Alex E. Clark

MedicineImmunology and MicrobiologyBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 46 papers. Top paper: “Zika Virus Targets Glioblastoma Stem Cells through a SOX2-Integrin αvβ5 Axis”.

Zika Virus Targets Glioblastoma Stem Cells through a SOX2-Integrin αvβ5 Axis

Cell stem cell(2020)10.1016/j.stem.2019.11.016

N/A

0.785DataRank · unranked

186 citations

Pinar Mesci, Jean Bernatchez, Ryan C. Gimple, Xiuxing Wang, Simon T. Schafer +29 more

A human three-dimensional neural-perivascular ‘assembloid’ promotes astrocytic development and enables modeling of SARS-CoV-2 neuropathology

Nature Medicine(2021)10.1038/s41591-021-01443-1

N/A

0.751DataRank · unranked

148 citations

David Sievert, Alex E. Clark, Sangmoon Lee, Hannah G. Federman, Benjamin D. Gastfriend +5 more

Age-dependent regulation of SARS-CoV-2 cell entry genes and cell death programs correlates with COVID-19 severity

Science Advances(2021)10.1126/sciadv.abf8609

N/A

0.637DataRank · unranked

69 citations

Ben A. Croker, Clarence Yapp, Gaurav N. Joshi, Johan Spetz, Cameron Fraser +26 more

A Human 3D neural assembloid model for SARS-CoV-2 infection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.09.430349

N/A

0.583DataRank · unranked

6 citations

David Sievert, Alex E. Clark, Hannah G. Federman, Benjamin D. Gastfriend, Eric V. Shusta +4 more

SREBP2-dependent lipid gene transcription enhances the infection of human dendritic cells by Zika virus

Nature Communications(2022)10.1038/s41467-022-33041-1

N/A

0.571DataRank · unranked

44 citations

Ying-Ting Wang, Karla M. Viramontes, Joan M. Valls Cuevas, Jialei Xie, Fernanda Ana‐Sosa‐Batiz +15 more

Interactions of SARS-CoV-2 envelope protein with amilorides correlate with antiviral activity

PLoS Pathogens(2021)10.1371/journal.ppat.1009519

N/A

0.553DataRank · unranked

39 citations

Haley Siddiqi, Daniela V. Castro, Anna A. De Angelis, Aaron L. Oom, Charlotte A. Stoneham +7 more

Conformational flexibility in neutralization of SARS-CoV-2 by naturally elicited anti-SARS-CoV-2 antibodies

Communications Biology(2022)10.1038/s42003-022-03739-5

N/A

0.500DataRank · unranked

27 citations

Michael Mor, Bingting Ma, Alex E. Clark, Joel Alter, Michal Werbner +9 more

Analysis of SARS-CoV-2 RNA Persistence across Indoor Surface Materials Reveals Best Practices for Environmental Monitoring Programs

mSystems(2021)10.1128/msystems.01136-21

N/A

0.442DataRank · unranked

18 citations

Victor J. Cantú, Alex E. Clark, Sandra L. Leibel, Anahid Foroughishafiei, Anushka Saha +38 more

Leveraging Allele-Specific Expression for Therapeutic Response Gene Discovery in Glioblastoma

Cancer Research(2021)10.1158/0008-5472.can-21-0810

N/A

0.373DataRank · unranked

11 citations

Briana C. Prager, Cuiqing Zhong, Donglim Park, Zhe Zhu, Ryan C. Gimple +8 more

A therapy for suppressing canonical and noncanonical SARS-CoV-2 viral entry and an intrinsic intrapulmonary inflammatory response

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2408109121

N/A

0.360DataRank · unranked

10 citations

Rachael N. McVicar, Rabi Murad, Elizabeth M. Kwong, Alex E. Clark, Asuka Alvarado +23 more

Matrix-Insensitive Sensor Arrays via Peptide-Coated Nanoparticles: Rapid Saliva Screening for Pathogens in Oral and Respiratory Diseases

ACS Applied Materials & Interfaces(2024)10.1021/acsami.4c15662

N/A

0.360DataRank · unranked

10 citations

Lubna Amer, Elizabeth Thompson, Alex E. Clark, Aaron F. Garretson, Aaron F. Carlin +4 more

Structure-selected RBM immunogens prime polyclonal memory responses that neutralize SARS-CoV-2 variants of concern

