Akiko Koide

Also affiliated with New York University

MedicineBiochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Papers

Driven by 36 papers. Top paper: “Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome”.

Microbial signatures in the lower airways of mechanically ventilated COVID-19 patients associated with poor clinical outcome

Nature Microbiology(2021)10.1038/s41564-021-00961-5

N/A

0.792DataRank · unranked

196 citations

Matthew Chung, Luis F. Angel, Jun-Chieh J. Tsay, Benjamin G. Wu, Stephen T. Yeung +47 more

mRNA COVID-19 vaccine elicits potent adaptive immune response without the acute inflammation of SARS-CoV-2 infection

iScience(2023)10.1016/j.isci.2023.108572

N/A

0.716DataRank · unranked

25 citations

Jasmine Shwetar, Joseph C. Devlin, Terkild B. Buus, Sophie L. Gray-Gaillard, Akiko Koide +16 more

Targeting the KRAS α4-α5 allosteric interface inhibits pancreatic cancer tumorigenesis

Small GTPases(2021)10.1080/21541248.2021.1906621

N/A

0.631DataRank · unranked

16 citations

Catherine Marelia-Bennet, Julia E. Lefler, Mariyam Zuberi, Eric Denbaum, Akiko Koide +8 more

Exploring switch II pocket conformation of KRAS(G12D) with mutant-selective monobody inhibitors

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2302485120

N/A

0.533DataRank · unranked

34 citations

Takamitsu Hattori, Imran Mahmood Khan, Eliezra Glasser, Akiko Koide, Gayatri Ketavarapu +10 more

mRNA COVID-19 vaccine elicits potent adaptive immune response without the persistent inflammation seen in SARS-CoV-2 infection

medRxiv(2021)10.1101/2021.04.20.21255677

N/A

0.510DataRank · unranked

29 citations

Jasmine Shwetar, Joseph C. Devlin, Terkild B. Buus, Sophie L. Gray-Gaillard, Akiko Koide +16 more

The expression profile and tumorigenic mechanisms of CD97 (ADGRE5) in glioblastoma render it a targetable vulnerability

Cell Reports(2023)10.1016/j.celrep.2023.113374

N/A

0.494DataRank · unranked

26 citations

Nainita Roy, Takamitsu Hattori, Devin Bready, Hayley Donaldson, Christopher M. Lawson +28 more

Impaired Humoral Immunity to SARS-CoV-2 Vaccination in Non-Hodgkin Lymphoma and CLL Patients

medRxiv(2021)10.1101/2021.06.02.21257804

N/A

0.483DataRank · unranked

24 citations

Jessica Caro, Akiko Koide, Michael L. Grossbard, Judith D. Goldberg, Bruce G. Raphael +10 more

Affinity Maturation of Single-Domain Antibodies by Yeast Surface Display

Methods in Molecular Biology(2012)10.1007/978-1-61779-968-6_26

N/A

0.477DataRank · unranked

23 citations

Shohei Koide, Akiko Koide

Monobody adapter for functional antibody display on nanoparticles for adaptable targeted delivery applications

Nature Communications(2022)10.1038/s41467-022-33490-8

N/A

0.470DataRank · unranked

22 citations

Laura G. Bracaglia, Akiko Koide, Jenna DiRito, Taras Lysyy, Lauren Harkins +18 more

Microbial signatures in the lower airways of mechanically ventilated COVID19 patients associated with poor clinical outcome

medRxiv(2021)10.1101/2021.02.23.21252221

N/A

0.457DataRank · unranked

20 citations

Matthew Chung, Luis F. Angel, Jun-Chieh J. Tsay, Benjamin G. Wu, Stephen T. Yeung +47 more

The ACE2-binding Interface of SARS-CoV-2 Spike Inherently Deflects Immune Recognition

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.166748

N/A

0.449DataRank · unranked

19 citations

Akiko Koide, María G. Noval, Tatyana Panchenko, Larizbeth A. Romero, Kai Wen Teng +5 more

