Yue Qi

ORCID: 0000-0003-1914-8710

Biochemistry, Genetics and Molecular BiologyMedicineNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 47 papers. Top paper: “A cellular taxonomy of the adult human spinal cord”.

A cellular taxonomy of the adult human spinal cord

Neuron(2023)10.1016/j.neuron.2023.01.007

N/A

4.1DataRank · unranked

208 citations

Kaya J.E. Matson, Li Li, Isabelle Hua, Joana Petrescu, Kristy Kang +29 more

Application of Aligned-UMAP to longitudinal biomedical studies

Patterns(2023)10.1016/j.patter.2023.100741

N/A

1.1DataRank · unranked

53 citations

Vipul Satone, Rachneet Kaur, Mathew J. Koretsky, Hirotaka Iwaki, Yue Qi +11 more

TMEM106B core deposition associates with TDP-43 pathology and is increased in risk SNP carriers for frontotemporal dementia

Science Translational Medicine(2024)10.1126/scitranslmed.adf9735

N/A

0.889DataRank · unranked

51 citations

Virginia Estades Ayuso, Yari Carlomagno, Mei Yue, Tiffany W. Todd, Ying Hao +31 more

A reference human induced pluripotent stem cell line for large-scale collaborative studies

Cell stem cell(2022)10.1016/j.stem.2022.11.004

N/A

0.860DataRank · unranked

308 citations

Andrian Yang, Erika Lara, Justin A. McDonough, Cornelis Blauwendraat, Lirong Peng +90 more

Mis-spliced transcripts generate de novo proteins in TDP-43–related ALS/FTD

Science Translational Medicine(2024)10.1126/scitranslmed.adg7162

N/A

0.769DataRank · unranked

168 citations

Yue Qi, Anna‐Leigh Brown, Oscar G. Wilkins, Colleen Bereda, Cédric Belair +46 more

Immuno-transcriptomic profiling of extracranial pediatric solid malignancies

Cell Reports(2021)10.1016/j.celrep.2021.110047

N/A

0.650DataRank · unranked

75 citations

Sivasish Sindiri, Jun S. Wei, David Milewski, Hsien-Chao Chou, Young C. Song +32 more

Alterations in the Global Proteome and Phosphoproteome in Third Generation EGFR TKI Resistance Reveal Drug Targets to Circumvent Resistance

Cancer Research(2021)10.1158/0008-5472.can-20-2435

N/A

0.633DataRank · unranked

67 citations

Tapan K. Maity, Karen Ross, Yue Qi, Constance M. Cultraro, Meriam Bahta +9 more

A fully automated FAIMS-DIA mass spectrometry-based proteomic pipeline

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100593

N/A

0.606DataRank · unranked

56 citations

E. C. Lara, Daniel M. Ramos, Ziyi Li, Caroline B. Pantazis, Julia T. Stadler +12 more

TDP-43 loss induces cryptic polyadenylation in ALS/FTD

Nature Neuroscience(2025)10.1038/s41593-025-02050-w

N/A

0.593DataRank · unranked

23 citations

Anna‐Leigh Brown, Max Z. Y. J. Chien, Dario Dattilo, Puja R. Mehta, Francesca Mattedi +94 more

Mis-spliced transcripts generate de novo proteins in TDP-43-related ALS/FTD

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.23.525149

N/A

0.550DataRank · unranked

38 citations

Yue Qi, Anna‐Leigh Brown, Oscar G. Wilkins, Colleen Bereda, Cédric Belair +41 more

TDP-43 loss induces extensive cryptic polyadenylation in ALS/FTD

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.22.576625

N/A

0.489DataRank · unranked

25 citations

Anna‐Leigh Brown, Puja R. Mehta, Francesca Mattedi, Alla Mikheenko, Simone Barattucci +18 more

A reference induced pluripotent stem cell line for large-scale collaborative studies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.15.472643