PLoS Pathogens(2022)10.1371/journal.ppat.1010686

N/A

0.330DataRank · unranked

8 citations

Alex E. Clark, Valentina L. Kouznetsova, Eduardo Olmedillas, Andrea Castro, Igor F. Tsigelny +8 more

Neutralizing Antibody Responses After Severe Acute Respiratory Syndrome Coronavirus 2 BA.2 and BA.2.12.1 Infection Do Not Neutralize BA.4 and BA.5 and Can Be Blunted by Nirmatrelvir/Ritonavir Treatment

Open Forum Infectious Diseases(2023)10.1093/ofid/ofad154

N/A

0.312DataRank · unranked

7 citations

Alex E. Clark, Aaron F. Garretson, William Bray, Magali Porrachia, AsherLev T Santos +4 more

Validating Tools to Detect and Inactivate Monkeypox Virus in Human Milk

Breastfeeding Medicine(2023)10.1089/bfm.2023.0175

N/A

0.312DataRank · unranked

7 citations

Annalee Fürst, Kristija Sejane, Lisa M. Stellwagen, Marissa Proost, David T. Pride +4 more

Conformational Flexibility in Neutralization of SARS-CoV-2 by Naturally Elicited Anti-SARS-CoV-2 Antibodies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.03.486854

N/A

0.208DataRank · unranked

3 citations

Michael Mor, Bingting Ma, Alex E. Clark, Joel Alter, Michal Werbner +9 more

In Vitro Diagnostic Assay to Detect SARS-CoV-2-Neutralizing Antibody in Patient Sera Using Engineered ACE-2 Mini-Protein

Viruses(2022)10.3390/v14122823

N/A

0.208DataRank · unranked

3 citations

Anderson Gomes, Alex E. Clark, Tayse Andrade Rodrigues, Melissa Ledgerwood‐Lee, Westley Van Zant +10 more

Design and Development of an Antigen Test for SARS-CoV-2 Nucleocapsid Protein to Validate the Viral Quality Assurance Panels

Viruses(2024)10.3390/v16050662

N/A

0.208DataRank · unranked

3 citations

Melissa Ledgerwood‐Lee, Howard Brickner, Alex E. Clark, Aaron F. Garretson, Rishi Graham +4 more

A Label-free Optical Biosensor-Based Point-of-Care Test for the Rapid Detection of Monkeypox Virus

medRxiv(2024)10.1101/2024.07.03.24309903

N/A

0.208DataRank · unranked

3 citations

Elif Seymour, Howard Brickner, Alex E. Clark, İris Çelebi, Michael B. Townsend +6 more

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

mBio(2025)10.1128/mbio.04015-24

N/A

0.208DataRank · unranked

3 citations

Benjamin P. Kellman, Daniel R. Sandoval, Thomas Mandel Clausen, Robert Cooper, Alhosna Benjdia +60 more

Antibody Levels From High-Throughput Variant-Specific SARS-CoV-2 Anti-Spike Immunoglobulin G and Angiotensin-Converting Enzyme 2 Neutralization Assays Correlate With COVID-19 Infection Risk in a Large Population

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae622

N/A

0.104DataRank · unranked

1 citations

Alex E. Clark, Nicole H. Goldhaber, Holly Valentine, Andrea Rivera, Toan Van Ngo +11 more

A Self-Immolative Fluorescent Probe for Selective Detection of SARS-CoV-2 Main Protease

Analytical Chemistry(2022)10.1021/acs.analchem.2c02381

N/A

0DataRank · unranked

10 citations

Jiajing Zhou, Yong Cheng, Zhicheng Jin, Alex E. Clark, Tengyu He +10 more

Genome-Wide Interrogation of SARS-CoV-2 RNA-Protein Interactions Uncovers Hidden Regulatory Sites

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.26.656146

N/A

0DataRank · unranked

0 citations

Karen X. Zhao, Laliv Tadri, Kurt Tamaru, Brian A. Yee, Katherine Rothamel +16 more

Virologic and Immunologic Characterization of COVID-19 Recrudescence after Nirmatrelvir/Ritonavir Treatment

Research Square(2022)10.21203/rs.3.rs-1662783/v1

N/A

0DataRank · unranked

41 citations

Alex E. Clark, Antoine Chaillon, Aaron F. Garretson, William Bray, Magali Porrachi +3 more

