Vadim Backman

ORCID: 0000-0003-1981-1818

Also affiliated with Northwestern University

MedicineBiochemistry, Genetics and Molecular BiologyEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 54 papers. Top paper: “Evidence for possible association of vitamin D status with cytokine storm and unregulated inflammation in COVID-19 patients”.

Evidence for possible association of vitamin D status with cytokine storm and unregulated inflammation in COVID-19 patients

Aging Clinical and Experimental Research(2020)10.1007/s40520-020-01677-y

N/A

0DataRank · unranked

169 citations

Vasundhara Agrawal, Adam Eshein, Hariharan Subramanian, Hemant K. Roy, Vadim Backman +1 more

Disordered chromatin packing regulates phenotypic plasticity

Science Advances(2020)10.1126/sciadv.aax6232

N/A

0DataRank · unranked

74 citations

Wenli Wu, Luay M. Almassalha, Greta M. Bauer, Yue Li, David VanDerway +7 more

Characterizing chromatin packing scaling in whole nuclei using interferometric microscopy

Optics Letters(2020)10.1364/ol.400231

N/A

0DataRank · unranked

42 citations

Adam Eshein, Yue Li, Ranya Virk, David Van Derway, Di Zhang +3 more

Quantification of gastric mucosal microcirculation as a surrogate marker of portal hypertension by spatially resolved subdiffuse reflectance spectroscopy in diagnosis of cirrhosis: a proof-of-concept study

Gastrointestinal Endoscopy(2020)10.1016/j.gie.2020.12.037

N/A

0DataRank · unranked

2 citations

Adam Eshein, Phanisyam Kamineni, Uri Avissar, Charles M. Bliss, Michelle T. Long +6 more

Exposure of mammary cells to lipid activates gene expression changes associated with ER-negative breast cancer via chromatin remodeling

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.13.422540

N/A

0DataRank · unranked

0 citations

Ranya Virk, Carolina H. Chung, David Van Derway, Duojiao Chen, Kirsten B. Burdett +11 more

Nanoscale chromatin imaging and analysis platform bridges 4D chromatin organization with molecular function

Science Advances(2021)10.1126/sciadv.abe4310

N/A

0DataRank · unranked

90 citations

Adam Eshein, Ranya Virk, Aya Eid, Wenli Wu, Jane Frederick +20 more

Spike-in normalization for single-cell RNA-seq reveals dynamic global transcriptional activity mediating anticancer drug response

NAR Genomics and Bioinformatics(2021)10.1093/nargab/lqab054

N/A

0DataRank · unranked

8 citations

Jane Frederick, Hongbin Wang, Hui Sheng, Vadim Backman, Zhe Ji +1 more

Origins of subdiffractional contrast in optical coherence tomography

Biomedical Optics Express(2021)10.1364/boe.416572

N/A

0DataRank · unranked

4 citations

James A. Winkelmann, Adam Eshein, Allen Taflove, Vadim Backman, Aya Eid

Early Upper Aerodigestive Tract Cancer Detection Using Electron Microscopy to Reveal Chromatin Packing Alterations in Buccal Mucosa Cells

Microscopy and Microanalysis(2021)10.1017/s1431927621000507

N/A

0DataRank · unranked

3 citations

Yue Li, Anouk H. G. Wolters, Vasundhara Agrawal, Amil Dravid, Andrew Ying-Fei Chang +7 more

Chromatin as self-returning walks: From population to single cell and back

Biophysical Reports(2021)10.1016/j.bpr.2021.100042

N/A

0DataRank · unranked

3 citations

Kai Huang, Vadim Backman, Igal Szleifer, Anne R. Shim

Analysis of three-dimensional chromatin packing domains by chromatin scanning transmission electron microscopy (ChromSTEM)

Scientific Reports(2022)10.1038/s41598-022-16028-2

N/A

0DataRank · unranked

71 citations

Vasundhara Agrawal, Ranya Virk, Eric W. Roth, Wing Shun Li, Adam Eshein +9 more

Lipid exposure activates gene expression changes associated with estrogen receptor negative breast cancer

npj Breast Cancer(2022)10.1038/s41523-022-00422-0

N/A

0DataRank · unranked

12 citations

Ranya Virk, Carolina H. Chung, Mariana Bustamante Eduardo, David VanDerway, Duojiao Chen +12 more

Chromatin reprogramming and bone regeneration in vitro and in vivo via the microtopography-induced constriction of cell nuclei

Nature Biomedical Engineering(2023)10.1038/s41551-023-01053-x

N/A

0DataRank · unranked

77 citations

Vasundhara Agrawal, Cody L. Dunton, Yugang Liu, Ranya Virk, Priyam Patel +20 more