N/A

0.467DataRank · unranked

14 citations

Andrian Yang, Erika Lara, Justin A. McDonough, Cornelis Blauwendraat, Lirong Peng +90 more

Common ALS/FTD risk variants in UNC13A exacerbate its cryptic splicing and loss upon TDP-43 mislocalization

Research Square(2021)10.21203/rs.3.rs-386600/v1

N/A

0.442DataRank · unranked

18 citations

Oscar G. Wilkins, Matthew J. Keuss, Sarah E. Hill, Matteo Zanovello, Weaverly Lee +18 more

An ANXA11 P93S variant dysregulates TDP‐43 and causes corticobasal syndrome

Alzheimer s & Dementia(2024)10.1002/alz.13915

N/A

0.442DataRank · unranked

18 citations

Veronica H. Ryan, James Hawrot, Sydney Lawton, Daniel M. Ramos, Yue Qi +16 more

Common ALS/FTD risk variants in UNC13A exacerbate its cryptic splicing and loss upon TDP-43 mislocalization

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.02.438170

N/A

0.425DataRank · unranked

16 citations

Oscar G. Wilkins, Matthew J. Keuss, Sarah E. Hill, Matteo Zanovello, Weaverly Colleen Lee +18 more

African ancestry neurodegeneration risk variant disrupts an intronic branchpoint in GBA1

Nature Structural & Molecular Biology(2024)10.1038/s41594-024-01423-2

N/A

0.425DataRank · unranked

16 citations

Peter Wild Crea, Daniel M. Ramos, Emil K. Gustavsson, Mandy Radefeldt, Andrey Damianov +36 more

A fully automated FAIMS-DIA proteomic pipeline for high-throughput characterization of iPSC-derived neurons

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469921

N/A

0.406DataRank · unranked

14 citations

Lirong Peng, Erika Lara, Daniel M. Ramos, Michael S. Fernandopulle, Caroline B. Pantazis +13 more

A Cellular Taxonomy of the Adult Human Spinal Cord

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.25.485808

N/A

0.385DataRank · unranked

12 citations

Kaya J.E. Matson, Li Li, Isabelle Hua, Joana Petrescu, Kristy Kang +28 more

Variant biomarker discovery using mass spectrometry-based proteogenomics

Frontiers in Aging(2023)10.3389/fragi.2023.1191993

N/A

0.360DataRank · unranked

10 citations

Sahba Seddighi, Andrew Singleton, Mark Cookson, Michael E. Ward, Yue Qi +1 more

TDP-43 pathology induces CD8 + T cell activation through cryptic epitope recognition

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.22.660773

N/A

0.346DataRank · unranked

8 citations

Matteo Zanovello, Steven Lingyang Kong, Vidur J. Saigal, Anna‐Leigh Brown, Valentina Turchetti +34 more

ProtPipe: A Multifunctional Data Analysis Pipeline for Proteomics and Peptidomics

Genomics Proteomics & Bioinformatics(2024)10.1093/gpbjnl/qzae083

N/A

0.330DataRank · unranked

8 citations

Cory A. Weller, Syed Islamuddin Shah, Nicholas L. Johnson, Ying Hao, Paige Jarreau +19 more

The short-chain fatty acid acetate coordinates with CD30 to modulate T-cell survival

Molecular Biology of the Cell(2023)10.1091/mbc.e23-01-0032

N/A

0.312DataRank · unranked

7 citations

Ziyi Li, Jessica P. Roberts, Yue Qi, Jianhua Xiong, Junfang Lyu

Altered mRNA transport and local translation in i3Neurons with RNA-binding protein knockdown

Nucleic Acids Research(2025)10.1093/nar/gkaf709

N/A

0.312DataRank · unranked

7 citations

Alla Mikheenko, Nicholas L. Johnson, Benjamin Packer, Ziyi Li, Emma J. Craig +12 more

