D. Thirumalai

Biochemistry, Genetics and Molecular BiologyMaterials SciencePhysics and Astronomy

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 23 papers. Top paper: “Differences in the free energies between the excited states of A β 40 and A β 42 monomers encode their aggregation propensities”.

Differences in the free energies between the excited states of A β 40 and A β 42 monomers encode their aggregation propensities

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2002570117

N/A

0.646DataRank · unranked

73 citations

John E. Straub, D. Thirumalai, Debayan Chakraborty

Asymmetry in histone rotation in forced unwrapping and force quench rewrapping in a nucleosome

Nucleic Acids Research(2021)10.1093/nar/gkab263

N/A

0.416DataRank · unranked

15 citations

D. Thirumalai, Govardhan Reddy

RNA encodes physical information

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.11.627970

N/A

0.406DataRank · unranked

14 citations

Vita Zhang, Ameya P. Jalihal, Benjamin M. Stormo, Sierra J. Cole, Joanne Ekena +4 more

Low Force Unfolding of a Single-Domain Protein by Parallel Pathways

The Journal of Physical Chemistry B(2021)10.1021/acs.jpcb.0c11308

N/A

0.241DataRank · unranked

4 citations

Michael Hinczewski, D. Thirumalai, Pavel I. Zhuravlev

Sequence Determines the Switch in the Fibril Forming Regions in the Low Complexity FUS Protein and Its Variants

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.08.451535

N/A

0.104DataRank · unranked

1 citations

Debayan Chakraborty, Mauro L. Mugnai, John E. Straub, D. Thirumalai, Abhinaw Kumar

Theory and Simulations of condensin mediated loop extrusion in DNA

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.27.119578

N/A

0DataRank · unranked

2 citations

Atreya Dey, Guang Shi, D. Thirumalai, Ryota Takaki

Asymmetry in Histone Rotation in Forced Unwrapping and Force Quench Rewrapping in a Nucleosome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.21.348664

N/A

0DataRank · unranked

0 citations

D. Thirumalai, Govardhan Reddy

Retardation of folding rates of substrate proteins in the nanocage of GroEL

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.08.373423

N/A

0DataRank · unranked

0 citations

D. Thirumalai, Eda Koculi

Low force unfolding of a single-domain protein by parallel pathways

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.19.423596

N/A

0DataRank · unranked

0 citations

Michael Hinczewski, D. Thirumalai, Pavel I. Zhuravlev

Information flow, Gating, and Energetics in dimeric molecular motors

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.30.474541

N/A

0DataRank · unranked

4 citations

Mauro L. Mugnai, D. Thirumalai, Ryota Takaki

Theory and simulations of condensin mediated loop extrusion in DNA

Nature Communications(2021)10.1038/s41467-021-26167-1

N/A

0DataRank · unranked

0 citations

Atreya Dey, Guang Shi, D. Thirumalai, Ryota Takaki

Molecular mechanisms of steric pressure generation and membrane remodeling by disordered proteins

Biophysical Journal(2022)10.1016/j.bpj.2022.08.028

N/A

0DataRank · unranked

14 citations

Hyun Woo Cho, Carl C. Hayden, Noel X. Yang, Liping Wang, Eileen M. Lafer +3 more

Energy landscapes of Aβ monomers are sculpted in accordance with Ostwald’s rule of stages

Science Advances(2023)10.1126/sciadv.add6921

N/A

0DataRank · unranked

38 citations

John E. Straub, D. Thirumalai, Debayan Chakraborty

Conformational fluctuations and phases in fused in sarcoma (FUS) low‐complexity domain

Biopolymers(2023)10.1002/bip.23558

N/A

0DataRank · unranked

6 citations

Abhinaw Kumar, Debayan Chakraborty, John E. Straub, Mauro L. Mugnai, D. Thirumalai

Sizes, conformational fluctuations, and SAXS profiles for Intrinsically Disordered Proteins

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.24.538147

N/A

0DataRank · unranked

15 citations

Debayan Chakraborty, Abhinaw Kumar, Hung T. Nguyen, Wade F. Zeno, Jeanne C. Stachowiak +3 more

Brewing COFFEE: A sequence-specific coarse-grained energy function for simulations of DNA-protein complexes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.07.544064

N/A

0DataRank · unranked

0 citations

Balaka Mondal, D. Thirumalai, Debayan Chakraborty

Sizes, conformational fluctuations, and SAXS profiles for intrinsically disordered proteins

Protein Science(2025)10.1002/pro.70067

N/A

0DataRank · unranked

10 citations

Debayan Chakraborty, Hung T. Nguyen, Farkhad Maksudov, Abhinaw Kumar, Wade F. Zeno +4 more

Emergence of cellular nematic order is a conserved feature of gastrulation in animal embryos

Nature Communications(2025)10.1038/s41467-025-61045-0

N/A

0DataRank · unranked

6 citations

Robert J. Huebner, Margot Williams, Jessica K. Sawyer, Mark Peifer, John B. Wallingford +2 more

Rotational migration in human pancreatic ductal organoids depends on actin and myosin activity

Communications Biology(2025)10.1038/s42003-025-09136-y

N/A

0DataRank · unranked

0 citations

Chaity Modak, Olalekan H. Usman, Raphael W. F. Tan, Nicole Coca, Gabriela De Jesus +5 more

Processivity and Velocity for Motors Stepping on Periodic Tracks

Biophysical Journal(2020)10.1016/j.bpj.2020.01.047

N/A

0DataRank · unranked

7 citations

Matthew A. Caporizzo, Yale E. Goldman, D. Thirumalai, Mauro L. Mugnai

Dramatic Shape Changes Occur as Cytochrome c Folds

The Journal of Physical Chemistry B(2020)10.1021/acs.jpcb.0c05802

N/A

0DataRank · unranked

5 citations

Felicia Pitici, Alfredo E. Cárdenas, Ron Elber, D. Thirumalai, Serdal Kırmızıaltın

Role of Long-range Allosteric Communication in Determining the Stability and Disassembly of SARS-COV-2 in Complex with ACE2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.30.405340

N/A

0DataRank · unranked

14 citations

Clark Templeton, Ron Elber, D. Thirumalai, Mauro L. Mugnai

Differences in the free energies between the excited states of A β 40 and A β 42 monomers encode their distinct aggregation propensities

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.09.940676

N/A

0DataRank · unranked

4 citations

John E. Straub, D. Thirumalai, Debayan Chakraborty