High-valency Anti-CD99 Antibodies Toward the Treatment of T Cell Acute Lymphoblastic Leukemia

Journal of Molecular Biology(2021)10.1016/j.jmb.2021.167402

N/A

0.396DataRank · unranked

13 citations

Takamitsu Hattori, Mohamed Ashraf Ali, Gayatri Ketavarapu, Akiko Koide, Christopher Y. Park +2 more

Antibody isotype diversity against SARS-CoV-2 is associated with differential serum neutralization capacities

Scientific Reports(2021)10.1038/s41598-021-84913-3

N/A

0DataRank · unranked

52 citations

Maria E. Kaczmarek, Akiko Koide, Bruno A. Rodriguez-Rodriguez, Ping Louie, Takuya Tada +18 more

Zinc binding alters the conformational dynamics and drives the transport cycle of the cation diffusion facilitator YiiP

The Journal of General Physiology(2021)10.1085/jgp.202112873

N/A

0DataRank · unranked

28 citations

Shujie Fan, Akiko Koide, Shohei Koide, Oliver Beckstein, David L. Stokes +1 more

Antigen clasping by two antigen-binding sites of an exceptionally specific antibody for histone methylation

UNC Libraries(2020)10.17615/23g9-an88

N/A

0DataRank · unranked

0 citations

Takamitsu Hattori, Irina Dementieva, Kohei Kurosawa, Adrian T. Grzybowski, Yupeng Zheng +10 more

Broad Ranges of Affinity and Specificity of Anti-Histone Antibodies Revealed by a Quantitative Peptide Immunoprecipitation Assay

UNC Libraries(2020)10.17615/79c0-ae12

N/A

0DataRank · unranked

0 citations

N. Yasui, Shingo Nishikori, Brian D. Strahl, Stephen M. Fuchs, Akiko Koide +3 more

T Cell Receptor-Like Recognition of Tumor In Vivo by Synthetic Antibody Fragment

UNC Libraries(2020)10.17615/99ex-re07

N/A

0DataRank · unranked

0 citations

Akiko Koide, Bryan Yoder, Michael Jay, Hong Yuan, Sachdev S. Sidhu +5 more

SHP2 inhibition diminishes KRASG12C cycling and promotes tumor microenvironment remodeling

The Journal of Experimental Medicine(2020)10.1084/jem.20201414

N/A

0DataRank · unranked

259 citations

Shuai Li, Kai Wen Teng, Connor Foster, David H. Peng, Hao Ran +18 more

Crystal structures of bacterial small multidrug resistance transporter EmrE in complex with structurally diverse substrates

eLife(2022)10.7554/elife.76766

N/A

0DataRank · unranked

32 citations

Olive E. Burata, B. Ben Koff, Akiko Koide, Shohei Koide, Randy B Stockbridge +1 more

Inhibition of RAS-driven signaling and tumorigenesis with a pan-RAS monobody targeting the Switch I/II pocket

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2204481119

N/A

0DataRank · unranked

24 citations

Imran Khan, Kai Wen Teng, Akiko Koide, Mariyam Zuberi, Jianping Li +5 more

Multiplex bead binding assays using off-the-shelf components and common flow cytometers

Journal of Immunological Methods(2020)10.1016/j.jim.2020.112952

N/A

0DataRank · unranked

15 citations

Akiko Koide, Tatyana Panchenko, Larizbeth A. Romero, Kai Wen Teng, Alexis D. Corrado +2 more

Phosphorylation-dependent pseudokinase domain dimerization drives full-length MLKL oligomerization

Nature Communications(2023)10.1038/s41467-023-42255-w

N/A

0DataRank · unranked

36 citations

Sarah E. Garnish, Katherine A. Davies, Katrina A. Black, Andrew Leis, Christopher R. Horne +14 more

The structural basis of promiscuity in small multidrug resistance transporters

Nature Communications(2020)10.1038/s41467-020-19820-8

N/A

0DataRank · unranked

56 citations

Christian B. Macdonald, Olive E. Burata, B. Ben Koff, Akiko Koide, Eric Denbaum +3 more