Early detection of lung cancer using artificial intelligence-enhanced optical nanosensing of chromatin alterations in field carcinogenesis

Scientific Reports(2023)10.1038/s41598-023-40550-6

N/A

0DataRank · unranked

20 citations

Sravya Prabhala, Parvathi Viswanathan, Hariharan Subramanian, Jianan Lin, Andrew S. Chang +4 more

Differentiation-dependent chromosomal organization changes in normal myogenic cells are absent in rhabdomyosarcoma cells

Frontiers in Cell and Developmental Biology(2023)10.3389/fcell.2023.1293891

N/A

0DataRank · unranked

4 citations

Tyler Hershenhouse, Luay M. Almassalha, David Walterhouse, Vadim Backman, Kyle L. MacQuarrie +1 more

Depletion of lamins B1 and B2 alters chromatin mobility and induces differential gene expression by a mesoscale-motion dependent mechanism

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.26.546573

N/A

0DataRank · unranked

4 citations

Xiaolong Wei, Nicolas Acosta, Lucas Carter, Jiekun Yang, Luay M. Almassalha +9 more

Early screening of colorectal cancer using feature engineering with artificial intelligence-enhanced analysis of nanoscale chromatin modifications

Research Square(2023)10.21203/rs.3.rs-3500134/v1

N/A

0DataRank · unranked

2 citations

Sravya Prabhala, Ali Daneshkhah, Jianan Lin, Hariharan Subramanian, Hemant K. Roy +2 more

The role of B-type lamins in genome architecture, chromatin dynamics, and gene regulation

Biophysical Journal(2023)10.1016/j.bpj.2022.11.2646

N/A

0DataRank · unranked

0 citations

Nicolas Acosta, Lucas Carter, Ali Daneshkahah, Vasundhara Agrawal, Jiekun Yang +7 more

Data from Optical Detection of Buccal Epithelial Nanoarchitectural Alterations in Patients Harboring Lung Cancer: Implications for Screening

(2023)10.1158/0008-5472.c.6500799

N/A

0DataRank · unranked

0 citations

Hariharan Subramanian, Dhwanil Damania, Thomas A. Hensing, William N. Rom, Harvey I. Pass +8 more

Active Transcription and Epigenetic Reactions Synergistically Regulate Meso-Scale Genomic Organization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.21.537822

N/A

0DataRank · unranked

0 citations

Zixian Guo, Vinayak Vinayak, Maria Victoria Neguembor, Wing Shun Li, Vasundhara Agrawal +7 more

Correction: Label free localization of nanoparticles in live cancer cells using spectroscopic microscopy

Nanoscale(2023)10.1039/d3nr90122j

N/A

0DataRank · unranked

0 citations

Luay M. Almassalha, Ignacio A. Martínez, Ronald J. Ellis, John E. Chandler, Scott Gladstein +8 more

Early screening of colorectal cancer using feature engineering with artificial intelligence-enhanced analysis of nanoscale chromatin modifications

medRxiv(2023)10.1101/2023.10.30.23297790

N/A

0DataRank · unranked

0 citations

Sravya Prabhala, Ali Daneshkhah, Jianan Lin, Hariharan Subramanian, Hemant K. Roy +2 more

Correction: Evidence for possible association of vitamin D status with cytokine storm and unregulated inflammation in COVID-19 patients

Aging Clinical and Experimental Research(2023)10.1007/s40520-023-02627-0

N/A

0DataRank · unranked

0 citations

Vasundhara Agrawal, Adam Eshein, Hariharan Subramanian, Hemant K. Roy, Vadim Backman +1 more

Depletion of lamins B1 and B2 promotes chromatin mobility and induces differential gene expression by a mesoscale-motion-dependent mechanism

Genome biology(2024)10.1186/s13059-024-03212-y

N/A

0DataRank · unranked

35 citations

Xiaolong Wei, Nicolas Acosta, Lucas Carter, Jiekun Yang, Luay M. Almassalha +12 more

Active transcription and epigenetic reactions synergistically regulate meso-scale genomic organization

Nature Communications(2024)10.1038/s41467-024-48698-z

N/A

0DataRank · unranked

30 citations

Zixian Guo, Vinayak Vinayak, Maria Victoria Neguembor, Wing Shun Li, Vasundhara Agrawal +7 more

Histone H3.1 is a chromatin-embedded redox sensor triggered by tumor cells developing adaptive phenotypic plasticity and multidrug resistance

