🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Justin B. Siegel

University of California, Davis

ORCID: 0000-0003-1782-4076
Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 7%percentile
0.124Author DataRank

Indexed papers

4in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Design to Data for mutants of β-glucosidase B from Paenibacillus polymyxa: L171M, H178M, M221L, E406W, N160E, F415M

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.17.387829
Top 71%
0.124DataRank
Top 71%1 citations

Daniel Seung Kim, Peishan Huang, Ashley Vater, Justin B. Siegel, Xiaoqing Huang

Papers

Driven by 28 papers — median percentile 0. Top paper: “Discovery of a natural cyan blue: A unique food-sourced anthocyanin could replace synthetic brilliant blue”.

Discovery of a natural cyan blue: A unique food-sourced anthocyanin could replace synthetic brilliant blue

Science Advances(2021)10.1126/sciadv.abe7871
N/A
0.631DataRank · unranked
66 citations

Julie-Anne Fenger, Randall K. Powers, Gregory T. Sigurdson, Luca Grisanti, Kathryn G. Guggenheim +17 more

Nanobody-Based Lateral Flow Immunoassay for the Rapid Detection of Aflatoxin B1 in Almond Milk

ACS Food Science & Technology(2022)10.1021/acsfoodscitech.2c00118
N/A
0.553DataRank · unranked
39 citations

Natalia Vasylieva, Irene Gonzalez-Garcia, Maojun Jin, Ryan W. Caster, Justin B. Siegel +2 more

Protein stability prediction by fine-tuning a protein language model on a mega-scale dataset

PLOS Computational Biology(2024)10.1371/journal.pcbi.1012248
N/A
0.538DataRank · unranked
35 citations

Kush Narang, Justin B. Siegel, Simon K. S. Chu

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

Nature Communications(2021)10.1038/s41467-021-27222-7
N/A
0.500DataRank · unranked
27 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +45 more

High-throughput mutagenesis reveals unique structural features of human ADAR1

Nature Communications(2020)10.1038/s41467-020-18862-2
N/A
0.489DataRank · unranked
25 citations

Erin Doherty, Yixuan Xie, Anil K. Padyana, Fang Fang, Yue Zhang +5 more

Development of potent inhibitors of the human microsomal epoxide hydrolase

European Journal of Medicinal Chemistry(2020)10.1016/j.ejmech.2020.112206
N/A
0.360DataRank · unranked
10 citations

Nalin Singh, Sophie Négrel, Yue Zhang, Damien Magis, Capucine Roux +7 more

Docking carbocations into terpene synthase active sites using chemically meaningful constraints—The TerDockin approach

Methods in enzymology on CD-ROM/Methods in enzymology(2024)10.1016/bs.mie.2024.02.006
N/A
0.292DataRank · unranked
6 citations

Terrence E. O’Brien, Justin B. Siegel, Dean J. Tantillo, Ian S. Torrence

Activation-Free Upgrading of Carboxylic Acids to Aldehydes and Alcohols

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.28.667276
N/A
0.165DataRank · unranked
2 citations

Samer Saleh, Sean Perea, Emma Luu, Youtian Cui, Jiasi Sun +13 more

Design to Data for mutants of β-glucosidase B from Paenibacillus polymyxa: L171M, H178M, M221L, E406W, N160E, F415M

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.17.387829
Top 71%
0.124DataRank
Top 71%1 citations

Daniel Seung Kim, Peishan Huang, Ashley Vater, Justin B. Siegel, Xiaoqing Huang

Engineering the key central metabolic enzyme to utilize a non-canonical redox cofactor

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.28.656713
N/A
0.104DataRank · unranked
1 citations

Edward J. King, Youtian Cui, Linyue Zhang, Justin B. Siegel, Han Li +1 more

Directed evolution of phosphite dehydrogenase to cycle noncanonical redox cofactors via universal growth selection platform

Nature Communications(2022)10.1038/s41467-022-32727-w
N/A
0DataRank · unranked
46 citations

Edward J. King, W. B. Black, Christian M. Heckmann, Allison E. Wolder, Youtian Cui +6 more

Engineering Embden–Meyerhof–Parnas Glycolysis to Generate Noncanonical Reducing Power

ACS Catalysis(2022)10.1021/acscatal.2c01837
N/A
0DataRank · unranked
24 citations

Youtian Cui, Derek Aspacio, Frances Nicklen, Linyue Zhang, Sarah Maxel +5 more

Orthogonal glycolytic pathway enables directed evolution of noncanonical cofactor oxidase

