🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Yu‐Chiao Chiu

University of Pittsburgh

ORCID: 0000-0003-1647-8634

Also affiliated with Department of Health, UPMC Hillman Cancer Center, University of Pittsburgh Medical Center

Computer ScienceBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile
0.431Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Integrative multi-omics characterization of hepatocellular carcinoma in Hispanic patients

JNCI Journal of the National Cancer Institute(2024)10.1093/jnci/djae207
Top 43%
0.431DataRank
Top 43%9 citations

Xiaojing Wang, Yu‐Chiao Chiu, Hakim Bouamar, Francis E. Sharkey, Jorge E. Lopera +15 more

Papers

Driven by 26 papers — median percentile 57. Top paper: “Classification of Cancer Types Using Graph Convolutional Neural Networks”.

Classification of Cancer Types Using Graph Convolutional Neural Networks

Frontiers in Physics(2020)10.3389/fphy.2020.00203
N/A
0.748DataRank · unranked
145 citations

Yu‐Chiao Chiu, Allen Hererra, Milad Mostavi, Joshua Ramirez, Yidong Chen +3 more

Deep learning tackles single-cell analysis—a survey of deep learning for scRNA-seq analysis

Briefings in Bioinformatics(2021)10.1093/bib/bbab531
N/A
0.652DataRank · unranked
76 citations

Zhentao Liu, Tinghe Zhang, Md Musaddaqui Hasib, Yu‐Chiao Chiu, Zhenqing Ye +8 more

Prediction and interpretation of cancer survival using graph convolution neural networks

Methods(2021)10.1016/j.ymeth.2021.01.004
N/A
0.621DataRank · unranked
62 citations

Yu‐Chiao Chiu, Songyao Zhang, Joshua Ramirez, Yidong Chen, Yufei Huang +2 more

shinyDeepDR: A user-friendly R Shiny app for predicting anti-cancer drug response using deep learning

Patterns(2024)10.1016/j.patter.2023.100894
N/A
0.448DataRank · unranked
9 citations

Michael Ning, Tapsya Nayak, Michael J. Kasper, Satdarshan P. Monga, Yufei Huang +3 more

Integrative multi-omics characterization of hepatocellular carcinoma in Hispanic patients

JNCI Journal of the National Cancer Institute(2024)10.1093/jnci/djae207
Top 43%
0.431DataRank
Top 43%9 citations

Xiaojing Wang, Yu‐Chiao Chiu, Hakim Bouamar, Francis E. Sharkey, Jorge E. Lopera +15 more

STEAP2 promotes hepatocellular carcinoma progression via increased copper levels and stress-activated MAP kinase activity

Scientific Reports(2024)10.1038/s41598-024-63368-2
N/A
0.360DataRank · unranked
10 citations

Acarizia Easley, Hakim Bouamar, Guixi Zheng, Xiang Gu, Junhua Yang +6 more

DepLink: an R Shiny app to systematically link genetic and pharmacologic dependencies of cancer

Bioinformatics Advances(2023)10.1093/bioadv/vbad076
N/A
0.360DataRank · unranked
10 citations

Li‐Ju Wang, Michael Ning, Gabriela Rubannelsonkumar, Eric Jin, Siyuan Zheng +5 more

Systems approach for congruence and selection of cancer models towards precision medicine

PLoS Computational Biology(2024)10.1371/journal.pcbi.1011754
N/A
0.330DataRank · unranked
8 citations

Osama Shiraz Shah, Yu‐Chiao Chiu, Tianzhou Ma, Jennifer M. Atkinson, Steffi Oesterreich +3 more

High-Throughput Empirical and Virtual Screening to Discover Novel Inhibitors of Polyploid Giant Cancer Cells in Breast Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.23.614522
N/A
0.208DataRank · unranked
3 citations

Chien-Hung Shih, Jinxiong Cheng, Hsiao-Chun Chen, Li‐Ju Wang, Yanhao Tan +3 more

Inferring Drug–Gene Relationships in Cancer Using Literature-Augmented Large Language Models

Cancer Research Communications(2025)10.1158/2767-9764.crc-25-0030
N/A
0.170DataRank · unranked
2 citations

Li-Ju Wang, Tyler M. Yasaka, Yun‐A Shin, Michael Ning, Yanhao Tan +11 more

Cellular and molecular heterogeneities and signatures, and pathological trajectories of fatal COVID-19 lungs defined by spatial single-cell transcriptome analysis

medRxiv(2023)10.1101/2023.02.24.23286388
N/A
0.111DataRank · unranked
1 citations

Wen Meng, Zhentao Liu, Md Musaddaqul Hasib, Hugh Galloway, Suzane Ramos da Silva +13 more

Convolutional neural network models for cancer type prediction based on gene expression

BMC Medical Genomics(2020)10.1186/s12920-020-0677-2
N/A
0DataRank · unranked
253 citations

