Frank Alber

ORCID: 0000-0003-1981-8390

Also affiliated with University of California, Los Angeles

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 16 papers. Top paper: “Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project”.

Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

Molecular Cell(2023)10.1016/j.molcel.2023.06.018

N/A

1.7DataRank · unranked

97 citations

Frank Alber, Sarah Aufmkolk, Brian J. Beliveau, Benoit G. Bruneau, Andrew S. Belmont +30 more

Computational methods for analysing multiscale 3D genome organization

Nature Reviews Genetics(2023)10.1038/s41576-023-00638-1

N/A

0.683DataRank · unranked

94 citations

Lorenzo Boninsegna, Muyu Yang, Tom Misteli, Frank Alber, Jian Ma +1 more

Evaluating the role of the nuclear microenvironment in gene function by population-based modeling

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01036-1

N/A

0.510DataRank · unranked

29 citations

Nan Hua, Lorenzo Boninsegna, Yuxiang Zhan, Guido Polles, Ke Gong +5 more

Integrative Genome Modeling Platform reveals essentiality of rare contact events in 3D genome organizations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.22.457288

N/A

0DataRank · unranked

8 citations

Aslı Yıldırım, Guido Polles, Sofia A. Quinodoz, Elizabeth H. Finn, Mitchell Guttman +3 more

Population-based structure modeling reveals key roles of nuclear microenviroment in gene functions

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.11.451976

N/A

0DataRank · unranked

7 citations

Nan Hua, Lorenzo Boninsegna, Guido Polles, Ke Gong, Shengli Hao +4 more

Integrative genome modeling platform reveals essentiality of rare contact events in 3D genome organizations

Nature Methods(2022)10.1038/s41592-022-01527-x

N/A

0DataRank · unranked

61 citations

Aslı Yıldırım, Guido Polles, Yuxiang Zhan, Sofia A. Quinodoz, Elizabeth H. Finn +4 more

Mega-Enhancers Compartmentalize Transcriptionally Active Long Genes in the Brain

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.19.549737

N/A

0DataRank · unranked

7 citations

Omar A. Payán Parra, Shin-ichiro Fujita, Francesco Musella, Nicolas Scrutton Alvarado, Frank Alber +3 more

Conformational analysis of chromosome structures reveals vital role of chromosome morphology in gene function

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.18.528138

N/A

0DataRank · unranked

5 citations

Aslı Yıldırım, Lorenzo Boninsegna, Frank Alber, Yuxiang Zhan

Prediction of single-cell chromatin compartments from single-cell chromosome structures by MaxComp

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.07.02.600897

N/A

0DataRank · unranked

2 citations

Francesco Musella, Frank Alber, Yuxiang Zhan

MaxComp: Predicting single-cell chromatin compartments from 3D chromosome structures

PLoS Computational Biology(2025)10.1371/journal.pcbi.1013114

N/A

0DataRank · unranked

3 citations

Francesco Musella, Frank Alber, Yuxiang Zhan

Unveiling the role of chromosome structure morphology on gene function through chromosome conformation analysis

Genome biology(2025)10.1186/s13059-024-03472-8

N/A

0DataRank · unranked

4 citations

Aslı Yıldırım, Lorenzo Boninsegna, Frank Alber, Yuxiang Zhan

3D genome organization shapes DNA damage susceptibility to platinum-based drugs

Nucleic Acids Research(2025)10.1093/nar/gkaf315

N/A

0DataRank · unranked

2 citations

Aslı Yıldırım, Lorenzo Boninsegna, Valentina Christian, Sung‐Hae Kang, Xianghong Jasmine Zhou +2 more

Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomography

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.23.125823

N/A

0DataRank · unranked

0 citations

Kate L. White, Raymond C. Stevens, Frank Alber, Jitin Singla

map3C: a computational tool for processing multiomic single-cell Hi-C data

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.10.681728

N/A

0DataRank · unranked

0 citations

Ye Wang, Frank Alber, Jason Ernst, Chongyuan Luo, Joseph Galasso

Integrative approaches in genome structure analysis

Structure(2021)10.1016/j.str.2021.12.003

N/A

0DataRank · unranked

13 citations

Aslı Yıldırım, Yuxiang Zhan, Frank Alber, Lorenzo Boninsegna

Assessment of scoring functions to rank the quality of 3D subtomogram clusters from cryo-electron tomography

Journal of Structural Biology(2021)10.1016/j.jsb.2021.107727

N/A

0DataRank · unranked

3 citations

Kate L. White, Raymond C. Stevens, Frank Alber, Jitin Singla