Cell Reports(2024)10.1016/j.celrep.2024.113897

N/A

0DataRank · unranked

28 citations

Diego R. Coelho, Kirthi Pulakanti, Marcelo J. Sakiyama, Yunping Huang, Fernando T. Ogata +10 more

Formamide denaturation of double-stranded DNA for fluorescence in situ hybridization (FISH) distorts nanoscale chromatin structure

PLoS ONE(2024)10.1371/journal.pone.0301000

N/A

0DataRank · unranked

12 citations

Jane Frederick, Emily M. Pujadas-Liwag, Tiffany Kuo, I Chae Ye, Joshua A. Pritchard +9 more

Deep learning-based spectroscopic single-molecule localization microscopy

Journal of Biomedical Optics(2024)10.1117/1.jbo.29.6.066501

N/A

0DataRank · unranked

10 citations

Ali Daneshkhah, Ethan Flowerday, Ruyi Gong, Jane Frederick, Vadim Backman +1 more

Decreased DNA density is a better indicator of a nuclear bleb than lamin B loss

Journal of Cell Science(2024)10.1242/jcs.262082

N/A

0DataRank · unranked

9 citations

Kelsey Prince, Emily M. Pujadas-Liwag, Nebiyat Eskndir, Karan Srikrishna, Antonia Amonu McCarthy +22 more

The impact of charge regulation and ionic intranuclear environment on the nucleosome core particle

The Journal of Chemical Physics(2024)10.1063/5.0241529

N/A

0DataRank · unranked

7 citations

Paola Carrillo Gonzalez, A. E. Coraor, Ranya Virk, Juan Pablo, Vadim Backman +2 more

Transcorneal electrical stimulation restores DNA methylation changes in retinal degeneration

Frontiers in Molecular Neuroscience(2024)10.3389/fnmol.2024.1484964

N/A

0DataRank · unranked

6 citations

Gerald Gooden, Pei-An Lo, Dimitrios Pollalis, Brandon Ebright, Alex J. Kalfa +13 more

Early screening of colorectal cancer using feature engineering with artificial intelligence-enhanced analysis of nanoscale chromatin modifications

Scientific Reports(2024)10.1038/s41598-024-58016-8

N/A

0DataRank · unranked

11 citations

Sravya Prabhala, Ali Daneshkhah, Jianan Lin, Hariharan Subramanian, Hemant K. Roy +2 more

Local volume concentration, packing domains, and scaling properties of chromatin

eLife(2024)10.7554/elife.97604

N/A

0DataRank · unranked

4 citations

Martin Kroeger, Luay M. Almassalha, Vasundhara Agrawal, Wing Shun Li, Emily M. Pujadas-Liwag +4 more

Deep learning-driven automatic nuclei segmentation of live-cell chromatin-sensitive partial wave spectroscopic microscopy imaging

Optics Express(2024)10.1364/oe.540169

N/A

0DataRank · unranked

3 citations

Ali Daneshkhah, Nicolas Acosta, Nick Anthony, Emily Pujadas Liwag, Vadim Backman +2 more

Necrotizing Enterocolitis Detection in Premature Infants Using Broadband Optical Spectroscopy

Journal of Biophotonics(2024)10.1002/jbio.202400273

N/A

0DataRank · unranked

1 citations

Ali Daneshkhah, Yuanzhe Su, Vadim Backman, Seth D. Goldstein, Ethan Flowerday

Chromatin packing domains persist after RAD21 depletion in 3D

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.02.582972

N/A

0DataRank · unranked

7 citations

Lucas Carter, Luay M. Almassalha, Emily M. Pujadas-Liwag, Tiffany Kuo, Kyle L. MacQuarrie +6 more

DNA density is a better indicator of a nuclear bleb than lamin B loss

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.02.06.579152

N/A

0DataRank · unranked

5 citations

Kelsey Prince, Karan Srikrishna, Emily M. Pujadas-Liwag, Antonia Amonu McCarthy, Anna Kuklinski +20 more

Nuclear blebs are associated with destabilized chromatin packing domains

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.28.587095

N/A

0DataRank · unranked

3 citations

Nicolas Acosta, Luay M. Almassalha, Yuanzhe Su, Ruyi Gong, Masato T. Kanemaki +3 more

KRAS silencing impacts chromatin organization and transcriptional activity in colorectal cancer cells

Research Square(2024)10.21203/rs.3.rs-3752760/v2

N/A

0DataRank · unranked

2 citations

Ana Luísa Machado, Andreia Ribeiro, Susana Mendonça Oliveira, Joana Carvalho, Rune Matthiesen +3 more

Deep Learning-driven Automatic Nuclei Segmentation of Label-free Live Cell Chromatin-sensitive Partial Wave Spectroscopic Microscopy Imaging

