Samuel S. Minot

Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa

Also affiliated with Fred Hutch Cancer Center

Biochemistry, Genetics and Molecular BiologyEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.553Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

VMAP: Vaginal Microbiome Atlas during Pregnancy

JAMIA Open(2024)10.1093/jamiaopen/ooae099

Top 56%

0.290DataRank

Top 56%5 citations

Tomiko Oskotsky, Boris Oskotsky, Camilla Wibrand, Alennie Roldan, Alice Tang +19 more

Papers

Driven by 32 papers — median percentile 43. Top paper: “Effect of the intratumoral microbiota on spatial and cellular heterogeneity in cancer”.

Effect of the intratumoral microbiota on spatial and cellular heterogeneity in cancer

Nature(2022)10.1038/s41586-022-05435-0

N/A

7.7DataRank · unranked

844 citations

Hanrui Wu, Kaitlyn D. LaCourse, Andrew G. Kempchinsky, Alexander Baryiames, Brittany Barber +9 more

A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche

Nature(2024)10.1038/s41586-024-07182-w

N/A

0.904DataRank · unranked

413 citations

Samuel S. Minot, Heather Bouzek, Hanrui Wu, Aitor Blanco‐Míguez, Paolo Manghi +17 more

INVADEseq to identify cell-adherent or invasive bacteria and the associated host transcriptome at single-cell-level resolution

Nature Protocols(2023)10.1038/s41596-023-00888-7

N/A

0.902DataRank · unranked

27 citations

Hanrui Wu, Kaitlyn D. LaCourse, Harini Srinivasan, Matthew Fitzgibbon, Samuel S. Minot +4 more

Fecal microbiota transplantation to prevent acute graft-versus-host disease: pre-planned interim analysis of donor effect

Nature Communications(2025)10.1038/s41467-025-56375-y

N/A

0.760DataRank · unranked

42 citations

Liliia Senyshyn, Maryam Ebadi, Daniel Podlesny, Samuel S. Minot, Ted Gooley +6 more

Microbiome preterm birth DREAM challenge: Crowdsourcing machine learning approaches to advance preterm birth research

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101350

N/A

0.546DataRank · unranked

37 citations

Tomiko Oskotsky, Alice Tang, Alennie Roldan, Verena Chung, Connie Ha +56 more

Colorectal cancer-associated bacteria are broadly distributed in global microbiomes and drivers of precancerous change

Scientific Reports(2024)10.1038/s41598-024-70702-1

N/A

0.425DataRank · unranked

16 citations

Naisi Li, Harini Srinivasan, Jessica Ayers, Ming Yu, Sean T. Koester +6 more

Syntrophic bacterial and host–microbe interactions in bacterial vaginosis

The ISME Journal(2025)10.1093/ismejo/wraf055

N/A

0.312DataRank · unranked

7 citations

Sujatha Srinivasan, Samuel Purvine, Tina L. Fiedler, Owen P. Leiser, Sean Proll +7 more

Fusobacterium sphaericum sp. nov., isolated from a human colon tumor adheres to colonic epithelial cells and induces IL-8 secretion

Gut Microbes(2024)10.1080/19490976.2024.2442522

N/A

0.312DataRank · unranked

7 citations

Yannick Eisele, Alexander A. Baryiames, Hanrui Wu, Claudia Mengoni, Gianmarco Piccinno +10 more

VMAP: Vaginal Microbiome Atlas during Pregnancy

JAMIA Open(2024)10.1093/jamiaopen/ooae099

Top 56%

0.290DataRank

Top 56%5 citations

Tomiko Oskotsky, Boris Oskotsky, Camilla Wibrand, Alennie Roldan, Alice Tang +19 more

VMAP: Vaginal Microbiome Atlas During Pregnancy

medRxiv(2023)10.1101/2023.03.21.23286947

Top 59%

0.263DataRank

Top 59%3 citations

Tomiko Oskotsky, Boris Oskotsky, Camilla Wibrand, Alennie Roldan, Alice Tang +19 more

Gut bacteria-derived sphingolipids alter innate immune responses to oral cholera vaccine antigens

Nature Communications(2025)10.1038/s41467-025-67388-y

N/A

0.104DataRank · unranked

1 citations

Frederick J Heller, Hasan Al Banna, M. Hasanul Kaisar, Susan M. Markiewicz, Emily L. Pruitt +16 more

Community assembly modeling of microbial evolution within Barrett’s esophagus and esophageal adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.14.633020

N/A

0.104DataRank · unranked

1 citations

I. Sfiligoi, Antonio González, Justin P. Shaffer, Mariya Kazachkova, Yuhan Weng +9 more

Gut bacteria-derived sphingolipids alter innate immune responses to oral cholera vaccine antigens

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.01.470820

N/A

0.104DataRank · unranked

1 citations

Fred Heller, Hasan Al Banna, M. Hasanul Kaisar, Fahima Chowdhury, Taufiqur Rahman Bhuiyan +14 more

Deep learning imaging analysis to identify bacterial metabolic states associated with carcinogen production

Discover Imaging.(2025)10.1007/s44352-025-00006-1

N/A

0DataRank · unranked

15 citations

Sarwesh Rauniyar, Norma M. Morella, Daniel M. Lachance, Samuel S. Minot, Neelendu Dey +1 more

Distal gut colonization by oral bacteria during intensive chemotherapy: direct evidence from strain-level analysis of paired samples

npj Biofilms and Microbiomes(2025)10.1038/s41522-025-00725-7

N/A

0DataRank · unranked

5 citations

Hakan Gem, Kevin K. Chung, Jeffrey S. McLean, Kristopher A. Kerns, Meredith A.J. Hullar +10 more