Multi-clonal SARS-CoV-2 neutralization by antibodies isolated from severe COVID-19 convalescent donors

PLoS Pathogens(2021)10.1371/journal.ppat.1009165

N/A

0DataRank · unranked

60 citations

Michal Werbner, Joel Alter, Modi Safra, Elad Chomsky, Jamie Casey Lee +23 more

Discovery and functional interrogation of SARS-CoV-2 protein-RNA interactions

Research Square(2022)10.21203/rs.3.rs-1394331/v1

N/A

0DataRank · unranked

2 citations

Joy S. Xiang, Jasmine R. Mueller, En‐Ching Luo, Brian A. Yee, Danielle Schafer +24 more

PCIF1-mediated deposition of 5′-cap N 6 ,2′- O -dimethyladenosine in ACE2 and TMPRSS2 mRNA regulates susceptibility to SARS-CoV-2 infection

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2210361120

N/A

0DataRank · unranked

35 citations

Shaobo Wang, Lujing Wu, Wanyu Li, William Bray, Alex E. Clark +5 more

Identification of global inhibitors of cellular glycosylation

Nature Communications(2023)10.1038/s41467-023-36598-7

N/A

0DataRank · unranked

31 citations

Christian Büll, Thomas D. Madsen, Erandi Lira‐Navarrete, Thomas Mandel Clausen, Alex E. Clark +17 more

Protease-Responsive Potential-Tunable AIEgens for Cell Selective Imaging of TMPRSS2 and Accurate Inhibitor Screening

Analytical Chemistry(2023)10.1021/acs.analchem.2c04988

N/A

0DataRank · unranked

11 citations

Alex E. Clark, Wonjun Yim, Raina M. Borum, Yu‐Ci Chang, Zhicheng Jin +4 more

1-O-Octadecyl-2-O-benzyl-sn-glyceryl-3-phospho-GS-441524 (V2043). Evaluation of Oral V2043 in a Mouse Model of SARS-CoV-2 Infection and Synthesis and Antiviral Evaluation of Additional Phospholipid Esters with Enhanced Anti-SARS-CoV-2 Activity

Journal of Medicinal Chemistry(2023)10.1021/acs.jmedchem.3c00046

N/A

0DataRank · unranked

10 citations

James R. Beadle, Alex E. Clark, Kendra L. Gully, Fernando R. Moreira, Ralph S. Baric +14 more

Enhanced broad spectrum in vitro antiviral efficacy of 3-F-4-MeO-Bn, 3-CN, and 4-CN derivatives of lipid remdesivir nucleoside monophosphate prodrugs

Antiviral Research(2023)10.1016/j.antiviral.2023.105718

N/A

0DataRank · unranked

10 citations

Michael K. Lo, Xingquan Zhang, James R. Beadle, Nadejda Valiaeva, Aaron F. Garretson +9 more

Discovery and Mechanism of SARS-CoV-2 Main Protease Inhibitors

Journal of Medicinal Chemistry(2021)10.1021/acs.jmedchem.1c00566

N/A

0DataRank · unranked

108 citations

Indrasena Reddy Kummetha, Shashi Kant Tiwari, Matthew B. Huante, Alex E. Clark, Shaobo Wang +6 more

A cysteine protease inhibitor blocks SARS-CoV-2 infection of human and monkey cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.23.347534

N/A

0DataRank · unranked

17 citations

Chien‐Te K. Tseng, Aleksandra Drelich, Pavla Fajtová, Balachandra Chenna, Demetrios H. Kostomiris +24 more

The lung employs an intrinsic surfactant-mediated inflammatory response for viral defense

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.26.525578

N/A

0DataRank · unranked

0 citations

Rachael N. McVicar, Rabi Murad, Elizabeth M. Kwong, Alex E. Clark, Asuka Alvarado +23 more

Surfactant deficiency increases SARS-CoV-2 canonical and non-canonical viral entry to lung epithelial cells and exacerbates intrapulmonary inflammatory responses

Research Square(2023)10.21203/rs.3.rs-2694520/v1

N/A

0DataRank · unranked

0 citations

Rachael N. McVicar, Elizabeth M. Kwong, Alex E. Clark, Asuka Alvarado, Bethany A. Grimmig +21 more

