Sofia A. Quinodoz

Also affiliated with Johns Hopkins University, Princeton University, Johns Hopkins Medicine

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 13 papers. Top paper: “SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses”.

SARS-CoV-2 Disrupts Splicing, Translation, and Protein Trafficking to Suppress Host Defenses

Cell(2020)10.1016/j.cell.2020.10.004

N/A

10.0DataRank · unranked

648 citations

Mario R. Blanco, Emily A. Bruce, Drew D. Honson, Linlin M. Chen, Amy Chow +17 more

SPRITE: a genome-wide method for mapping higher-order 3D interactions in the nucleus using combinatorial split-and-pool barcoding

Nature Protocols(2022)10.1038/s41596-021-00633-y

N/A

0.631DataRank · unranked

66 citations

Prashant Bhat, Peter Chovanec, Joanna W. Jachowicz, Noah Ollikainen, Elizabeth Detmar +3 more

High-Resolution Mapping of Multiway Enhancer-Promoter Interactions Regulating Pathogen Detection

Molecular Cell(2020)10.1016/j.molcel.2020.09.005

N/A

0.524DataRank · unranked

32 citations

Rachel Murphy, Sofia A. Quinodoz, Kyle Gellatly, Patrick McDonel, Mitchell Guttman +2 more

A single-cell method to map higher-order 3D genome organization in thousands of individual cells reveals structural heterogeneity in mouse ES cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.11.242081

N/A

0DataRank · unranked

15 citations

Joanna W. Jachowicz, Noah Ollikainen, Matthew S. Curtis, Charlotte Lai, Sofia A. Quinodoz +4 more

Single-cell measurement of higher-order 3D genome organization with scSPRITE

Nature Biotechnology(2021)10.1038/s41587-021-00998-1

N/A

0DataRank · unranked

137 citations

Joanna W. Jachowicz, Noah Ollikainen, Matthew S. Curtis, Charlotte Lai, Sofia A. Quinodoz +4 more

Integrative Genome Modeling Platform reveals essentiality of rare contact events in 3D genome organizations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.22.457288

N/A

0DataRank · unranked

8 citations

Aslı Yıldırım, Guido Polles, Sofia A. Quinodoz, Elizabeth H. Finn, Mitchell Guttman +3 more

RNA promotes the formation of spatial compartments in the nucleus

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.25.267435

N/A

0DataRank · unranked

56 citations

Prashant Bhat, Noah Ollikainen, Joanna W. Jachowicz, Abhik K. Banerjee, Peter Chovanec +6 more

Integrative genome modeling platform reveals essentiality of rare contact events in 3D genome organizations

Nature Methods(2022)10.1038/s41592-022-01527-x

N/A

0DataRank · unranked

61 citations

Aslı Yıldırım, Guido Polles, Yuxiang Zhan, Sofia A. Quinodoz, Elizabeth H. Finn +4 more

Simultaneous mapping of 3D structure and nascent RNAs argues against nuclear compartments that preclude transcription

Cell Reports(2022)10.1016/j.celrep.2022.111730

N/A

0DataRank · unranked

36 citations

Sofia A. Quinodoz, Joanna W. Jachowicz, Noah Ollikainen, Prashant Bhat, Mitchell Guttman +1 more

3D genome organization around nuclear speckles drives mRNA splicing efficiency

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.04.522632

N/A

0DataRank · unranked

18 citations

Amy Chow, Benjamin Emert, Olivia Ettlin, Sofia A. Quinodoz, Yodai Takei +4 more

The genomic and cellular basis of biosynthetic innovation in rove beetles

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.29.542378

N/A

0DataRank · unranked

5 citations

Thomas H. Naragon, Adrian Brückner, Mark S. Ladinsky, Sofia A. Quinodoz, Jean M. Badroos +12 more

Genome organization around nuclear speckles drives mRNA splicing efficiency

Nature(2024)10.1038/s41586-024-07429-6

N/A

0DataRank · unranked

162 citations

Amy Chow, Benjamin Emert, Olivia Ettlin, Sofia A. Quinodoz, Mackenzie Strehle +13 more

The genomic and cellular basis of biosynthetic innovation in rove beetles

Cell(2024)10.1016/j.cell.2024.05.012

N/A

0DataRank · unranked

16 citations

Thomas H. Naragon, Adrian Brückner, Mark S. Ladinsky, Sofia A. Quinodoz, Jean M. Badroos +13 more