

N/A

0DataRank · unranked

46 citations

Alan C. Kessler, Jeremy C. Henderson, Xiaobei Pan, Ruoxia Zhao, Gabriel Silveira d’Almeida +9 more

Dynamic 23S rRNA modification ho5C2501 benefits Escherichia coli under oxidative stress

Nucleic Acids Research(2021)10.1093/nar/gkab1224

N/A

0DataRank · unranked

36 citations

Stefano Gallo, Puneet Sharma, Maximilian Himmelstoß, Patrick A. Limbach, Jessica Willi +2 more

Oxidative Damage to RNA is Altered by the Presence of Interacting Proteins or Modified Nucleosides

Frontiers in Molecular Biosciences(2021)10.3389/fmolb.2021.697149

N/A

0DataRank · unranked

25 citations

Satenik Valesyan, Manasses Jora, Patrick A. Limbach, Balasubrahmanyam Addepalli, Mariana Estevez