🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Siqi Shen

Beijing Friendship Hospital

ORCID: 0000-0003-1661-1247
Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile
0Author DataRank

Indexed papers

0in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 9 papers. Top paper: “Pathogenic human variant that dislocates GATA2 zinc fingers disrupts hematopoietic gene expression and signaling networks”.

Pathogenic human variant that dislocates GATA2 zinc fingers disrupts hematopoietic gene expression and signaling networks

Journal of Clinical Investigation(2023)10.1172/jci162685
N/A
0.449DataRank · unranked
19 citations

Siqi Shen, Giovanni A. Botten, Thomas Olender, Koichi R. Katsumura, Kirby D. Johnson +15 more

scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data

Bioinformatics(2022)10.1093/bioinformatics/btac372
N/A
0.373DataRank · unranked
11 citations

Ye Zheng, Sündüz Keleş, Siqi Shen

Normalization and De-noising of Single-cell Hi-C Data with BandNorm and 3DVI

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.10.434870
N/A
0.330DataRank · unranked
8 citations

Siqi Shen, Sündüz Keleş, Ye Zheng

AdaLiftOver: high-resolution identification of orthologous regulatory elements with Adaptive liftOver

Bioinformatics(2023)10.1093/bioinformatics/btad149
N/A
0.292DataRank · unranked
6 citations

Siqi Shen, Sündüz Keleş, Chenyang Dong

Oncogenic DEAD-box ATPase DDX41 establishes transcript ensembles via CLK3-dependent and -independent mechanisms

Nature Communications(2025)10.1038/s41467-025-65195-z
N/A
0.165DataRank · unranked
2 citations

Siqi Shen, Christina M. Jurotich, Saritha S. D’Souza, Johnathan J. Caldon, Igor I. Slukvin +4 more

Normalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D

Genome biology(2022)10.1186/s13059-022-02774-z
N/A
0DataRank · unranked
51 citations

Siqi Shen, Sündüz Keleş, Ye Zheng

Helicobacter pylori FabX contains a [4Fe-4S] cluster essential for unsaturated fatty acid synthesis

Nature Communications(2021)10.1038/s41467-021-27148-0
N/A
0DataRank · unranked
23 citations

Lin Zhang, Liping Zeng, Lu Yu, Yuanyuan Duan, Siqi Shen +16 more

scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.22.465520
N/A
0DataRank · unranked
0 citations

Ye Zheng, Sündüz Keleş, Siqi Shen

Constructing and deconstructing GATA2-regulated cell fate programs to establish developmental trajectories

The Journal of Experimental Medicine(2020)10.1084/jem.20191526
N/A
0DataRank · unranked
44 citations

Daniel Conn, Evgenia Shishkova, Koichi R. Katsumura, Peng Liu, Siqi Shen +10 more