🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Ya Cui

University of California, Irvine

ORCID: 0000-0003-1574-0928
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile
1.1Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A genome-wide spectrum of tandem repeat expansions in 338,963 humans

Cell(2024)10.1016/j.cell.2024.03.004
Top 18%
1.1DataRank
Top 18%39 citations

Wenbin Ye, Jason Sheng Li, Jingyi Jessica Li, Éric Vilain, Tamer Sallam +2 more

Papers

Driven by 15 papers — median percentile 82. Top paper: “Alternative polyadenylation transcriptome-wide association study identifies APA-linked susceptibility genes in brain disorders”.

Alternative polyadenylation transcriptome-wide association study identifies APA-linked susceptibility genes in brain disorders

Nature Communications(2023)10.1038/s41467-023-36311-8
N/A
1.2DataRank · unranked
57 citations

Frederick J. Arnold, Fanglue Peng, Dan Wang, Jason Sheng Li, Sebastian Michels +4 more

A genome-wide spectrum of tandem repeat expansions in 338,963 humans

Cell(2024)10.1016/j.cell.2024.03.004
Top 18%
1.1DataRank
Top 18%39 citations

Wenbin Ye, Jason Sheng Li, Jingyi Jessica Li, Éric Vilain, Tamer Sallam +2 more

RBBP6 maintains glioblastoma stem cells through CPSF3-dependent alternative polyadenylation

Cell Discovery(2024)10.1038/s41421-024-00654-3
N/A
0.580DataRank · unranked
19 citations

Wenyan Chen, Zhilin Long, Jichuan Yu, Jiayao Yang, Zhen Xia +12 more

3′aQTL-atlas: an atlas of 3′UTR alternative polyadenylation quantitative trait loci across human normal tissues

Nucleic Acids Research(2021)10.1093/nar/gkab740
N/A
0.542DataRank · unranked
36 citations

Fanglue Peng, Dan Wang, Yumei Li, Jason Sheng Li, Lei Li +2 more

From Reads to Insights: Integrative Pipelines for Biological Interpretation of ATAC-Seq Data

Genomics Proteomics & Bioinformatics(2021)10.1016/j.gpb.2021.06.002
N/A
0.342DataRank · unranked
5 citations

Jason Sheng Li, Wei Li, Ya Cui

Roles of alternative polyadenylation in psychiatric disorder risk

Genomic Psychiatry(2024)10.61373/gp024i.0049
N/A
0.104DataRank · unranked
1 citations

Steven F. Grieco, Ya Cui, Ole A. Andreassen, Albert LaSpada, Wei Li +2 more

Population‐scale genetic control of alternative polyadenylation and its association with human diseases

Quantitative Biology(2021)10.15302/j-qb-021-0252
N/A
0DataRank · unranked
4 citations

Yumei Li, Xudong Zou, Fuduan Peng, Ya Cui, Eric J. Wagner +2 more

Cellular Heterogeneity–Adjusted cLonal Methylation (CHALM) improves prediction of gene expression

Nature Communications(2021)10.1038/s41467-020-20492-7
N/A
0DataRank · unranked
29 citations

Jiejun Shi, Xiaodong Cui, Ya Cui, Jingyi Jessica Li, Ajay Goel +5 more

A PPARγ/long noncoding RNA axis regulates adipose thermoneutral remodeling in mice

Journal of Clinical Investigation(2023)10.1172/jci170072
N/A
0DataRank · unranked
24 citations

Ya Cui, Vivien Su, Dan Wang, Marcus J. Tol, Lijing Cheng +9 more

Functional characterization of age-dependent p16 epimutation reveals biological drivers and therapeutic targets for colorectal cancer

Journal of Experimental & Clinical Cancer Research(2023)10.1186/s13046-023-02689-y
N/A
0DataRank · unranked
22 citations

Xiaomin Chen, Christy Lee, Jiejun Shi, Emily B. Lawrence, Lanjing Zhang +11 more

The concurrence of DNA methylation and demethylation is associated with transcription regulation

Nature Communications(2021)10.1038/s41467-021-25521-7
N/A
0DataRank · unranked
100 citations

Jianfeng Xu, Yiling Elaine Chen, Jason Sheng Li, Ya Cui, Lanlan Shen +3 more

Cellular heterogeneity–adjusted clonal methylation (CHALM) provides better prediction of gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.23.961813
N/A
0DataRank · unranked
1 citations

Jiejun Shi, Xiaodong Cui, Ya Cui, Jingyi Jessica Li, Ajay Goel +5 more

A multi-modal framework improves prediction of tissue-specific gene expression from a surrogate tissue

EBioMedicine(2024)10.1016/j.ebiom.2024.105305
N/A
0DataRank · unranked
3 citations

Chunfeng He, Jiayao Fan, Yuan Zhou, Chunxiao Cheng, Ran Meng +5 more

TDP-43 dysregulation of polyadenylation site selection is a defining feature of RNA misprocessing in amyotrophic lateral sclerosis and frontotemporal dementia

Journal of Clinical Investigation(2025)10.1172/jci182088
N/A
0DataRank · unranked
24 citations

Ya Cui, Sebastian Michels, Michael R. Colwin, Cameron Stockford, Wenbin Ye +19 more

CALM1, CALM2, and CALM3 expression and translation efficiency provide insight into the severity of calmodulinopathy

medRxiv(2025)10.1101/2025.05.15.25327594
N/A
0DataRank · unranked
1 citations

Stine Boettcher Jacobsen, Jeppe Dyrberg Andersen, Ya Cui, Wei Li, Lia Crotti +5 more