An ANXA11 P93S variant dysregulates TDP-43 and causes corticobasal syndrome

Research Square(2023)10.21203/rs.3.rs-3462973/v1

N/A

0.312DataRank · unranked

7 citations

Veronica H. Ryan, James Hawrot, Sydney Lawton, Daniel M. Ramos, Yue Qi +16 more

ProtPipe: A Multifunctional Data Analysis Pipeline for Proteomics and Peptidomics

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.12.571327

N/A

0.312DataRank · unranked

7 citations

Cory A. Weller, Syed Nisar Hussain Shah, Nicholas L. Johnson, Ying Hao, Jessica Roberts +15 more

Gut-brain nexus: Mapping multimodal links to neurodegeneration at biobank scale

Science Advances(2025)10.1126/sciadv.adu2937

N/A

0.269DataRank · unranked

5 citations

Samantha Hong, Paul Suhwan Lee, Spencer Grant, Marzieh Khani, Anant Dadu +19 more

Maintenance of neuronal TDP-43 expression requires axonal lysosome transport

eLife(2025)10.7554/elife.104057.2

N/A

0.188DataRank · unranked

2 citations

Sydney Lawton, Joel F. Reyes, James Hawrot, Ashley M. Frankenfield, Sahba Seddighi +15 more

Maintenance of neuronal TDP-43 expression requires axonal lysosome transport

eLife(2025)10.7554/elife.104057

N/A

0.171DataRank · unranked

2 citations

Sydney Lawton, Joel F. Reyes, James Hawrot, Ashley M. Frankenfield, Sahba Seddighi +15 more

Gut-Brain Nexus: Mapping Multi-Modal Links to Neurodegeneration at Biobank Scale

medRxiv(2024)10.1101/2024.09.12.24313490

N/A

0.165DataRank · unranked

2 citations

Samantha Hong, Artur Francisco Schumacher Schuh, Mary B. Makarious, Rodrigo Sandon, Paul Suhwan Lee +15 more

Application of Aligned-UMAP to longitudinal biomedical studies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.12.518225

N/A

0.165DataRank · unranked

2 citations

Vipul Satone, Rachneet Kaur, Mathew J. Koretsky, Hirotaka Iwaki, Yue Qi +11 more

NAD metabolism modulates inflammation and mitochondria function in diabetic kidney disease

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.05.471273

N/A

0.107DataRank · unranked

1 citations

Xiaoxin X. Wang, Nataliia V. Shults, Bryce A. Jones, Xiaoping Yang, Avi Z. Rosenberg +19 more

Comparative study of enriched dopaminergic neurons from siblings with Gaucher disease discordant for parkinsonism

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.25.581985

N/A

0.104DataRank · unranked

1 citations

Gani Perez, Ying Hao, Krystyna Rytel, Charis Ma, Martha Kirby +11 more

African ancestry neurodegeneration risk variant disrupts an intronic branchpoint in GBA1

medRxiv(2024)10.1101/2024.02.20.24302827

N/A

0.104DataRank · unranked

1 citations

Peter Wild Crea, Daniel M. Ramos, Emil K. Gustavsson, Mandy Radefeldt, Mary B. Makarious +33 more

TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A

Nature(2022)10.1038/s41586-022-04436-3

N/A

0DataRank · unranked

525 citations

Oscar G. Wilkins, Matthew J. Keuss, Sarah E. Hill, Matteo Zanovello, Weaverly Colleen Lee +90 more

Proteogenomic Analysis Unveils the HLA Class I-Presented Immunopeptidome in Melanoma and EGFR-Mutant Lung Adenocarcinoma

Molecular & Cellular Proteomics(2021)10.1016/j.mcpro.2021.100136

N/A

0DataRank · unranked

34 citations

Tapan K. Maity, Constance M. Cultraro, Vikram Misra, Xu Zhang, Catherine M. Ade +10 more

