Joseph M. Replogle

Also affiliated with Harvard University, Massachusetts General Hospital, Whitehead Institute for Biomedical Research, Massachusetts Institute of Technology

Biochemistry, Genetics and Molecular BiologyNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 20 papers. Top paper: “Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing”.

Genome-wide programmable transcriptional memory by CRISPR-based epigenome editing

Cell(2021)10.1016/j.cell.2021.03.025

N/A

7.5DataRank · unranked

771 citations

Chen Jin, Greg C. Pommier, J. Zachery Cogan, Joseph M. Replogle, Carmen Adriaens +15 more

Efficient C•G-to-G•C base editors developed using CRISPRi screens, target-library analysis, and machine learning

Nature Biotechnology(2021)10.1038/s41587-021-00938-z

N/A

4.9DataRank · unranked

208 citations

Mandana Arbab, Max W. Shen, Jeffrey A. Hussmann, Andrew V. Anzalone, Jordan L. Doman +10 more

Microfluidics-free single-cell genomics with templated emulsification

Nature Biotechnology(2023)10.1038/s41587-023-01685-z

N/A

4.2DataRank · unranked

218 citations

Kristina M. Fontanez, Robert H. Meltzer, Yi Xue, Corey E. Hayford, Aaron A. May‐Zhang +20 more

Maximizing CRISPRi efficacy and accessibility with dual-sgRNA libraries and optimal effectors

eLife(2022)10.7554/elife.81856

N/A

2.4DataRank · unranked

159 citations

Jessica L. Bonnar, Angela N. Pogson, Christina R. Liem, Nolan K Maier, Yufang Ding +13 more

Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci

Nature Neuroscience(2014)10.1038/nn.3786

N/A

1.0DataRank · unranked

999 citations

Gyan Srivastava, Katie Lunnon, Jeremy Burgess, Leonard C. Schalkwyk, Lei Yu +27 more

Polarization of the Effects of Autoimmune and Neurodegenerative Risk Alleles in Leukocytes

Science(2014)10.1126/science.1249547

N/A

0.948DataRank · unranked

556 citations

Sara Mostafavi, Chun Jimmie Ye, Mark N. Lee, Joseph M. Replogle, Ting Feng +22 more

Combinatorial single-cell CRISPR screens by direct guide RNA capture and targeted sequencing

Nature Biotechnology(2020)10.1038/s41587-020-0470-y

N/A

0.932DataRank · unranked

498 citations

Thomas M. Norman, Albert Xu, Jeffrey A. Hussmann, Jin Chen, J. Zachery Cogan +12 more

Lineage tracing reveals the phylodynamics, plasticity, and paths of tumor evolution

Cell(2022)10.1016/j.cell.2022.04.015

N/A

0.879DataRank · unranked

350 citations

Matthew G. Jones, Santiago Naranjo, William M. Rideout, Kyung Hoi Min, Raymond Ho +18 more

Transcriptome-wide characterization of genetic perturbations

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.03.601903

N/A

0.673DataRank · unranked

13 citations

Joseph M. Replogle, Angela N. Pogson, Steven A. McCarroll, Jonathan S. Weissman, Elise Robinson +2 more

Transcriptome-wide analysis of differential expression in perturbation atlases

Nature Genetics(2025)10.1038/s41588-025-02169-3

N/A

0.571DataRank · unranked

44 citations

Joseph M. Replogle, Angela N. Pogson, Mukundh Murthy, Steven A. McCarroll, Jonathan S. Weissman +3 more

Systematic functional interrogation of SARS-CoV-2 host factors using Perturb-seq

Nature Communications(2023)10.1038/s41467-023-41788-4

N/A

0.542DataRank · unranked

36 citations

Andreas S. Puschnik, Joseph M. Replogle, Matthew T. Laurie, Jamin Liu, Beth Shoshana Zha +13 more

Dual genome-wide coding and lncRNA screens in neural induction of induced pluripotent stem cells

Cell Genomics(2022)10.1016/j.xgen.2022.100177

N/A

0.505DataRank · unranked

28 citations

Aunoy Poddar, Elpinickie Ninou, Elizabeth Hwang, Mitchel A. Cole, S. John Liu +10 more

Microfluidics-free single-cell genomics with templated emulsification

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.10.495582

N/A

0.449DataRank · unranked

19 citations

Kristina M. Fontanez, Robert H. Meltzer, Yi Xue, Corey E. Hayford, Aaron A. May‐Zhang +20 more

Lineage Recording Reveals the Phylodynamics, Plasticity and Paths of Tumor Evolution

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.12.464111

N/A

0.439DataRank · unranked

10 citations

Matthew G. Jones, Santiago Naranjo, William M. Rideout, Kyung Hoi Min, Raymond Ho +18 more

Maximizing CRISPRi efficacy and accessibility with dual-sgRNA libraries and optimal effectors

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.13.499814

N/A

0.345DataRank · unranked

9 citations

Jessica L. Bonnar, Angela N. Pogson, Christina R. Liem, Nolan K Maier, Yufang Ding +13 more

Nucleotide depletion promotes cell fate transitions by inducing DNA replication stress

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.16.503984

N/A

0.292DataRank · unranked

6 citations

Peggy P. Hsu, Sidney Y. Vermeulen, Zhishan Wang, Taghreed Hirz, Keene L. Abbott +21 more

Systematic functional interrogation of SARS-CoV-2 host factors using Perturb-seq

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.15.500120

N/A

0DataRank · unranked

4 citations

Andreas S. Puschnik, Joseph M. Replogle, Matthew T. Laurie, Jamin Liu, Beth Shoshana Zha +13 more

A dual sgRNA library design to probe genetic modifiers using genome-wide CRISPRi screens

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.22.525086

N/A

0DataRank · unranked

3 citations

Katharine R. Page, Joseph M. Replogle, Theodore K. Esantsi, Maxine L. Wang, Jonathan S. Weissman +2 more

Mapping information-rich genotype-phenotype landscapes with genome-scale Perturb-seq

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.16.473013

N/A

0DataRank · unranked

79 citations

Reuben A. Saunders, Angela N. Pogson, Jeffrey A. Hussmann, Alexander LeNail, Alina Guna +12 more

GIGYF2 and 4EHP Inhibit Translation Initiation of Defective Messenger RNAs to Assist Ribosome-Associated Quality Control

Molecular Cell(2020)10.1016/j.molcel.2020.07.007

N/A

0DataRank · unranked

179 citations

Kimberley Dickson, J. Zachery Cogan, Joseph M. Replogle, Michael Schoof, Karole N. D’Orazio +8 more