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.20.608885

N/A

0DataRank · unranked

2 citations

Ali Daneshkhah, Nicolas Acosta, Nick Anthony, Emily Pujadas Liwag, Vadim Backman +2 more

Three-color single-molecule localization microscopy in chromatin

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.09.612161

N/A

0DataRank · unranked

2 citations

Ruyi Gong, Yuanzhe Su, Jane Frederick, Karla Medina, Wing Shun Li +4 more

Formamide denaturation of double-stranded DNA for fluorescence in situ hybridization (FISH) distorts nanoscale chromatin structure

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.01.582995

N/A

0DataRank · unranked

0 citations

Jane Frederick, Emily M. Pujadas-Liwag, Tiffany Kuo, I Chae Ye, Joshua A. Pritchard +9 more

KRAS silencing alters chromatin physical organization and transcriptional activity in colorectal cancer cells

Research Square(2024)10.21203/rs.3.rs-3752760/v3

N/A

0DataRank · unranked

0 citations

Ana Luísa Machado, Andreia Ribeiro, Susana Mendonça Oliveira, Joana Carvalho, Rune Matthiesen +3 more

The Impact of Charge Regulation and Ionic Intranuclear Environment on the Nucleosome Core Particle

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.11.623012

N/A

0DataRank · unranked

0 citations

Paola Carrillo Gonzalez, A. E. Coraor, Ranya Virk, Juan Pablo, Vadim Backman +2 more

Leveraging chromatin packing domains to target chemoevasion in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.14.623612

N/A

0DataRank · unranked

0 citations

Ranya Virk, I Chae Ye, Luay M. Almassalha, Greta Wodarcyk, David VanDerway +15 more

Chromatin conformation, gene transcription, and nucleosome remodeling as an emergent system

Science Advances(2025)10.1126/sciadv.adq6652

N/A

0DataRank · unranked

32 citations

Marcelo A. Carignano, Emily M. Pujadas-Liwag, Wing Shun Li, Ruyi Gong, Nicolas Acosta +19 more

Chromatin Organization Governs Transcriptional Response and Plasticity of Cancer Stem Cells

Advanced Science(2025)10.1002/advs.202407426

N/A

0DataRank · unranked

12 citations

Jane Frederick, Karla Medina, Elizabeth T. Bartom, Luay M. Almassalha, Yaqi Zhang +16 more

Nuclear blebs are associated with destabilized chromatin-packing domains

Journal of Cell Science(2025)10.1242/jcs.262161

N/A

0DataRank · unranked

12 citations

Nicolas Acosta, Luay M. Almassalha, Yuanzhe Su, Ruyi Gong, Masato T. Kanemaki +3 more

Microtopography-induced changes in cell nucleus morphology enhance bone regeneration by modulating the cellular secretome

Nature Communications(2025)10.1038/s41467-025-60760-y

N/A

0DataRank · unranked

6 citations

Yiming Li, Zitong Lin, Indira Plá, Raju Gajjela, Basil Baby Mattamana +16 more

Leveraging chromatin packing domains to target chemoevasion in vivo

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2425319122

N/A

0DataRank · unranked

3 citations

Ranya Virk, I Chae Ye, Luay M. Almassalha, Greta Wodarcyk, David VanDerway +21 more

Geometrically Encoded Positioning of Introns, Intergenic Segments, and Exons in the Human Genome

Advanced Science(2025)10.1002/advs.202509964

N/A

0DataRank · unranked

2 citations

Kyle L. MacQuarrie, Marcelo A. Carignano, Cody L. Dunton, Ruyi Gong, Joe Ibarra +7 more

Differential unfolded protein response regulation in KRAS silencing sensitive and innately resistant colorectal cancer cells

Scientific Reports(2025)10.1038/s41598-025-94549-2

N/A

0DataRank · unranked

2 citations

Ana Lúcia Machado, Joana Carvalho, Catarina R. Almeida, Hans Christian Beck, Ana Sofía Carvalho +4 more

Micropillar-induced changes in cell nucleus morphology enhance bone regeneration by modulating the secretome

Research Square(2025)10.21203/rs.3.rs-5530535/v1

N/A

0DataRank · unranked

0 citations

Guillermo A. Ameer, Yiming Li, Zitong Lin, Indira Plá, Raju Gajjela +16 more

Geometrically encoded positioning of introns, intergenic segments, and exons in the human genome

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.29.656862

N/A

0DataRank · unranked

0 citations

Kyle L. MacQuarrie, Marcelo A. Carignano, Cody L. Dunton, Ruyi Gong, Joe Ibarra +7 more