APOE genotypes differentially remodel the astrocytic lipid droplet-associated proteome to shape lipid droplet dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.19.669163

N/A

0DataRank · unranked

5 citations

Jessica Root, Ying Hao, Isabelle Kowal, Niek Blomberg, Rodolfo Ghirlando +8 more

Global proteome and phosphoproteome alterations in third generation EGFR TKI resistance reveal drug targets to circumvent resistance

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.04.187617

N/A

0DataRank · unranked

3 citations

Tapan K. Maity, Karen Ross, Yue Qi, Constance M. Cultraro, Shaojian Gao +6 more

Proteogenomic analysis unveils the HLA Class I presented immunopeptidome in melanoma and EGFR mutant lung adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.04.236331

N/A

0DataRank · unranked

3 citations

Tapan K. Maity, Constance M. Cultraro, Vikram Misra, Xu Zhang, Catherine M. Ade +10 more

Integrative multiomic analysis links TDP-43-driven splicing defects to cascading proteomic disruption of ALS/FTD pathways

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.29.679403

N/A

0DataRank · unranked

2 citations

Zhengde Liu, Keyana Blake, Yue Qi, Sasha Rollinson, Sahba Seddighi +13 more

Large-scale HLA immunopeptidome and interactome profiling in microglia

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.23.650327

N/A

0DataRank · unranked

1 citations

Ying Hao, Alexandra Beilina, Jae Hyeon Park, Ziyi Li, Michiyo Iba +15 more

Bidirectional regulation of glycoprotein nonmetastatic melanoma protein B by β-glucocerebrosidase deficiency in GBA1 isogenic dopaminergic neurons from a patient with Gaucher disease and parkinsonism

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.23.661126

N/A

0DataRank · unranked

0 citations

Charis Ma, Richard Sam, Jens Lichtenberg, Tiffany Chen, Ying Hao +16 more

Estrogen-Related Receptor Agonism Reverses Mitochondrial Dysfunction and Inflammation in the Aging Kidney

American Journal Of Pathology(2023)10.1016/j.ajpath.2023.07.008

N/A

0DataRank · unranked

42 citations

Komuraiah Myakala, Andrew E. Libby, Ewa Krawczyk, Julia Panov, Bryce A. Jones +22 more

Evaluation of Induced Pluripotent Stem Cell‐Derived Dopaminergic Neurons from Siblings with Gaucher Disease Discordant for Parkinsonism

Movement Disorders(2025)10.1002/mds.30273

N/A

0DataRank · unranked

0 citations

Krystyna Rytel, Gani Perez, Ying Hao, Ziyi Li, Charis Ma +8 more

NAD metabolism modulates inflammation and mitochondria function in diabetic kidney disease

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.104975

N/A

0DataRank · unranked

74 citations

Xiaoxin X. Wang, Nataliia V. Shults, Ewa Krawczyk, Bryce A. Jones, Xiaoping Yang +20 more

TDP-43 and other hnRNPs regulate cryptic exon inclusion of a key ALS/FTD risk gene, UNC13A

PLoS Biology(2023)10.1371/journal.pbio.3002028

N/A

0DataRank · unranked

75 citations

Sarah Pickles, Virginia Estades Ayuso, Karen Jansen‐West, Yue Qi, Ziyi Li +9 more

Altered mRNA transport and local translation in iNeurons with RNA binding protein knockdown

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.26.615153

N/A

0DataRank · unranked

3 citations

Alla Mikheenko, Nicholas L. Johnson, Benjamin Packer, Ziyi Li, Emma J. Craig +10 more

Profiling the Skeletal Muscle Proteome in Patients on Atypical Antipsychotics and Mood Stabilizers

Brain Sciences(2022)10.3390/brainsci12020259

N/A

0DataRank · unranked

2 citations

Griffin Calme, Michael Caruso, Bradley H. Howlett, Elani Sanders, Zaher Msallaty +6 more