Selective inhibition of STAT3 signaling using monobodies targeting the coiled-coil and N-terminal domains

Nature Communications(2020)10.1038/s41467-020-17920-z

N/A

0DataRank · unranked

70 citations

Camille Michiels, Tim Kükenshöner, Tania Brandstoetter, Barbara Maurer, Akiko Koide +7 more

Monobody Inhibitor Selective to the Phosphatase Domain of SHP2 and its Use as a Probe for Quantifying SHP2 Allosteric Regulation

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.168010

N/A

0DataRank · unranked

14 citations

Kohei Kurosawa, Eliezra Glasser, Gayatri Ketavarapu, Samara Albazzaz, Akiko Koide +2 more

The expression profile and tumorigenic mechanisms of CD97 (ADGRE5) in glioblastoma render it a targetable vulnerability

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.31.555733

N/A

0DataRank · unranked

2 citations

Nainita Roy, Takamitsu Hattori, Devin Bready, Hayley Donaldson, Christopher M. Lawson +26 more

Proton-coupled transport mechanism of the efflux pump NorA

Nature Communications(2024)10.1038/s41467-024-48759-3

N/A

0DataRank · unranked

30 citations

Yan Li, Akiko Koide, Huihui Kuang, Victor J. Torres, Shohei Koide +3 more

Molecular basis for antibody recognition of multiple drug–peptide/MHC complexes

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2319029121

N/A

0DataRank · unranked

11 citations

Epsa Rajak, Injin Bang, Akiko Koide, Takamitsu Hattori, Benjamin G. Neel +2 more

Inhibition and degradation of NRAS with a pan-NRAS monobody

Oncogene(2024)10.1038/s41388-024-03186-y

N/A

0DataRank · unranked

9 citations

Gayatri Ketavarapu, Akiko Koide, Megan Mazzei, Mubashir J. Mintoo, Eliezra Glasser +7 more

Selective targeting of oncogenic hotspot mutations of the HER2 extracellular domain

Nature Chemical Biology(2024)10.1038/s41589-024-01751-w

N/A

0DataRank · unranked

7 citations

Takamitsu Hattori, Nadia Leloup, Alexis D. Corrado, Atekana Nyamaa, Akiko Koide +4 more

Binding mode–guided development of high-performance antibodies targeting site-specific posttranslational modifications

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2411720121

N/A

0DataRank · unranked

5 citations

Rohan N. Shah, Akiko Koide, Alexander J. Ruthenburg, Shohei Koide, Takamitsu Hattori +1 more

Engineering antibody–drug conjugates targeting an adhesion GPCR, CD97

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2516627122

N/A

0DataRank · unranked

2 citations

Michelle Wang, Alexis D. Corrado, Suzanne Gross, Michelle Fang, Injin Bang +10 more

Engineering Antibody-Drug Conjugates targeting an Adhesion GPCR, CD97

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.24.671942

N/A

0DataRank · unranked

0 citations

Michelle Wang, Alexis D. Corrado, Suzanne Gross, Michelle Fang, Injin Bang +10 more

Conformational interconversion of MLKL and disengagement from RIPK3 precede cell death by necroptosis

Nature Communications(2021)10.1038/s41467-021-22400-z

N/A

0DataRank · unranked

107 citations

Yanxiang Meng, Akiko Koide, Jarrod J. Sandow, Eric Denbaum, Annette V. Jacobsen +14 more

Structural basis for the reaction cycle of DASS dicarboxylate transporters

eLife(2020)10.7554/elife.61350

N/A

0DataRank · unranked

73 citations

Noah Trebesch, Jennifer J. Marden, Nicolette Cocco, Jinmei Song, Akiko Koide +4 more

Selective and noncovalent targeting of RAS mutants for inhibition and degradation

Nature Communications(2021)10.1038/s41467-021-22969-5

N/A

0DataRank · unranked

86 citations

Steven T. Tsai, Takamitsu Hattori, Carmine Fedele, Akiko Koide, Chao Yang +6 more