Nature Communications(2022)10.1038/s41467-022-35021-x
N/A
0DataRank · unranked
22 citations

Sarah Maxel, Yulai Zhang, Karissa C. Kenney, Youtian Cui, Emma Luu +5 more

Discovery and molecular elucidation of pervasive Aflatoxin B1 oxidation activity in the laccase superfamily

ChemRxiv(2022)10.26434/chemrxiv-2022-hfctd
N/A
0DataRank · unranked
0 citations

Emma Luu, Ka Yi Tsui, Jun Yang, Augustine Arredondo, Youtian Cui +6 more

Missing a “Missing Self” Mechanism: Modeling and Detection of Ly49 Expression in Canine NK Cells

ImmunoHorizons(2023)10.4049/immunohorizons.2300092
N/A
0DataRank · unranked
4 citations

Aryana M. Razmara, Phillip W. Gingrich, Robert B. Rebhun, William J. Murphy, Michael S. Kent +4 more

Shifting Redox Reaction Equilibria on Demand Using an Orthogonal Redox Cofactor

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.29.555398
N/A
0DataRank · unranked
2 citations

Yulai Zhang, Youtian Cui, Edward J. King, W. B. Black, Sean Perea +4 more

Design to Data for mutants of B-glucosidase B from Paenibacillus polymyxa : V311D, F248N, Y166H, Y166K, M221K

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.10.540081
Top 100%
0DataRank
Top 100%0 citations

Justin B. Siegel, Ashley Vater, M.M. Chan

Shifting redox reaction equilibria on demand using an orthogonal redox cofactor

Nature Chemical Biology(2024)10.1038/s41589-024-01702-5
N/A
0DataRank · unranked
35 citations

Yulai Zhang, Youtian Cui, Emma Luu, Edward J. King, W. B. Black +7 more

Engineering Escherichia coli Pyruvate Metabolism to Generate Noncanonical Reducing Power

ACS Catalysis(2024)10.1021/acscatal.4c02131
N/A
0DataRank · unranked
8 citations

Emma Luu, Suphanida Worakaensai, Youtian Cui, Sarah Maxel, Edward J. King +6 more

Expression and Characterization of SARS-CoV-2 Spike Protein in Thermothelomyces heterothallica C1

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.01.651343
N/A
0DataRank · unranked
0 citations

Justin Wong, Katia Haddad, Anne Huuskonen, Anindya Karmaker, Varun Gore +29 more

Functional characterization and reclassification of an enzyme previously proposed to be a limonoid UDP‐glucosyltransferase

Journal of the Science of Food and Agriculture(2020)10.1002/jsfa.10547
N/A
0DataRank · unranked
6 citations

Steven D Allmon, Justin B. Siegel, Youtian Cui

Preliminary Techno-Economic Assessment of Animal Cell-Based Meat

Foods(2020)10.3390/foods10010003
N/A
0DataRank · unranked
80 citations

Fangzhou Li, Jason S. Fell, Sara A. Pace, Justin B. Siegel, Ilias Tagkopoulos +2 more

Techno-economic assessment of animal cell-based meat

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.10.292144
N/A
0DataRank · unranked
6 citations

Fangzhou Li, Jason S. Fell, Sara A. Pace, Justin B. Siegel, Ilias Tagkopoulos +2 more

PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design

Preprints.org(2020)10.20944/preprints202002.0097.v1
N/A
0DataRank · unranked
4 citations

Jared Adolf‐Bryfogle, Jason C. Klima, Sergey Lyskov, Jason W. Labonte, Steven J. Bertolani +16 more

Computational design of two new soluble epoxide hydrolase (sEH) inhibitors

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.17.302026
N/A
0DataRank · unranked
0 citations

Sambid Adhikari, Peishan Huang, Justin B. Siegel, Jennifer Liem

Design to Data for mutants of β-glucosidase B from Paenibacillus polymyxa : I45K, A357S, I20A, I20V, and I20E

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.07.330233
Top 100%
0DataRank
Top 100%0 citations

Ashley Vater, Justin B. Siegel, Jennie A. Luong

Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta

UNC Libraries(2020)10.17615/mvrr-v077
N/A
0DataRank · unranked
0 citations

David Baker, Firas Khatib, S. I. Cooper, Jeff Flatten, Robert Kleffner +2 more

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438423
N/A
0DataRank · unranked
4 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +43 more