Effect of fecal microbiota transplantation on gut microbiota functional profile in recipients of allogeneic hematopoietic cell transplantation

Gut Microbes(2025)10.1080/19490976.2025.2551882

N/A

0DataRank · unranked

4 citations

Swetha Reddi, Liliia Senyshyn, Samuel S. Minot, Ted Gooley, Amanda J. Kabage +5 more

The type VI secretion system governs strain maintenance in a wild mammalian gut microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.29.690828

N/A

0DataRank · unranked

1 citations

Kyle L. Asfahl, Bentley Lim, Savannah K Bertolli, Samuel S. Minot, Matthew C. Radey +8 more

Different Patterns of Oral Mucositis and Microbiota Injury After Total Body Irradiation- Versus Chemotherapy-Based Myeloablative Allogeneic Hematopoietic Cell Transplantation

Advances in Radiation Oncology(2025)10.1016/j.adro.2025.101787

N/A

0DataRank · unranked

0 citations

Hakan Gem, Gale Sebastian, Rania Abasaeed, Michele Lloid, Yolanda D. Tseng +5 more

Strategies to Facilitate Translational Advances from Microbiome Surveys

Trends in Microbiology(2020)10.1016/j.tim.2020.02.002

N/A

0DataRank · unranked

9 citations

Samuel S. Minot, Amy D. Willis

TCR2HLA: calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.18.665436

N/A

0DataRank · unranked

0 citations

Anastasia A. Minervina, Mikhail V. Pogorelyy, Puneet Rawat, Melanie R. Shapiro, Leeana D. Peters +11 more

Genomic Stability and Genetic Defense Systems in Dolosigranulum pigrum , a Candidate Beneficial Bacterium from the Human Microbiome

mSystems(2021)10.1128/msystems.00425-21

N/A

0DataRank · unranked

33 citations

Silvio D. Brugger, Isabel F. Escapa, Chelsey A. Skeete, Sean L. Cotton, Sara M. Eslami +9 more

The cancer chemotherapeutic 5-fluorouracil is a potent Fusobacterium nucleatum inhibitor and its activity is modified by intratumoral microbiota

Cell Reports(2022)10.1016/j.celrep.2022.111625

N/A

0DataRank · unranked

167 citations

Martha A. Zepeda‐Rivera, Andrew G. Kempchinsky, Alexander Baryiames, Samuel S. Minot, Christopher D. Johnston +2 more

Colorectal Cancer-Associated Bacterial Genes Are Widely Encoded In Human Microbiomes

Research Square(2022)10.21203/rs.3.rs-1918763/v1

N/A

0DataRank · unranked

0 citations

Naisi Li, Sean T. Koester, Ming Yu, Jason A. Dominitz, William Grady +2 more

Specific host metabolite and gut microbiome alterations are associated with bone loss during spaceflight

Cell Reports(2023)10.1016/j.celrep.2023.112299

N/A

0DataRank · unranked

33 citations

Kristopher A. Kerns, Tsute Chen, Bruno P. Lima, Guo Liu, Pin Ha +22 more

Scalable single-cell profiling of chromatin modifications with sciCUT&Tag

Nature Protocols(2023)10.1038/s41596-023-00905-9

N/A

0DataRank · unranked

27 citations

Jacob E. Greene, Steven J. Wu, Christine A. Codomo, Samuel S. Minot, Scott N. Furlan +3 more

phippery: a software suite for PhIP-Seq data analysis

Bioinformatics(2023)10.1093/bioinformatics/btad583

N/A

0DataRank · unranked

12 citations

Kevin Sung, Samuel S. Minot, Meghan Garrett, Caitlin I. Stoddard, Alexandra C. Willcox +5 more

Optimizing metaproteomics database construction: lessons from a study of the vaginal microbiome

mSystems(2023)10.1128/msystems.00678-22

N/A

0DataRank · unranked

8 citations

Sujatha Srinivasan, Samuel Purvine, Tina L. Fiedler, Owen P. Leiser, Sean Proll +4 more

Fusobacterium sphaericum sp. nov. , isolated from a human colon tumor, adheres to colonic epithelial cells and induces IL-8 secretion

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.16.545380

N/A

0DataRank · unranked

0 citations

Yannick Eisele, Alexander A. Baryiames, Hanrui Wu, Claudia Mengoni, Gianmarco Piccinno +10 more

Strain-level characterization of health-associated bacterial consortia that colonize the human gut during infancy

medRxiv(2023)10.1101/2023.12.16.23300077

N/A

0DataRank · unranked

0 citations

Koshlan Mayer-Blackwell, Andrew Fioré-Gartland, Andrew M. Johnson, Steven G. Self, Parveen Bhatti +6 more

A sex-dependent salivary bacterium influences oral mucositis severity after allogeneic hematopoietic cell transplantation

npj Biofilms and Microbiomes(2024)10.1038/s41522-024-00611-8

N/A

0DataRank · unranked

5 citations

Maryam Ebadi, Gale Sebastian, Rania Abasaeed, Michele Lloid, Samuel S. Minot +3 more

Species- and subspecies-level characterization of health-associated bacterial consortia that colonize the human gut during infancy

Gut Microbes(2024)10.1080/19490976.2024.2414975

N/A

0DataRank · unranked

3 citations

Koshlan Mayer-Blackwell, Andrew Fioré-Gartland, Andrew M. Johnson, Steven G. Self, Parveen Bhatti +6 more

Oral acute graft‐versus‐host disease

eJHaem(2024)10.1002/jha2.1033

N/A

0DataRank · unranked

0 citations

Gale Sebastian, Hakan Gem, Samuel S. Minot, Armin Rashidi, Farzad Teymouri

Samuel S. Minot

Indexed papers

Top data-sharing exemplar

Papers