1-O-Octadecyl-2-O-benzyl-sn-glyceryl-3-phospho-GS-441524 (V2043). Evaluation of Oral V2043 in a Mouse Model of SARS-CoV-2 Infection and Synthesis and Antiviral Evaluation of Additional Phospholipid Esters with Enhanced Anti-SARS-CoV-2 Activity

Figshare(2023)10.17615/zmxg-nk26

N/A

0DataRank · unranked

0 citations

Ralph S. Baric, R.L. Graham, James R. Beadle, Rachael N. McVicar, Tariq M. Rana +14 more

A label-free optical biosensor-based point-of-care test for the rapid detection of Monkeypox virus

Biosensors and Bioelectronics(2024)10.1016/j.bios.2024.116932

N/A

0DataRank · unranked

27 citations

Elif Seymour, Howard Brickner, Alex E. Clark, İris Çelebi, Michael B. Townsend +6 more

Rethinking Remdesivir: Synthesis, Antiviral Activity and Pharmacokinetics of Oral Lipid Prodrugs

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.26.269159

N/A

0DataRank · unranked

24 citations

Aaron F. Carlin, James R. Beadle, Nadejda Valiaeva, Xingquan Zhang, Alex E. Clark +9 more

Zika Virus Is Transmitted in Neural Progenitor Cells via Cell-to-Cell Spread, and Infection Is Inhibited by the Autophagy Inducer Trehalose

Journal of Virology(2020)10.1128/jvi.02024-20

N/A

0DataRank · unranked

12 citations

Zhe Zhu, Florian Krach, Jeremy N. Rich, G Yeo, Deborah H. Spector +1 more

Oral pharmacokinetics and efficacy of oral phospholipid remdesivir nucleoside prodrugs against SARS-CoV-2 in mice

Antimicrobial Agents and Chemotherapy(2024)10.1128/aac.01039-24

N/A

0DataRank · unranked

6 citations

James R. Beadle, Jeremy Ardanuy, Alex E. Clark, Victoria Rhodes, Aaron F. Garretson +6 more

Bioinformatics-Based Design Strategy and Development of an Antigen Test for SARS-CoV-2 Nucleocapsid Protein

Preprints.org(2024)10.20944/preprints202404.0108.v1

N/A

0DataRank · unranked

0 citations

Melissa Ledgerwood‐Lee, Howard Brickner, Alex E. Clark, Aaron F. Garretson, Rishi Graham +4 more

Interferon-Inducible Guanylate-Binding Protein 5 Inhibits Replication of Multiple Viruses by Binding to the Oligosaccharyltransferase Complex and Inhibiting Glycoprotein Maturation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.01.591800

N/A

0DataRank · unranked

8 citations

Wanyu Li, Lingling Wang, Shashi Kant Tiwari, William Bray, Lujing Wu +8 more

Structure-selected RBM immunogens prime polyclonal memory responses that neutralize SARS-CoV-2 variants of concern

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.01.462840

N/A

0DataRank · unranked

0 citations

Valentina L. Kouznetsova, Alex E. Clark, Eduardo Olmedillas, Andrea Castro, Igor F. Tsigelny +6 more

Virologic and Immunologic Characterization of Coronavirus Disease 2019 Recrudescence After Nirmatrelvir/Ritonavir Treatment

Clinical Infectious Diseases(2022)10.1093/cid/ciac496

N/A

0DataRank · unranked

63 citations

Alex E. Clark, Antoine Chaillon, Aaron F. Garretson, William Bray, Magali Porrachia +4 more

Leveraging Allele-Specific Expression for Therapeutic Response Gene Discovery in Glioblastoma

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.22.449493

N/A

0DataRank · unranked

3 citations

Briana C. Prager, Donglim Park, Zhe Zhu, Ryan C. Gimple, Jean Bernatchez +6 more

The Prolyl-tRNA Synthetase Inhibitor Halofuginone Inhibits SARS-CoV-2 Infection

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.22.436522

N/A

0DataRank · unranked

23 citations

Thomas Mandel Clausen, Chelsea Nora, Adam P. Cribbs, Andrea Denardo, Alex E. Clark +41 more

A Human 3D neural assembloid model for SARS-CoV-2 infection

Research Square(2021)10.21203/rs.3.rs-214352/v1

N/A

0DataRank · unranked

5 citations

Lu Wang, David Sievert, Alex E. Clark, Hannah G. Federman, Benjamin D. Gastfriend +4 more