Yu‐Chiao Chiu, Yufei Huang, Yidong Chen, Milad Mostavi

Predicting drug response through tumor deconvolution by cancer cell lines

Patterns(2024)10.1016/j.patter.2024.100949
N/A
0DataRank · unranked
8 citations

Yu‐Chiao Chiu, Tzu‐Pin Lu, Tzu‐Hung Hsiao, Yidong Chen, Yu-Ching Hsu

A Metastatic Cancer Expression Generator (MetGen): A Generative Contrastive Learning Framework for Metastatic Cancer Generation

Cancers(2024)10.3390/cancers16091653
N/A
0DataRank · unranked
2 citations

Yu‐Chiao Chiu, Yidong Chen, Yufei Huang, Zhentao Liu

reguloGPT: Harnessing GPT for Knowledge Graph Construction of Molecular Regulatory Pathways

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.27.577521
N/A
0DataRank · unranked
11 citations

Yiming Zeng, Arun Das, Sumin Jo, Tinghe Zhang, Parth Patel +6 more

Metastatic Cancer Expression Generator (MetGen): A Generative Contrastive Learning Framework for Metastatic Cancer Generation

Preprints.org(2024)10.20944/preprints202404.0397.v1
N/A
0DataRank · unranked
1 citations

Yu‐Chiao Chiu, Yidong Chen, Yufei Huang, Zhentao Liu

MetaphorPrompt - An Analogical Reasoning Approach for Extracting Causal Links from Biological Text

(2024)10.1145/3698587.3701384
N/A
0DataRank · unranked
1 citations

Yu‐Chiao Chiu, Yufei Huang, Jianqiu Zhang, Parth Patel

High-Throughput Empirical and Virtual Screening To Discover Novel Inhibitors of Polyploid Giant Cancer Cells in Breast Cancer

Analytical Chemistry(2025)10.1021/acs.analchem.4c05138
N/A
0DataRank · unranked
10 citations

Chien-Hung Shih, Jinxiong Cheng, Hsiao-Chun Chen, Li‐Ju Wang, Yanhao Tan +7 more

Cell type prediction with neighborhood-enhanced cellular embedding using deep learning on hematoxylin and eosin-stained images

Computational and Structural Biotechnology Journal(2025)10.1016/j.csbj.2025.07.026
N/A
0DataRank · unranked
0 citations

Hanzhou Wang, Tapsya Nayak, Zhenqing Ye, Yu‐Chiao Chiu, Yu-Fang Jin +3 more

Predicting and characterizing a cancer dependency map of tumors with deep learning

Science Advances(2021)10.1126/sciadv.abh1275
N/A
0DataRank · unranked
89 citations

Siyuan Zheng, Li‐Ju Wang, Brian S. Iskra, Manjeet K. Rao, Peter J. Houghton +3 more

Targeting IL-1/IRAK1/4 signaling in acute myeloid leukemia stem cells following treatment and relapse

Leukemia(2025)10.1038/s41375-025-02816-y
N/A
0DataRank · unranked
0 citations

Mark W. LaMere, Hiroki Kawano, Daniel Byun, Elizabeth A. LaMere, Yu‐Chiao Chiu +12 more

GDF6-CD99 Signaling Regulates Src and Ewing Sarcoma Growth

Cell Reports(2020)10.1016/j.celrep.2020.108332
N/A
0DataRank · unranked
26 citations

David J. Elzi, Panneerselvam Jayabal, Xiuye Ma, Yu‐Chiao Chiu, Yidong Chen +5 more

CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training

BMC Bioinformatics(2021)10.1186/s12859-021-04157-w
N/A
0DataRank · unranked
21 citations

Yu‐Chiao Chiu, Yidong Chen, Yufei Huang, Milad Mostavi

Transformer for Gene Expression Modeling (T-GEM): An Interpretable Deep Learning Model for Gene Expression-Based Phenotype Predictions

Cancers(2022)10.3390/cancers14194763
N/A
0DataRank · unranked
51 citations

Md Musaddaqul Hasib, Yu‐Chiao Chiu, Zhifeng Han, Yufang Jin, Mario Flores +3 more

Molecular and immune signatures, and pathological trajectories of fatal COVID‐19 lungs defined by in situ spatial single‐cell transcriptome analysis

Journal of Medical Virology(2023)10.1002/jmv.29009
N/A
0DataRank · unranked
18 citations

Wen Meng, Zhentao Liu, Md Musaddaqul Hasib, Hugh Galloway, Suzane Ramos da Silva +13 more

Predicting Sites of Epitranscriptome Modifications Using Unsupervised Representation Learning Based on Generative Adversarial Networks

Frontiers in Physics(2020)10.3389/fphy.2020.00196
N/A
0DataRank · unranked
16 citations

Milad Mostavi, Yu‐Chiao Chiu, Yidong Chen, Jianqiu Zhang, Yufei Huang +1 more